Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027357 Vanilla planifolia HOM05D002279 ORTHO05D002644 3.1e-162 575.1 296 100.0
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 1.3e-46 191.0 194 54.1
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 3.6e-33 146.4 73 97.3
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 9.8e-15 85.1 127 42.5
TAR636G1664 Trochodendron aralioides HOM05D002279 ORTHO05D002644 1.4e-13 81.3 211 31.8
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 5.4e-13 79.3 107 46.7
Zm00001eb400490 Zea mays HOM05D002279 ORTHO05D002644 5.4e-13 79.3 130 40.0
Prupe.8G215900 Prunus persica HOM05D002279 ORTHO05D002644 9.2e-13 78.6 195 36.4
RcHm_v2.0_Chr6g0286711 Rosa chinensis HOM05D002279 ORTHO05D002644 9.2e-13 78.6 202 36.6
Nn3g19779 Nelumbo nucifera HOM05D002279 ORTHO05D002644 2.0e-12 77.4 72 56.9
Cfa002480 Carpinus fangiana HOM05D002279 ORTHO05D002644 4.5e-12 76.3 200 33.5
MBI07_g23231_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 4.5e-12 76.3 146 39.0
Haze_24701 Corylus avellana HOM05D002279 ORTHO05D002644 5.9e-12 75.9 201 33.8
Nn1g02962 Nelumbo nucifera HOM05D002279 ORTHO05D002644 5.9e-12 75.9 211 32.7
MBI10_g26043_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 7.8e-12 75.5 202 36.1
Sc24g0003670 Simmondsia chinensis HOM05D002279 ORTHO05D002644 7.8e-12 75.5 200 32.0
GSVIVG01028421001 Vitis vinifera HOM05D002279 ORTHO05D002644 7.8e-12 75.5 125 41.6
CiPaw.03G270500 Carya illinoinensis HOM05D002279 ORTHO05D002644 1.0e-11 75.1 67 59.7
Gohir.A07G152100 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.0e-11 75.1 58 65.5
Gohir.D07G158300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.0e-11 75.1 58 65.5
Psat3g055080 Pisum sativum HOM05D002279 ORTHO05D002644 1.3e-11 74.7 192 32.8
AUR62025445 Chenopodium quinoa HOM05D002279 ORTHO05D002644 1.7e-11 74.3 184 34.8
CANSAT01G3007 Cannabis sativa HOM05D002279 ORTHO05D002644 2.3e-11 73.9 128 36.7
FAN27G1575 Fragaria x ananassa HOM05D002279 ORTHO05D002644 2.3e-11 73.9 197 38.1
COL.COLO4_10571 Corchorus olitorius HOM05D002279 ORTHO05D002644 2.9e-11 73.6 58 63.8
Gorai.001G181500 Gossypium raimondii HOM05D002279 ORTHO05D002644 2.9e-11 73.6 58 63.8
AUR62008790 Chenopodium quinoa HOM05D002279 ORTHO05D002644 3.8e-11 73.2 185 31.9
FvH4_2g20550 Fragaria vesca HOM05D002279 ORTHO05D002644 3.8e-11 73.2 195 37.4
ClCG06G001450 Citrullus lanatus HOM05D002279 ORTHO05D002644 5.0e-11 72.8 133 38.3
Glyma.03G167000 Glycine max HOM05D002279 ORTHO05D002644 6.6e-11 72.4 64 59.4
Lj1C73G6 Lonicera japonica HOM05D002279 ORTHO05D002644 6.6e-11 72.4 187 34.2
Phvul.001G164500 Phaseolus vulgaris HOM05D002279 ORTHO05D002644 6.6e-11 72.4 206 35.0
