Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0394g0574521 Helianthus annuus HOM05D002578 ORTHO05D002698 1.4e-23 112.1 56 100.0
HanXRQChr00c0593g0576411 Helianthus annuus HOM05D002578 ORTHO05D002698 4.3e-20 100.5 52 96.2
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 4.3e-20 100.5 52 96.2
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 4.3e-20 100.5 52 96.2
HanXRQChr05g0152531 Helianthus annuus HOM05D002578 ORTHO05D002698 4.3e-20 100.5 52 96.2
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 4.3e-20 100.5 52 96.2
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 4.3e-20 100.5 52 96.2
HanXRQChr11g0327011 Helianthus annuus HOM05D002578 ORTHO05D002698 4.3e-20 100.5 52 96.2
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 4.3e-20 100.5 52 96.2
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 4.3e-20 100.5 52 96.2
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 4.3e-20 100.5 52 96.2
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 4.3e-20 100.5 52 96.2
Lsat_1_v5_gn_5_50481 Lactuca sativa HOM05D002578 ORTHO05D002698 4.3e-20 100.5 52 96.2
HanXRQChr16g0500141 Helianthus annuus HOM05D002578 ORTHO05D002698 2.1e-19 98.2 52 94.2
Hma1.2p1_0192F.1_g083740 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 1.0e-18 95.9 52 92.3
Hma1.2p1_0247F.1_g101834 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 1.0e-18 95.9 52 92.3
Hma1.2p1_0298F.1_g117736 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 1.0e-18 95.9 52 92.3
Hma1.2p1_0818F.1_g223301 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 1.0e-18 95.9 52 92.3
CAN.G114.8 Capsicum annuum HOM05D002578 ORTHO05D002698 8.9e-18 92.8 54 87.0
DCAR_032525 Daucus carota HOM05D002578 ORTHO05D002698 1.5e-17 92.0 53 86.8
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 2.0e-17 91.7 54 85.2
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.0e-17 91.7 54 85.2
Hma1.2p1_0104F.1_g050125 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 9.8e-17 89.4 46 95.7
Nitab4.5_0004430g0050 Nicotiana tabacum HOM05D002578 ORTHO05D002698 9.8e-17 89.4 54 83.3
Gohir.D01G102177 Gossypium hirsutum HOM05D002578 ORTHO05D002698 3.7e-16 87.4 56 82.1
Sed0005264 Sechium edule HOM05D002578 ORTHO05D002698 4.9e-16 87.0 50 86.0
Nn070s42374 Nelumbo nucifera HOM05D002578 ORTHO05D002698 6.4e-16 86.7 48 89.6
Gohir.1Z049734 Gossypium hirsutum HOM05D002578 ORTHO05D002698 8.3e-16 86.3 47 89.4
Gorai.009G325200 Gossypium raimondii HOM05D002578 ORTHO05D002698 8.3e-16 86.3 47 89.4
Nitab4.5_0004697g0040 Nicotiana tabacum HOM05D002578 ORTHO05D002698 8.3e-16 86.3 54 81.5
SGA_v2.0_scaffold907G53717 Striga asiatica HOM05D002578 ORTHO05D002698 8.3e-16 86.3 53 81.1
PGR111G0094 Punica granatum HOM05D002578 ORTHO05D002698 1.9e-15 85.1 45 93.3
Gohir.1Z049366 Gossypium hirsutum HOM05D002578 ORTHO05D002698 2.4e-15 84.7 47 87.2
HanXRQChr16g0503671 Helianthus annuus HOM05D002578 ORTHO05D002698 3.2e-15 84.3 52 80.8
ATCG00810 Arabidopsis thaliana HOM05D002578 ORTHO05D002698 4.1e-15 84.0 49 85.7
Gohir.A12G024432 Gossypium hirsutum HOM05D002578 ORTHO05D002698 5.4e-15 83.6 42 95.2
Nitab4.5_0000382g0100 Nicotiana tabacum HOM05D002578 ORTHO05D002698 7.0e-15 83.2 54 77.8
Oeu060398.1 Olea europaea HOM05D002578 ORTHO05D002698 7.0e-15 83.2 52 80.8
AL2G20520 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 1.6e-14 82.0 49 83.7
AL2G21760 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 1.6e-14 82.0 49 83.7
BolSC35t60673H Brassica oleracea HOM05D002578 ORTHO05D002698 1.6e-14 82.0 49 83.7
PSO548G0035 Papaver somniferum HOM05D002578 ORTHO05D002698 1.6e-14 82.0 45 91.1
C09p40110 Brassica napus HOM05D002578 ORTHO05D002698 3.5e-14 80.9 49 83.7
BolC9t56906H Brassica oleracea HOM05D002578 ORTHO05D002698 3.5e-14 80.9 49 83.7
Lsat_1_v5_gn_5_168080 Lactuca sativa HOM05D002578 ORTHO05D002698 7.8e-14 79.7 45 86.7
AL1G45060 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 1.7e-13 78.6 49 79.6
