Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028617 Vanilla planifolia HOM05D004581 ORTHO05D006211 5.4e-53 210.7 103 100.0
Zm00001eb314430 Zea mays HOM05D004581 ORTHO05D006211 6.8e-40 167.2 92 88.0
Os09g0446200 Oryza sativa ssp. japonica HOM05D004581 ORTHO05D006211 5.8e-39 164.1 92 83.7
Aqoxy1G00145 Aquilegia oxysepala HOM05D004581 ORTHO05D006211 3.5e-36 154.8 91 81.3
PSO339G4020 Papaver somniferum HOM05D004581 ORTHO05D006211 4.6e-36 154.5 92 80.4
PSO384G2020 Papaver somniferum HOM05D004581 ORTHO05D006211 4.6e-36 154.5 92 80.4
MELO3C009016.2 Cucumis melo HOM05D004581 ORTHO05D006211 1.0e-35 153.3 92 79.3
CsaV3_4G031280 Cucumis sativus L. HOM05D004581 ORTHO05D006211 1.0e-35 153.3 92 79.3
Nn7g35977 Nelumbo nucifera HOM05D004581 ORTHO05D006211 1.0e-35 153.3 92 79.3
AL6G16770 Arabidopsis lyrata HOM05D004581 ORTHO05D006211 1.7e-35 152.5 92 78.3
AT5G06680 Arabidopsis thaliana HOM05D004581 ORTHO05D006211 1.7e-35 152.5 92 78.3
BcaB05g21654 Brassica carinata HOM05D004581 ORTHO05D006211 1.7e-35 152.5 92 78.3
Sp6g36190 Schrenkiella parvula HOM05D004581 ORTHO05D006211 1.7e-35 152.5 92 78.3
TAR369G0383 Trochodendron aralioides HOM05D004581 ORTHO05D006211 3.0e-35 151.8 92 79.3
AUR62015335 Chenopodium quinoa HOM05D004581 ORTHO05D006211 3.9e-35 151.4 92 78.3
Thhalv10012676m.g Eutrema salsugineum HOM05D004581 ORTHO05D006211 3.9e-35 151.4 92 77.2
TAR623G0668 Trochodendron aralioides HOM05D004581 ORTHO05D006211 3.9e-35 151.4 92 79.3
Carub.0006s0556 Capsella rubella HOM05D004581 ORTHO05D006211 5.1e-35 151.0 92 77.2
CARHR206520 Cardamine hirsuta HOM05D004581 ORTHO05D006211 5.1e-35 151.0 92 77.2
CSS0001135 Camellia sinensis var. sinensis HOM05D004581 ORTHO05D006211 6.6e-35 150.6 92 78.3
Ah.13g075710 Amaranthus hybridus HOM05D004581 ORTHO05D006211 8.6e-35 150.2 92 79.3
Aa31sc40G20 Aethionema arabicum HOM05D004581 ORTHO05D006211 1.5e-34 149.4 92 77.2
COL.COLO4_29354 Corchorus olitorius HOM05D004581 ORTHO05D006211 1.5e-34 149.4 92 76.1
MBI19_g17421_MAGBIO Magnolia biondii HOM05D004581 ORTHO05D006211 1.5e-34 149.4 92 76.1
ClCG04G001070 Citrullus lanatus HOM05D004581 ORTHO05D006211 1.9e-34 149.1 92 77.2
Gohir.A04G057400 Gossypium hirsutum HOM05D004581 ORTHO05D006211 2.5e-34 148.7 92 76.1
Gohir.D04G089200 Gossypium hirsutum HOM05D004581 ORTHO05D006211 2.5e-34 148.7 92 76.1
Gorai.012G099300 Gossypium raimondii HOM05D004581 ORTHO05D006211 2.5e-34 148.7 92 76.1
Manes.09G037300 Manihot esculenta HOM05D004581 ORTHO05D006211 2.5e-34 148.7 92 77.2
Hund19211 Selenicereus undatus HOM05D004581 ORTHO05D006211 2.5e-34 148.7 92 77.2
Lju124A23G70 Lonicera japonica HOM05D004581 ORTHO05D006211 3.3e-34 148.3 92 77.2
Lalb_Chr18g0048011 Lupinus albus HOM05D004581 ORTHO05D006211 3.3e-34 148.3 92 77.2