TAR365G0294 Trochodendron aralioides HOM05D002279 ORTHO05D002644 6.6e-11 72.4 201 30.3
EL10Ac7g17680 Beta vulgaris HOM05D002279 ORTHO05D002644 8.6e-11 72.0 185 31.9
Migut.D00473 Erythranthe guttata HOM05D002279 ORTHO05D002644 8.6e-11 72.0 199 32.2
QL09p041322 Quercus lobata HOM05D002279 ORTHO05D002644 8.6e-11 72.0 142 39.4
RcHm_v2.0_Chr1g0327141 Rosa chinensis HOM05D002279 ORTHO05D002644 8.6e-11 72.0 41 80.5
VMungo1383G2023 Vigna mungo HOM05D002279 ORTHO05D002644 8.6e-11 72.0 64 57.8
Aqoxy2G03747 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 1.1e-10 71.6 141 38.3
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.1e-10 71.6 58 62.1
Gorai.007G149700 Gossypium raimondii HOM05D002279 ORTHO05D002644 1.1e-10 71.6 58 62.1
vmacro14798 Vaccinium macrocarpon HOM05D002279 ORTHO05D002644 1.1e-10 71.6 69 52.2
Cpa.g.sc87.24 Carica papaya HOM05D002279 ORTHO05D002644 1.5e-10 71.2 210 31.0
Lj2A1143T49 Lonicera japonica HOM05D002279 ORTHO05D002644 1.5e-10 71.2 159 37.7
Actinidia37548 Actinidia chinensis HOM05D002279 ORTHO05D002644 1.9e-10 70.9 135 40.0
Duzib133G0328 Durio zibethinus HOM05D002279 ORTHO05D002644 1.9e-10 70.9 58 62.1
TPR.G20054 Trifolium pratense HOM05D002279 ORTHO05D002644 1.9e-10 70.9 63 57.1
CAN.G536.17 Capsicum annuum HOM05D002279 ORTHO05D002644 2.5e-10 70.5 72 54.2
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 2.5e-10 70.5 121 38.8
Gohir.D11G139400 Gossypium hirsutum HOM05D002279 ORTHO05D002644 2.5e-10 70.5 58 60.3
SGA_v2.0_scaffold1G00650 Striga asiatica HOM05D002279 ORTHO05D002644 2.5e-10 70.5 154 37.7
Ah.08g218250 Amaranthus hybridus HOM05D002279 ORTHO05D002644 3.3e-10 70.1 200 34.5
Gohir.A07G204300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 3.3e-10 70.1 41 78.0
Gohir.D07G210300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 3.3e-10 70.1 41 78.0
Gorai.001G237700 Gossypium raimondii HOM05D002279 ORTHO05D002644 3.3e-10 70.1 41 78.0
MD00G1060100 Malus domestica HOM05D002279 ORTHO05D002644 3.3e-10 70.1 197 33.5
MELO3C022388.2 Cucumis melo HOM05D002279 ORTHO05D002644 4.3e-10 69.7 139 38.1
Dinv34672 Davidia involucrata HOM05D002279 ORTHO05D002644 5.6e-10 69.3 155 34.8
Lalb_Chr01g0019511 Lupinus albus HOM05D002279 ORTHO05D002644 7.3e-10 68.9 43 72.1
Sed0023704 Sechium edule HOM05D002279 ORTHO05D002644 9.5e-10 68.6 133 39.8
Medtr7g098430 Medicago truncatula HOM05D002279 ORTHO05D002644 1.2e-09 68.2 63 54.0
Aa31LG1G20760 Aethionema arabicum HOM05D002279 ORTHO05D002644 1.6e-09 67.8 48 64.6
PSO017G4536 Papaver somniferum HOM05D002279 ORTHO05D002644 1.6e-09 67.8 57 63.2
THA.LOC104816099 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 1.6e-09 67.8 101 40.6
