Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0006701 Helianthus annuus HOM05D005528 ORTHO05D007066 2.2e-76 288.9 144 100.0
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 3.7e-60 235.0 152 79.6
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 2.8e-55 218.8 152 75.7
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 1.5e-53 213.0 152 71.7
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 3.5e-50 201.8 148 70.3
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 3.3e-48 195.3 148 67.6
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 4.3e-48 194.9 152 66.4
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 1.6e-47 193.0 152 66.4
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 2.1e-47 192.6 148 66.2
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 3.6e-47 191.8 151 64.9
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 3.6e-47 191.8 152 64.5
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 3.6e-47 191.8 152 65.8
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 4.7e-47 191.4 151 64.2
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 4.7e-47 191.4 150 66.0
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 6.2e-47 191.0 148 64.9
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 1.1e-46 190.3 152 63.8
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 4.0e-46 188.3 148 65.5
Lalb_Chr15g0087931 Lupinus albus HOM05D005528 ORTHO05D007066 4.0e-46 188.3 149 65.1
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 4.0e-46 188.3 151 62.3
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 4.0e-46 188.3 151 63.6
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 5.2e-46 188.0 148 65.5
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 6.8e-46 187.6 148 63.5
Phvul.003G083000 Phaseolus vulgaris HOM05D005528 ORTHO05D007066 8.9e-46 187.2 149 63.1
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 1.2e-45 186.8 148 63.5
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 1.2e-45 186.8 148 64.2
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 1.2e-45 186.8 148 64.2
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 1.2e-45 186.8 148 64.9
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 1.2e-45 186.8 148 64.9
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 1.5e-45 186.4 148 65.5
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 2.0e-45 186.0 148 64.2
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 2.0e-45 186.0 156 59.6
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 2.0e-45 186.0 148 64.9
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 2.6e-45 185.7 148 64.9
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 2.6e-45 185.7 148 64.2
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 3.4e-45 185.3 148 64.9
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 4.4e-45 184.9 148 62.8
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 4.4e-45 184.9 148 64.2
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 4.4e-45 184.9 148 64.9
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 5.8e-45 184.5 148 63.5
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 7.5e-45 184.1 148 63.5
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 7.5e-45 184.1 148 62.2
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 7.5e-45 184.1 148 64.2
Peaxi162Scf00558g00217 Petunia axillaris HOM05D005528 ORTHO05D007066 7.5e-45 184.1 148 63.5
Potri.004G001701 Populus trichocarpa HOM05D005528 ORTHO05D007066 7.5e-45 184.1 138 65.9
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 7.5e-45 184.1 150 62.0
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 9.8e-45 183.7 152 61.8
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 9.8e-45 183.7 152 61.8
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 9.8e-45 183.7 148 62.8
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 1.3e-44 183.3 152 61.2
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 1.3e-44 183.3 148 62.2
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-44 183.0 148 62.8
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 1.7e-44 183.0 152 61.2
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 1.7e-44 183.0 148 62.2
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 2.2e-44 182.6 148 61.5
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 2.9e-44 182.2 148 62.2
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 2.9e-44 182.2 148 61.5
Carub.0007s1901 Capsella rubella HOM05D005528 ORTHO05D007066 3.7e-44 181.8 148 61.5
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 3.7e-44 181.8 152 59.9
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 3.7e-44 181.8 146 63.0
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 3.7e-44 181.8 148 63.5
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 3.7e-44 181.8 165 57.0
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 4.9e-44 181.4 155 61.9
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 6.4e-44 181.0 148 62.8
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 8.3e-44 180.6 148 60.1
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 8.3e-44 180.6 155 61.3
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 1.4e-43 179.9 148 60.8
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 1.4e-43 179.9 148 61.5
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 1.9e-43 179.5 152 59.9
