Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 7.8e-277 956.4 466 100.0
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.5e-211 739.6 466 78.5
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 2.8e-210 735.3 489 75.1
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 8.0e-205 717.2 427 79.9
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 7.5e-203 710.7 484 74.8
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 3.3e-190 668.7 454 68.9
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 8.3e-186 654.1 407 74.4
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 1.6e-184 649.8 419 71.6
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 4.6e-184 648.3 452 68.6
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 1.0e-183 647.1 454 68.9
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 3.0e-183 645.6 440 68.2
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 3.9e-183 645.2 460 67.0
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 1.1e-182 643.7 449 69.3
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 1.5e-182 643.3 452 68.6
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 1.2e-181 640.2 452 68.1
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 1.2e-181 640.2 464 66.6
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 2.1e-181 639.4 450 67.1
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 3.6e-181 638.6 454 65.6
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 2.3e-180 636.0 457 65.2
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 3.1e-180 635.6 450 67.1
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 4.0e-180 635.2 446 66.8
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 8.9e-180 634.0 443 66.6
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 1.2e-179 633.6 462 64.3
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 3.4e-179 632.1 447 66.4
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 4.4e-179 631.7 462 64.9
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 7.5e-179 630.9 447 66.2
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 1.3e-178 630.2 411 69.8
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 1.7e-178 629.8 450 66.4
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 3.7e-178 628.6 429 69.0
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 3.7e-178 628.6 420 69.3
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 8.3e-178 627.5 463 64.6
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 1.1e-177 627.1 420 69.0
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 1.4e-177 626.7 422 69.7
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 1.9e-177 626.3 413 69.0
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 2.4e-177 625.9 446 65.9
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 2.4e-177 625.9 470 64.5
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 2.4e-177 625.9 418 70.3
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 1.6e-176 623.2 422 68.0
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 2.1e-176 622.9 395 72.7
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 3.5e-176 622.1 457 65.0
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 3.5e-176 622.1 395 72.9
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 3.5e-176 622.1 413 68.5
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 6.0e-176 621.3 422 67.8
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 7.8e-176 620.9 411 69.1
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 7.8e-176 620.9 430 67.0
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 1.3e-175 620.2 449 65.5
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.7e-175 619.8 457 63.9
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 2.3e-175 619.4 395 71.9
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 3.0e-175 619.0 457 64.6
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 5.1e-175 618.2 460 64.6
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 6.6e-175 617.8 482 62.7
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.1e-174 617.1 466 63.9
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 2.5e-174 615.9 453 65.6
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 2.5e-174 615.9 401 70.3
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 2.5e-174 615.9 413 68.3
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 5.6e-174 614.8 463 64.1
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 7.3e-174 614.4 462 64.3
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 7.3e-174 614.4 462 64.3
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 9.5e-174 614.0 462 64.3
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 3.6e-173 612.1 450 65.3
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 3.6e-173 612.1 427 67.0
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 4.7e-173 611.7 462 64.1
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 8.1e-173 610.9 425 68.9
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 1.1e-172 610.5 450 63.1
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 1.1e-172 610.5 454 64.3
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.1e-172 610.5 425 66.4
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.1e-172 609.0 458 63.8
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 3.1e-172 609.0 456 64.3
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 5.2e-172 608.2 461 63.6
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 5.2e-172 608.2 403 68.7
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 5.2e-172 608.2 459 63.6
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 6.8e-172 607.8 451 63.0
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 3.4e-171 605.5 456 63.4
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 5.8e-171 604.7 430 64.9
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 7.6e-171 604.4 450 63.3
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 2.2e-170 602.8 455 62.2
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 2.2e-170 602.8 413 68.8
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 8.3e-170 600.9 464 62.9
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 4.1e-169 598.6 460 62.2
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 5.4e-169 598.2 397 72.3
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.7e-168 595.9 398 66.8
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 1.7e-167 593.2 459 62.3
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 5.1e-167 591.7 392 70.4
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 1.1e-166 590.5 424 66.0
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 7.3e-166 587.8 415 66.0
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 9.6e-166 587.4 449 61.2
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.2e-165 587.0 449 61.5
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 4.4e-163 578.6 385 67.5
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 5.8e-163 578.2 453 60.7
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 8.4e-162 574.3 407 63.4
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 1.9e-161 573.2 433 65.4
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.0e-160 568.2 456 59.2
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 1.0e-159 567.4 373 72.4
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.7e-159 566.6 411 66.2
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.1e-158 563.9 440 62.3
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 4.8e-157 558.5 356 71.9
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 3.1e-156 555.8 415 62.4
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 9.9e-155 550.8 415 61.9
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 1.9e-153 546.6 355 71.0
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.9e-150 536.6 400 65.5
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 2.0e-147 526.6 413 62.7
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 3.9e-143 512.3 330 73.0
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 1.3e-141 507.3 354 64.1
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 1.5e-139 500.4 365 65.2
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.0e-138 497.7 331 69.5
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 6.1e-120 435.3 410 50.0
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 2.0e-118 430.3 394 52.8
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 9.7e-118 427.9 403 49.1
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.1e-116 424.5 412 50.2
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 5.5e-113 412.1 429 51.7
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 5.3e-108 395.6 313 63.6
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 1.7e-106 390.6 259 72.2
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 4.7e-104 382.5 434 44.0
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 4.0e-95 352.8 240 71.2
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 5.2e-87 325.9 242 60.7
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 4.7e-72 276.2 184 66.3
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 1.9e-68 264.2 159 73.0
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 7.8e-67 258.8 187 64.2
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 1.8e-63 247.7 214 53.3
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 2.2e-61 240.7 210 58.1
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.3e-58 231.5 162 64.2
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 5.6e-49 199.5 129 70.5
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 2.5e-41 174.1 142 55.6
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 1.2e-27 128.6 383 27.7
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.1e-27 127.9 413 26.6
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 1.6e-24 118.2 86 65.1
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 1.4e-23 115.2 347 27.4
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 1.6e-16 91.7 395 28.1
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 5.5e-12 76.6 54 68.5
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 3.0e-10 70.9 80 51.2
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 3.3e-09 67.4 102 37.3
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 2.2e-08 64.7 63 47.6
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 3.7e-08 63.9 61 50.8
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 3.7e-08 63.9 61 50.8
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.1e-07 62.4 168 31.0
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 1.4e-07 62.0 56 46.4
ATR0582G303 Amborella trichopoda HOM05D005705 ORTHO05D007152 1.2e-06 58.9 236 25.0


User provided reference genes

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