Sed0021834 Sechium edule HOM05D004581 ORTHO05D006211 4.3e-34 147.9 92 76.1
CiPaw.10G025500 Carya illinoinensis HOM05D004581 ORTHO05D006211 5.6e-34 147.5 92 76.1
ECA248G3562 Erigeron canadensis HOM05D004581 ORTHO05D006211 5.6e-34 147.5 92 73.9
C02p02810 Brassica napus HOM05D004581 ORTHO05D006211 7.3e-34 147.1 92 75.0
BolC2t06246H Brassica oleracea HOM05D004581 ORTHO05D006211 7.3e-34 147.1 92 75.0
BraA02t04889Z Brassica rapa HOM05D004581 ORTHO05D006211 7.3e-34 147.1 92 75.0
Duzib093G1426 Durio zibethinus HOM05D004581 ORTHO05D006211 7.3e-34 147.1 92 76.1
Lsat_1_v5_gn_5_165321 Lactuca sativa HOM05D004581 ORTHO05D006211 7.3e-34 147.1 92 76.1
Rhsim03G0004600 Rhododendron simsii HOM05D004581 ORTHO05D006211 7.3e-34 147.1 92 76.1
THA.LOC104809935 Tarenaya hassleriana HOM05D004581 ORTHO05D006211 7.3e-34 147.1 91 75.8
MSTRG.19916 Avicennia marina HOM05D004581 ORTHO05D006211 9.5e-34 146.7 92 75.0
CiPaw.09G028800 Carya illinoinensis HOM05D004581 ORTHO05D006211 9.5e-34 146.7 92 76.1
Eucgr.K01849 Eucalyptus grandis HOM05D004581 ORTHO05D006211 9.5e-34 146.7 92 75.0
Sabra16G0062700 Salix brachista HOM05D004581 ORTHO05D006211 9.5e-34 146.7 92 76.1
Dinv16368 Davidia involucrata HOM05D004581 ORTHO05D006211 1.2e-33 146.4 92 76.1
HanXRQChr01g0010041 Helianthus annuus HOM05D004581 ORTHO05D006211 1.2e-33 146.4 92 75.0
Potri.006G194200 Populus trichocarpa HOM05D004581 ORTHO05D006211 1.2e-33 146.4 92 76.1
Atru.chr8.1150 Acer truncatum HOM05D004581 ORTHO05D006211 1.6e-33 146.0 92 73.9
Ciclev10011052m.g Citrus clementina HOM05D004581 ORTHO05D006211 1.6e-33 146.0 92 73.9
DCAR_013660 Daucus carota HOM05D004581 ORTHO05D006211 2.8e-33 145.2 92 73.9
Migut.J01852 Erythranthe guttata HOM05D004581 ORTHO05D006211 2.8e-33 145.2 92 73.9
Potri.016G059900 Populus trichocarpa HOM05D004581 ORTHO05D006211 2.8e-33 145.2 92 75.0
Solyc09g009140.3 Solanum lycopersicum HOM05D004581 ORTHO05D006211 2.8e-33 145.2 92 73.9
Sopen09g003860 Solanum pennellii HOM05D004581 ORTHO05D006211 2.8e-33 145.2 92 73.9
Cc06_g15670 Coffea canephora HOM05D004581 ORTHO05D006211 3.6e-33 144.8 92 75.0
vmacro07891 Vaccinium macrocarpon HOM05D004581 ORTHO05D006211 3.6e-33 144.8 92 75.0
Glyma.03G146200 Glycine max HOM05D004581 ORTHO05D006211 4.7e-33 144.4 92 76.1
QL07p024331 Quercus lobata HOM05D004581 ORTHO05D006211 4.7e-33 144.4 92 75.0
QL07p024348 Quercus lobata HOM05D004581 ORTHO05D006211 4.7e-33 144.4 92 75.0
QL07p024412 Quercus lobata HOM05D004581 ORTHO05D006211 4.7e-33 144.4 92 75.0
Sabra06G0149000 Salix brachista HOM05D004581 ORTHO05D006211 4.7e-33 144.4 92 75.0
Cfa020147 Carpinus fangiana HOM05D004581 ORTHO05D006211 6.2e-33 144.1 92 75.0