RcHm_v2.0_CPg0501841 Rosa chinensis HOM05D002578 ORTHO05D002698 1.7e-13 78.6 43 90.7
TPR.G22135 Trifolium pratense HOM05D002578 ORTHO05D002698 1.7e-13 78.6 52 75.0
RcHm_v2.0_Chr1g0329561 Rosa chinensis HOM05D002578 ORTHO05D002698 3.0e-13 77.8 43 88.4
Ca_04123_v3 Cicer arietinum L. HOM05D002578 ORTHO05D002698 5.0e-13 77.0 47 80.9
FAN09G4709 Fragaria x ananassa HOM05D002578 ORTHO05D002698 8.6e-13 76.3 43 88.4
Lj2g0018876 Lotus japonicus HOM05D002578 ORTHO05D002698 8.6e-13 76.3 52 73.1
Cfa007862 Carpinus fangiana HOM05D002578 ORTHO05D002698 1.1e-12 75.9 49 75.5
CiPaw.03G067300 Carya illinoinensis HOM05D002578 ORTHO05D002698 5.6e-12 73.6 47 76.6
Ah.10g027310 Amaranthus hybridus HOM05D002578 ORTHO05D002698 7.3e-12 73.2 48 77.1
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 7.3e-12 73.2 48 77.1
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 7.3e-12 73.2 48 77.1
VMungo0464G0334 Vigna mungo HOM05D002578 ORTHO05D002698 7.3e-12 73.2 47 72.3
arahy.Tifrunner.gnm1.ann1.900JYR Arachis hypogaea HOM05D002578 ORTHO05D002698 1.2e-11 72.4 47 76.6
arahy.Tifrunner.gnm1.ann1.MT7PBJ Arachis hypogaea HOM05D002578 ORTHO05D002698 1.2e-11 72.4 47 76.6
Oeu054717.1 Olea europaea HOM05D002578 ORTHO05D002698 1.2e-11 72.4 49 73.5
Lj1g0008959 Lotus japonicus HOM05D002578 ORTHO05D002698 1.6e-11 72.0 52 67.3
Ciclev10005921m.g Citrus clementina HOM05D002578 ORTHO05D002698 2.1e-11 71.6 48 72.9
Lalb_Chr03g0038431 Lupinus albus HOM05D002578 ORTHO05D002698 2.1e-11 71.6 46 73.9
Medtr7g100410 Medicago truncatula HOM05D002578 ORTHO05D002698 2.1e-11 71.6 47 76.6
Glyma.05G001100 Glycine max HOM05D002578 ORTHO05D002698 2.8e-11 71.2 47 70.2
Phvul.004G001400 Phaseolus vulgaris HOM05D002578 ORTHO05D002698 3.6e-11 70.9 47 70.2
Psat1g052200 Pisum sativum HOM05D002578 ORTHO05D002698 4.7e-11 70.5 47 70.2
QL02p048586 Quercus lobata HOM05D002578 ORTHO05D002698 4.7e-11 70.5 47 74.5
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 6.2e-11 70.1 47 74.5
Glyma.19G001100 Glycine max HOM05D002578 ORTHO05D002698 1.4e-10 68.9 47 68.1
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 3.1e-10 67.8 37 83.8
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 3.1e-10 67.8 35 94.3
Lj2C1234G17 Lonicera japonica HOM05D002578 ORTHO05D002698 3.1e-10 67.8 37 89.2
Lj2P1239T81 Lonicera japonica HOM05D002578 ORTHO05D002698 3.1e-10 67.8 35 94.3
Lju5009P0T59 Lonicera japonica HOM05D002578 ORTHO05D002698 3.1e-10 67.8 35 94.3
HPP92_007212 Vanilla planifolia HOM05D002578 ORTHO05D002698 4.0e-10 67.4 48 72.9
Nitab4.5_0004376g0170 Nicotiana tabacum HOM05D002578 ORTHO05D009557 5.2e-10 67.0 53 69.8
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 6.8e-10 66.6 49 61.2
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.2e-09 65.9 45 68.9
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.2e-09 65.9 45 68.9
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.2e-09 65.9 45 68.9
BolSC29t60613H Brassica oleracea HOM05D002578 ORTHO05D002698 3.4e-09 64.3 35 88.6
ClCG04G000500 Citrullus lanatus HOM05D002578 ORTHO05D002698 3.4e-09 64.3 37 83.8
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.3e-08 62.4 37 83.8
BolC7t41707H Brassica oleracea HOM05D002578 ORTHO05D002698 1.7e-08 62.0 35 85.7
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 1.4e-07 58.9 35 82.9
SMO086G0008 Selaginella moellendorffii HOM05D002578 ORTHO05D002698 1.6e-06 55.5 47 61.7
Sc16g0004470 Simmondsia chinensis HOM05D000540 ORTHO05D000681 2.1e-06 55.1 39 74.4
Zm00001eb435110 Zea mays HOM05D002578 ORTHO05D002698 2.7e-06 54.7 46 58.7
Zm00001eb437150 Zea mays HOM05D002578 ORTHO05D002698 2.7e-06 54.7 46 58.7
MCO09G075 Micromonas commoda HOM05D002578 ORTHO05D002698 3.5e-06 54.3 40 62.5
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 6.0e-06 53.5 30 86.7
RcHm_v2.0_Chr6g0286361 Rosa chinensis HOM05D002578 ORTHO05D002698 7.8e-06 53.1 30 86.7


User provided reference genes

Program Settings