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 3.2e-43 178.7 155 59.4
Oeu049726.1 Olea europaea HOM05D005528 ORTHO05D007066 3.2e-43 178.7 148 60.1
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 5.4e-43 177.9 146 61.0
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 5.4e-43 177.9 152 60.5
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 7.0e-43 177.6 146 61.6
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 7.0e-43 177.6 148 59.5
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 9.2e-43 177.2 148 59.5
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 1.6e-42 176.4 150 59.3
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 1.6e-42 176.4 150 59.3
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 1.6e-42 176.4 150 59.3
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 1.6e-42 176.4 152 60.5
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 1.6e-42 176.4 148 59.5
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 2.1e-42 176.0 150 58.0
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 2.1e-42 176.0 146 60.3
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 3.5e-42 175.3 152 59.9
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 3.5e-42 175.3 147 61.9
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 4.6e-42 174.9 146 60.3
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 6.0e-42 174.5 148 58.8
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 7.8e-42 174.1 151 58.3
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 1.0e-41 173.7 196 50.5
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 1.7e-41 172.9 148 59.5
GSVIVG01002096001 Vitis vinifera HOM05D005528 ORTHO05D007066 2.3e-41 172.6 148 60.1
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 3.0e-41 172.2 147 58.5
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 5.0e-41 171.4 158 56.3
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 5.0e-41 171.4 147 59.2
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 5.0e-41 171.4 148 58.8
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 5.0e-41 171.4 152 57.9
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 6.6e-41 171.0 148 57.4
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 8.6e-41 170.6 148 58.8
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 8.6e-41 170.6 148 60.1
CANSAT56G4535 Cannabis sativa HOM05D005528 ORTHO05D007066 1.1e-40 170.2 151 58.9
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 1.5e-40 169.9 152 55.9
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 1.9e-40 169.5 148 57.4
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 1.9e-40 169.5 148 56.8
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 9.5e-40 167.2 148 56.8
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 4.7e-39 164.9 148 55.4
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 4.7e-39 164.9 148 56.1
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 3.1e-38 162.2 147 56.5
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 4.0e-38 161.8 139 59.0
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 4.9e-36 154.8 236 40.7
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 1.4e-35 153.3 153 55.6
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 5.1e-33 144.8 151 49.7
Rhsim13G0147900 Rhododendron simsii HOM05D005528 ORTHO05D007066 5.4e-27 124.8 197 40.1
Haze_06901 Corylus avellana HOM05D005528 ORTHO05D007066 3.0e-25 119.0 133 50.4
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 1.5e-24 116.7 114 57.0
AL8G44690 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 4.3e-24 115.2 85 65.9
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 2.8e-23 112.5 153 41.8
vmacro03840 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 8.1e-23 110.9 80 65.0
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 1.4e-22 110.2 154 40.9
Zm00001eb433300 Zea mays HOM05D005528 ORTHO05D007066 4.4e-21 105.1 120 48.3
AL7G31780 Arabidopsis lyrata HOM05D005528 ORTHO05D000003 5.8e-21 104.8 70 68.6
MELO3C007429.2 Cucumis melo HOM05D005528 ORTHO05D007066 9.9e-21 104.0 104 51.9
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 6.6e-17 91.3 80 61.2
Thhalv10011887m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 7.3e-16 87.8 58 70.7
PRCOL_00003009 Prasinoderma coloniale HOM05D005528 ORTHO05D007066 4.2e-11 72.0 136 30.9
Thhalv10023148m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 1.2e-10 70.5 76 48.7
Glyma.07G264950 Glycine max HOM05D005528 ORTHO05D007066 2.1e-10 69.7 46 65.2
MCO05G339 Micromonas commoda HOM05D005528 ORTHO05D007066 2.5e-08 62.8 133 34.6
Cre03.g164350 Chlamydomonas reinhardtii HOM05D001262 ORTHO05D001114 3.3e-08 62.4 144 30.6
Glyma.07G264900 Glycine max HOM05D005528 ORTHO05D007066 7.4e-08 61.2 38 71.1
Os04g0669700 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 1.3e-07 60.5 47 55.3
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 1.3e-07 60.5 61 52.5
MCO05G361 Micromonas commoda HOM05D001262 ORTHO05D001114 4.8e-07 58.5 132 26.5
MCO13G631 Micromonas commoda HOM05D005528 ORTHO05D007066 8.1e-07 57.8 128 28.9
Cfa027170 Carpinus fangiana HOM05D005528 ORTHO05D007066 1.8e-06 56.6 124 32.3
PRCOL_00004932 Prasinoderma coloniale HOM05D005528 ORTHO05D001114 6.9e-06 54.7 132 28.8


User provided reference genes

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