Thhalv10006844m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 2.1e-09 67.4 41 70.7
Lj1g0017598 Lotus japonicus HOM05D002279 ORTHO05D002644 2.1e-09 67.4 199 32.2
Aqoxy7G02303 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 2.8e-09 67.0 41 70.7
Lsat_1_v5_gn_8_92021 Lactuca sativa HOM05D002279 ORTHO05D002644 2.8e-09 67.0 158 34.8
Lalb_Chr20g0113651 Lupinus albus HOM05D002279 ORTHO05D002644 2.8e-09 67.0 43 72.1
Thecc.01G250900 Theobroma cacao HOM05D002279 ORTHO05D002644 2.8e-09 67.0 183 35.5
Aa31LG5G3310 Aethionema arabicum HOM05D002279 ORTHO05D002644 3.6e-09 66.6 41 73.2
Cc01_g17840 Coffea canephora HOM05D002279 ORTHO05D002644 3.6e-09 66.6 200 33.0
Ca_08738_v3 Cicer arietinum L. HOM05D002279 ORTHO05D002644 4.7e-09 66.2 41 73.2
Dinv16397 Davidia involucrata HOM05D002279 ORTHO05D002644 4.7e-09 66.2 128 38.3
Hma1.2p1_1930F.1_g307920 Hydrangea macrophylla HOM05D002279 ORTHO05D002644 4.7e-09 66.2 191 32.5
MD11G1043400 Malus domestica HOM05D002279 ORTHO05D002644 4.7e-09 66.2 46 67.4
Nitab4.5_0000845g0220 Nicotiana tabacum HOM05D002279 ORTHO05D002644 4.7e-09 66.2 139 34.5
Peaxi162Scf00043g02923 Petunia axillaris HOM05D002279 ORTHO05D002644 4.7e-09 66.2 127 37.8
CARHR003420 Cardamine hirsuta HOM05D002279 ORTHO05D002644 6.1e-09 65.9 41 70.7
CDE11G0963 Ceratophyllum demersum HOM05D002279 ORTHO05D002644 6.1e-09 65.9 198 35.9
CsaV3_6G007400 Cucumis sativus L. HOM05D002279 ORTHO05D002644 6.1e-09 65.9 138 37.7
Glyma.19G168100 Glycine max HOM05D002279 ORTHO05D002644 6.1e-09 65.9 142 37.3
Oeu015430.1 Olea europaea HOM05D002279 ORTHO05D002644 6.1e-09 65.9 203 32.5
SGA_v2.0_scaffold138G35188 Striga asiatica HOM05D002279 ORTHO05D002644 6.1e-09 65.9 41 73.2
Potri.014G192800 Populus trichocarpa HOM05D002279 ORTHO05D002644 8.0e-09 65.5 113 40.7
TWI18G0730 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 1.0e-08 65.1 191 33.0
C05p02340 Brassica napus HOM05D002279 ORTHO05D002644 1.4e-08 64.7 41 68.3
BolC5t29013H Brassica oleracea HOM05D002279 ORTHO05D002644 1.4e-08 64.7 41 68.3
BraA10t42523Z Brassica rapa HOM05D002279 ORTHO05D002644 1.4e-08 64.7 41 68.3
ATR0787G201 Amborella trichopoda HOM05D002279 ORTHO05D002644 2.3e-08 63.9 43 62.8
arahy.Tifrunner.gnm1.ann1.UG1CCZ Arachis hypogaea HOM05D002279 ORTHO05D002644 2.3e-08 63.9 193 32.6
Duzib211G0092 Durio zibethinus HOM05D002279 ORTHO05D002644 2.3e-08 63.9 183 33.9
Manes.13G040100 Manihot esculenta HOM05D002279 ORTHO05D002644 2.3e-08 63.9 118 40.7
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 2.3e-08 63.9 41 70.7
THA.LOC104826051 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 2.3e-08 63.9 41 68.3
A08p37110 Brassica napus HOM05D002279 ORTHO05D002644 3.0e-08 63.5 107 36.4