SGA_v2.0_scaffold105G30506 Striga asiatica HOM05D004581 ORTHO05D006211 6.2e-33 144.1 92 71.7
Haze_20018 Corylus avellana HOM05D004581 ORTHO05D006211 8.1e-33 143.7 92 73.9
Peaxi162Scf00169g01812 Petunia axillaris HOM05D004581 ORTHO05D006211 8.1e-33 143.7 92 72.8
PGSC0003DMG400002716 Solanum tuberosum HOM05D004581 ORTHO05D006211 8.1e-33 143.7 92 72.8
arahy.Tifrunner.gnm1.ann1.U2Q4B5 Arachis hypogaea HOM05D004581 ORTHO05D006211 1.1e-32 143.3 92 72.8
Lj1g0024119 Lotus japonicus HOM05D004581 ORTHO05D006211 1.1e-32 143.3 92 75.0
PGR142G1146 Punica granatum HOM05D004581 ORTHO05D006211 1.1e-32 143.3 92 72.8
SalBow6G0811 Salvia bowleyana HOM05D004581 ORTHO05D006211 1.1e-32 143.3 92 73.9
Thecc.05G174500 Theobroma cacao HOM05D004581 ORTHO05D006211 1.1e-32 143.3 92 73.9
TWI53G1098 Tripterygium wilfordii HOM05D004581 ORTHO05D006211 1.1e-32 143.3 92 72.8
CAN.G824.31 Capsicum annuum HOM05D004581 ORTHO05D006211 1.4e-32 142.9 92 72.8
Sc25g0005070 Simmondsia chinensis HOM05D004581 ORTHO05D006211 1.4e-32 142.9 92 73.9
EL10Ac2g03990 Beta vulgaris HOM05D004581 ORTHO05D006211 1.8e-32 142.5 92 75.0
Nitab4.5_0000663g0140 Nicotiana tabacum HOM05D004581 ORTHO05D006211 1.8e-32 142.5 92 72.8
Nitab4.5_0006360g0040 Nicotiana tabacum HOM05D004581 ORTHO05D006211 1.8e-32 142.5 92 72.8
MD12G1055200 Malus domestica HOM05D004581 ORTHO05D006211 2.3e-32 142.1 92 73.9
FvH4_6g21970 Fragaria vesca HOM05D004581 ORTHO05D006211 3.1e-32 141.7 92 73.9
FAN05G2417 Fragaria x ananassa HOM05D004581 ORTHO05D006211 3.1e-32 141.7 92 73.9
Glyma.19G149500 Glycine max HOM05D004581 ORTHO05D006211 4.0e-32 141.4 92 75.0
arahy.Tifrunner.gnm1.ann1.6E61XV Arachis hypogaea HOM05D004581 ORTHO05D006211 5.2e-32 141.0 92 71.7
Psat3g067160 Pisum sativum HOM05D004581 ORTHO05D006211 5.2e-32 141.0 92 72.8
TPR.G35787 Trifolium pratense HOM05D004581 ORTHO05D006211 5.2e-32 141.0 92 72.8
Prupe.7G080400 Prunus persica HOM05D004581 ORTHO05D006211 6.8e-32 140.6 92 72.8
Ca_08535_v3 Cicer arietinum L. HOM05D004581 ORTHO05D006211 8.9e-32 140.2 92 72.8
FAN14G2436 Fragaria x ananassa HOM05D004581 ORTHO05D006211 8.9e-32 140.2 92 71.7
RcHm_v2.0_Chr3g0479271 Rosa chinensis HOM05D004581 ORTHO05D006211 8.9e-32 140.2 92 72.8
MD14G1054400 Malus domestica HOM05D004581 ORTHO05D006211 1.5e-31 139.4 92 71.7
Actinidia14375 Actinidia chinensis HOM05D004581 ORTHO05D006211 2.0e-31 139.0 92 70.7
CANSAT64G2519 Cannabis sativa HOM05D004581 ORTHO05D006211 2.0e-31 139.0 92 71.7
SHI31781 Sapria himalayana HOM05D004581 ORTHO05D006211 7.5e-31 137.1 92 72.8
VMungo1383G1342 Vigna mungo HOM05D004581 ORTHO05D006211 7.5e-31 137.1 92 72.8
unitig_0.g528 Utricularia gibba HOM05D004581 ORTHO05D006211 1.7e-30 136.0 92 69.6
ECA247G1565 Erigeron canadensis HOM05D004581 ORTHO05D006211 2.2e-30 135.6 92 71.7
