Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027213 Vanilla planifolia HOM05D003747 ORTHO05D005080 8.9e-208 726.9 411 100.0
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 3.1e-128 462.6 375 64.5
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 1.6e-127 460.3 372 64.2
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 1.6e-127 460.3 374 63.9
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 5.9e-127 458.4 378 64.3
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 7.7e-127 458.0 378 64.3
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 1.0e-126 457.6 373 64.1
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 4.2e-125 452.2 373 65.1
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 5.5e-125 451.8 375 63.7
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 4.7e-124 448.7 375 62.9
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 3.0e-123 446.0 376 62.0
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 3.0e-123 446.0 389 62.5
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 8.8e-123 444.5 390 62.8
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.5e-122 443.7 367 64.3
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 3.4e-122 442.6 375 62.4
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 5.7e-122 441.8 364 63.7
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 1.7e-121 440.3 405 61.0
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 2.2e-121 439.9 364 64.3
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 2.8e-121 439.5 361 62.6
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 3.7e-121 439.1 360 63.3
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 4.8e-121 438.7 364 63.5
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 4.8e-121 438.7 364 63.7
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 4.8e-121 438.7 363 63.6
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 8.3e-121 438.0 370 62.2
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 8.3e-121 438.0 363 63.9
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 8.3e-121 438.0 363 63.6
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.1e-120 437.6 363 63.9
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 1.1e-120 437.6 364 63.2
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.1e-120 437.6 362 63.3
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.1e-120 437.6 362 63.8
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.1e-120 437.6 362 63.3
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 2.4e-120 436.4 362 62.7
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 2.4e-120 436.4 364 62.6
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 4.1e-120 435.6 361 63.4
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 4.1e-120 435.6 363 63.6
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 5.4e-120 435.3 360 63.3
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 5.4e-120 435.3 385 62.9
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 5.4e-120 435.3 362 63.3
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 7.0e-120 434.9 363 63.4
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 9.1e-120 434.5 363 63.6
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 1.6e-119 433.7 363 63.6
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 2.0e-119 433.3 362 63.0
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 2.7e-119 433.0 363 62.8
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 2.7e-119 433.0 357 63.0
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 3.5e-119 432.6 365 62.5
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 3.5e-119 432.6 361 63.4
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 4.5e-119 432.2 362 63.0
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 4.5e-119 432.2 364 63.2
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 4.5e-119 432.2 373 60.6
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 5.9e-119 431.8 359 63.2
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 5.9e-119 431.8 357 62.7
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 5.9e-119 431.8 362 62.7
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 5.9e-119 431.8 362 62.4
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 1.0e-118 431.0 361 62.9
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.0e-118 431.0 361 62.6
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 1.0e-118 431.0 362 63.3
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 1.0e-118 431.0 362 63.3
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 1.0e-118 431.0 369 62.1
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 1.0e-118 431.0 362 62.7
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 1.3e-118 430.6 359 63.0
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 1.3e-118 430.6 365 61.4
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 1.3e-118 430.6 363 62.8
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.7e-118 430.3 362 63.0
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 1.7e-118 430.3 361 62.6
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 2.2e-118 429.9 361 62.6
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 2.2e-118 429.9 372 61.0
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 2.2e-118 429.9 372 59.4
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 2.2e-118 429.9 361 64.8
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 3.8e-118 429.1 365 62.7
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 3.8e-118 429.1 365 62.7
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 3.8e-118 429.1 362 63.3
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 5.0e-118 428.7 362 62.7
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 6.5e-118 428.3 378 60.1
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 8.5e-118 427.9 359 63.8
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 8.5e-118 427.9 359 61.6
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 8.5e-118 427.9 364 62.4
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 1.1e-117 427.6 366 60.4
CsaV3_1G045460 Cucumis sativus L. HOM05D003747 ORTHO05D005080 1.1e-117 427.6 359 62.4
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 1.1e-117 427.6 360 62.2
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.1e-117 427.6 361 62.6
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 1.5e-117 427.2 364 62.6
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 1.5e-117 427.2 359 62.7
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 1.9e-117 426.8 362 62.2
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 1.9e-117 426.8 360 62.8
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 1.9e-117 426.8 361 62.6
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 2.5e-117 426.4 362 62.2
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 2.5e-117 426.4 362 62.2
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 2.5e-117 426.4 359 62.7