A10p02540 Brassica napus HOM05D002279 ORTHO05D002644 3.0e-08 63.5 41 65.9
Carub.0001s0323 Capsella rubella HOM05D002279 ORTHO05D002644 3.0e-08 63.5 109 36.7
HanXRQChr01g0015001 Helianthus annuus HOM05D002279 ORTHO05D002644 3.0e-08 63.5 179 34.1
Lsat_1_v5_gn_5_181380 Lactuca sativa HOM05D002279 ORTHO05D002644 3.0e-08 63.5 189 31.7
THA.LOC104801556 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 3.0e-08 63.5 40 70.0
arahy.Tifrunner.gnm1.ann1.CGPP17 Arachis hypogaea HOM05D002279 ORTHO05D002644 4.0e-08 63.2 193 32.1
DCAR_004690 Daucus carota HOM05D002279 ORTHO05D002644 4.0e-08 63.2 202 32.2
TWI12G1034 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 4.0e-08 63.2 195 34.4
AT1G04080 Arabidopsis thaliana HOM05D002279 ORTHO05D002644 5.2e-08 62.8 108 37.0
Potri.002G257100 Populus trichocarpa HOM05D002279 ORTHO05D002644 5.2e-08 62.8 59 55.9
unitig_22.g6301 Utricularia gibba HOM05D002279 ORTHO05D002644 5.2e-08 62.8 90 43.3
Sp1g02900 Schrenkiella parvula HOM05D002279 ORTHO05D002644 6.8e-08 62.4 43 60.5
Gohir.A13G102501 Gossypium hirsutum HOM05D002279 ORTHO05D002644 8.9e-08 62.0 50 62.0
Nitab4.5_0007760g0020 Nicotiana tabacum HOM05D002279 ORTHO05D002644 8.9e-08 62.0 187 34.2
Actinidia23695 Actinidia chinensis HOM05D002279 ORTHO05D026422 1.5e-07 61.2 157 32.5
BraA08t35610Z Brassica rapa HOM05D002279 ORTHO05D002644 1.5e-07 61.2 107 33.6
AL1G13680 Arabidopsis lyrata HOM05D002279 ORTHO05D002644 2.0e-07 60.8 108 37.0
Thhalv10003154m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 2.0e-07 60.8 95 37.9
PSO063G2201 Papaver somniferum HOM05D002279 ORTHO05D002644 2.0e-07 60.8 156 32.7
Sabra02G0195500 Salix brachista HOM05D002279 ORTHO05D002644 2.0e-07 60.8 41 65.9
ECA248G1198 Erigeron canadensis HOM05D002279 ORTHO05D002644 3.4e-07 60.1 152 38.2
Oeu052078.1 Olea europaea HOM05D002279 ORTHO05D002644 3.4e-07 60.1 165 32.1
BolC8t46891H Brassica oleracea HOM05D002279 ORTHO05D002644 5.7e-07 59.3 107 34.6
Atru.chr1.1182 Acer truncatum HOM05D002279 ORTHO05D002644 7.5e-07 58.9 195 30.3
BcaC07g36934 Brassica carinata HOM05D002279 ORTHO05D002644 7.5e-07 58.9 105 34.3
C08p00900 Brassica napus HOM05D002279 ORTHO05D002644 9.8e-07 58.5 107 33.6
Sp2g08790 Schrenkiella parvula HOM05D002279 ORTHO05D002644 1.3e-06 58.2 101 37.6
SEGI_21091 Sequoiadendron giganteum HOM05D002279 ORTHO05D002644 1.7e-06 57.8 77 44.2
Atru.chr5.1840 Acer truncatum HOM05D002279 ORTHO05D002644 2.2e-06 57.4 191 28.8
Ciclev10018866m.g Citrus clementina HOM05D002279 ORTHO05D002644 3.7e-06 56.6 198 28.8
DCAR_004701 Daucus carota HOM05D002279 ORTHO05D002644 3.7e-06 56.6 139 32.4


User provided reference genes

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