TWI77G0968 Tripterygium wilfordii HOM05D004581 ORTHO05D006211 6.4e-30 134.0 92 68.5
Phvul.001G144000 Phaseolus vulgaris HOM05D004581 ORTHO05D006211 8.3e-30 133.7 92 71.7
Medtr7g093560 Medicago truncatula HOM05D004581 ORTHO05D006211 1.9e-29 132.5 92 70.7
FAN02G3358 Fragaria x ananassa HOM05D004581 ORTHO05D006211 2.1e-28 129.0 92 69.6
SMO356G0383 Selaginella moellendorffii HOM05D004581 ORTHO05D006211 4.6e-28 127.9 92 65.2
Duzib106G1052 Durio zibethinus HOM05D004581 ORTHO05D006211 7.8e-28 127.1 92 66.3
ATR0598G264 Amborella trichopoda HOM05D004581 ORTHO05D006211 1.0e-27 126.7 92 68.5
Pp3c20_16750 Physcomitrium patens HOM05D004581 ORTHO05D006211 1.3e-27 126.3 92 65.2
Pp3c24_16220 Physcomitrium patens HOM05D004581 ORTHO05D006211 1.3e-27 126.3 92 65.2
CDE04G2925 Ceratophyllum demersum HOM05D004581 ORTHO05D006211 6.6e-27 124.0 92 68.5
CDE06G1527 Ceratophyllum demersum HOM05D004581 ORTHO05D006211 6.6e-27 124.0 92 68.5
GSVIVG01033474001 Vitis vinifera HOM05D004581 ORTHO05D006211 2.4e-24 115.5 92 64.1
HanXRQChr15g0491321 Helianthus annuus HOM05D004581 ORTHO05D006211 1.2e-23 113.2 92 62.0
A10p29710 Brassica napus HOM05D004581 ORTHO05D006211 9.9e-23 110.2 71 77.5
BraA10t45012Z Brassica rapa HOM05D004581 ORTHO05D006211 9.9e-23 110.2 71 77.5
Cpa.g.sc85.62 Carica papaya HOM05D004581 ORTHO05D006211 9.9e-23 110.2 73 72.6
CBR_g7989 Chara braunii HOM05D004581 ORTHO05D006211 3.8e-22 108.2 92 59.8
Mapoly0001s0406 Marchantia polymorpha HOM05D004581 ORTHO05D006211 1.7e-19 99.4 93 54.8
Lsat_1_v5_gn_9_26020 Lactuca sativa HOM05D004581 ORTHO05D006211 2.3e-19 99.0 92 54.3
HPP92_028666 Vanilla planifolia HOM05D004581 ORTHO05D006211 4.0e-16 88.2 47 89.4
Actinidia32405 Actinidia chinensis HOM05D004581 ORTHO05D006211 5.3e-16 87.8 66 60.6
MCO03G564 Micromonas commoda HOM05D004581 ORTHO05D006211 1.9e-13 79.3 90 47.8
Actinidia22054 Actinidia chinensis HOM05D004581 ORTHO05D006211 4.2e-13 78.2 93 51.6
Cre11.g467745 Chlamydomonas reinhardtii HOM05D004581 ORTHO05D006211 4.6e-12 74.7 91 45.1
Actinidia14374 Actinidia chinensis HOM05D004581 ORTHO05D006211 1.7e-11 72.8 71 57.7
AagrBONN_evm.TU.Sc2ySwM_344.2102 Anthoceros agrestis HOM05D004581 ORTHO05D006211 1.7e-11 72.8 92 46.7
Ah.07g200190 Amaranthus hybridus HOM05D000211 ORTHO05D002285 1.9e-10 69.3 49 69.4
Zm00001eb056850 Zea mays HOM05D001691 ORTHO05D001704 2.5e-10 68.9 45 80.0
BcaC06g32554 Brassica carinata HOM05D004581 ORTHO05D006211 4.3e-10 68.2 65 55.4
HPP92_028667 Vanilla planifolia HOM05D004581 ORTHO05D006211 4.8e-09 64.7 32 96.9
Cfa021858 Carpinus fangiana HOM05D004581 ORTHO05D006211 7.6e-07 57.4 92 33.7


User provided reference genes

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