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 2.5e-117 426.4 359 62.4
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 3.2e-117 426.0 374 61.5
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 3.2e-117 426.0 364 62.4
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 3.2e-117 426.0 364 62.4
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 3.2e-117 426.0 363 61.7
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 3.2e-117 426.0 359 62.7
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 4.2e-117 425.6 359 62.7
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 4.2e-117 425.6 363 62.5
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 4.2e-117 425.6 360 66.1
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 4.2e-117 425.6 361 62.6
FAN14G4182 Fragaria x ananassa HOM05D003747 ORTHO05D005080 4.2e-117 425.6 361 62.9
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 4.2e-117 425.6 359 62.1
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 5.5e-117 425.2 361 61.8
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 7.2e-117 424.9 360 66.1
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 7.2e-117 424.9 366 62.3
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 1.2e-116 424.1 388 58.5
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 1.2e-116 424.1 369 62.3
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 1.6e-116 423.7 363 62.0
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.6e-116 423.7 361 61.5
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 2.1e-116 423.3 359 62.7
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 2.7e-116 422.9 361 62.0
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 2.7e-116 422.9 361 62.9
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 6.1e-116 421.8 361 61.8
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 2.3e-115 419.9 374 59.9
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 3.0e-115 419.5 364 61.5
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 4.0e-115 419.1 364 63.2
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 6.8e-115 418.3 359 61.3
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 1.2e-114 417.5 360 61.4
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 1.2e-114 417.5 363 61.4
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 3.4e-114 416.0 341 64.5
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 3.4e-114 416.0 365 61.6
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 5.7e-114 415.2 365 59.5
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 9.8e-114 414.5 359 61.8
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 2.2e-113 413.3 363 61.4
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 3.5e-111 406.0 345 61.7
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 5.9e-111 405.2 363 60.3
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 1.3e-110 404.1 418 54.5
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 2.9e-110 402.9 394 55.8
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 1.2e-108 397.5 369 58.3
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 1.6e-108 397.1 359 61.3
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 3.6e-108 396.0 332 62.7
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 4.9e-105 385.6 374 57.8
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 3.2e-104 382.9 332 61.4
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 5.4e-104 382.1 374 57.5
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 5.4e-104 382.1 384 55.2
CDE10G1342 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 6.2e-100 368.6 414 49.3
CsaV3_UNG233280 Cucumis sativus L. HOM05D003747 ORTHO05D005080 6.8e-99 365.2 343 58.0
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 4.4e-98 362.5 352 59.1
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 1.3e-97 360.9 361 55.7
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 3.7e-97 359.4 378 51.6
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.1e-91 341.3 363 52.6
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 7.3e-85 318.5 373 50.4
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 2.1e-84 317.0 292 58.6
HPP92_006843 Vanilla planifolia HOM05D003747 ORTHO05D005080 4.0e-83 312.8 373 47.5
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 1.5e-82 310.8 381 47.2
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 1.7e-81 307.4 359 49.6
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 1.4e-80 304.3 382 46.6
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 5.4e-80 302.4 354 48.3
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 3.6e-76 289.7 374 44.7
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.4e-72 277.7 380 43.4
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 1.1e-61 241.5 430 37.7
FAN05G3899 Fragaria x ananassa HOM05D003747 ORTHO05D005080 4.2e-48 196.4 199 55.3
FAN20G0559 Fragaria x ananassa HOM05D003747 ORTHO05D005080 4.2e-48 196.4 199 55.3
FAN12G1591 Fragaria x ananassa HOM05D003747 ORTHO05D005080 5.5e-48 196.1 200 54.5
FAN03G1393 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.4e-43 180.6 173 56.6
HanXRQChr13g0424291 Helianthus annuus HOM05D003747 ORTHO05D005080 3.4e-42 176.8 227 45.4
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.5e-34 149.8 94 78.7
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.5e-34 149.8 94 78.7
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.9e-33 147.1 94 77.7
Rhsim06G0013900 Rhododendron simsii HOM05D003747 ORTHO05D005080 6.9e-27 125.9 188 42.0
Rhsim06G0014800 Rhododendron simsii HOM05D003747 ORTHO05D005080 6.9e-27 125.9 188 42.0
Lj3A743G72 Lonicera japonica HOM05D000041 ORTHO05D000452 1.2e-23 115.2 89 60.7
Lj3A744G93 Lonicera japonica HOM05D000041 ORTHO05D000452 7.9e-23 112.5 89 58.4
Pp3c1_6530 Physcomitrium patens HOM05D003747 ORTHO05D005080 3.9e-22 110.2 88 60.2
Lsat_1_v5_gn_4_36661 Lactuca sativa HOM05D003747 ORTHO05D005080 1.1e-21 108.6 92 59.8
Zm00001eb159680 Zea mays HOM05D003747 ORTHO05D029724 2.6e-21 107.5 239 33.5
Zm00001eb026790 Zea mays HOM05D003747 ORTHO05D029724 6.3e-20 102.8 239 32.6
Lj3A744G94 Lonicera japonica HOM05D000041 ORTHO05D004955 3.8e-17 93.6 72 58.3
Cpa.g.sc99.31 Carica papaya HOM05D003747 ORTHO05D005080 2.1e-15 87.8 94 47.9
Nn5g30522 Nelumbo nucifera HOM05D003747 ORTHO05D005080 2.7e-15 87.4 62 64.5
Lsat_1_v5_gn_8_75581 Lactuca sativa HOM05D000041 ORTHO05D000452 1.0e-14 85.5 83 49.4
HanXRQChr14g0454921 Helianthus annuus HOM05D000041 ORTHO05D000452 4.1e-11 73.6 90 44.4
HanXRQChr17g0545051 Helianthus annuus HOM05D000041 ORTHO05D000452 4.1e-11 73.6 90 44.4
Lj3A751T54 Lonicera japonica HOM05D000041 ORTHO05D000452 1.2e-10 72.0 98 36.7
Rhsim06G0014000 Rhododendron simsii HOM05D003747 ORTHO05D005080 1.6e-07 61.6 46 65.2
Lj3A751T55 Lonicera japonica HOM05D000041 ORTHO05D000452 4.7e-07 60.1 99 32.3
Aqoxy4G00398 Aquilegia oxysepala HOM05D003747 ORTHO05D078672 6.8e-06 56.2 61 45.9


User provided reference genes

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