Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 7.3e-147 523.9 261 100.0
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 8.5e-79 297.7 271 61.3
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 2.5e-75 286.2 271 59.0
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 2.5e-75 286.2 198 74.2
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 1.7e-74 283.5 226 65.9
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 2.4e-73 279.6 284 55.6
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 6.9e-73 278.1 238 62.6
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 9.1e-73 277.7 220 66.4
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 1.2e-72 277.3 267 58.4
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 1.2e-72 277.3 266 58.6
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 2.6e-72 276.2 218 67.4
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.6e-72 276.2 267 58.1
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 2.6e-72 276.2 277 56.7
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 3.4e-72 275.8 225 65.3
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 4.5e-72 275.4 198 71.2
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.0e-71 274.2 267 58.4
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.3e-71 273.9 198 71.2
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 1.3e-71 273.9 213 66.7
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 1.7e-71 273.5 206 69.4
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.7e-71 273.5 244 63.1
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 1.7e-71 273.5 198 70.7
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.7e-71 273.5 276 55.8
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.7e-71 273.5 272 57.7
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 2.2e-71 273.1 197 71.6
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 2.9e-71 272.7 268 58.2
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 2.9e-71 272.7 199 69.8
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 2.9e-71 272.7 199 70.9
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 3.8e-71 272.3 252 59.5
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 3.8e-71 272.3 273 57.9
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 3.8e-71 272.3 200 70.0
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 3.8e-71 272.3 198 71.2
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 3.8e-71 272.3 220 65.5
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 5.0e-71 271.9 277 56.0
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 8.5e-71 271.2 198 70.2
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 8.5e-71 271.2 199 70.9
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 8.5e-71 271.2 199 70.4
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 8.5e-71 271.2 214 65.9
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 8.5e-71 271.2 203 69.5
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 8.5e-71 271.2 214 65.9
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 1.1e-70 270.8 277 56.0
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.1e-70 270.8 200 70.0
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.1e-70 270.8 276 55.1
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 1.4e-70 270.4 203 70.0
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 1.9e-70 270.0 223 64.6
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 1.9e-70 270.0 198 70.2
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 2.5e-70 269.6 198 70.2
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 2.5e-70 269.6 265 57.4
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.5e-70 269.6 198 69.7
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.2e-70 269.2 269 56.9
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 3.2e-70 269.2 199 69.3
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 4.2e-70 268.9 253 58.9
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 5.5e-70 268.5 198 70.2
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 5.5e-70 268.5 234 60.7
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 5.5e-70 268.5 200 69.0
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 5.5e-70 268.5 199 70.4
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 7.2e-70 268.1 213 65.3
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 7.2e-70 268.1 198 69.7
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 7.2e-70 268.1 268 57.1
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 7.2e-70 268.1 203 68.5
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 9.4e-70 267.7 198 70.7
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 9.4e-70 267.7 198 69.2
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 9.4e-70 267.7 215 66.5
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.6e-69 266.9 243 60.9
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 1.6e-69 266.9 277 54.9
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.6e-69 266.9 243 59.7
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.1e-69 266.5 229 62.9
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 4.7e-69 265.4 220 64.5
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 6.1e-69 265.0 198 70.2
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 7.9e-69 264.6 213 65.3
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 7.9e-69 264.6 243 59.7
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 7.9e-69 264.6 198 70.2
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 7.9e-69 264.6 198 68.2
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.0e-68 264.2 209 65.6
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 1.0e-68 264.2 251 58.6
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.4e-68 263.8 246 59.8
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 1.4e-68 263.8 198 68.2
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 1.8e-68 263.5 266 55.3
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 2.3e-68 263.1 198 69.7
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.9e-68 262.3 234 60.3
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 3.9e-68 262.3 198 68.2
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 3.9e-68 262.3 190 71.1
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 6.7e-68 261.5 201 67.2
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 6.7e-68 261.5 213 64.3
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 6.7e-68 261.5 198 67.7
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 6.7e-68 261.5 216 64.4
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 6.7e-68 261.5 198 66.7
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 6.7e-68 261.5 215 63.7
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 8.8e-68 261.2 265 56.6
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.1e-67 260.8 209 65.6
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.0e-67 260.0 231 59.3
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 2.6e-67 259.6 201 66.2
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 2.6e-67 259.6 201 66.2
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 4.4e-67 258.8 198 69.7
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 4.4e-67 258.8 198 67.2
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 5.7e-67 258.5 253 58.1
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 5.7e-67 258.5 189 68.8
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 5.7e-67 258.5 215 63.3
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 4.8e-66 255.4 224 63.8
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.3e-66 255.0 190 67.9
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 8.2e-66 254.6 206 66.5
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.1e-65 254.2 193 68.4
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 1.4e-65 253.8 243 57.6
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 1.8e-65 253.4 229 60.7
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.1e-65 252.7 267 53.2
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.1e-65 252.7 188 68.1
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.1e-65 252.7 188 68.1
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.1e-65 252.3 190 67.4
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 7.0e-65 251.5 231 59.7
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.0e-65 251.5 188 69.1
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 2.6e-64 249.6 196 66.8
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 4.5e-64 248.8 243 56.8
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 1.0e-63 247.7 188 67.0
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.3e-63 247.3 188 67.0
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 8.5e-63 244.6 191 64.9
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.9e-62 243.4 191 65.4
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 2.3e-60 236.5 243 52.7
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 4.4e-59 232.3 196 60.7
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 5.7e-59 231.9 179 69.3
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 2.8e-58 229.6 265 52.1
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.3e-57 225.3 257 50.6
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 7.0e-57 224.9 254 54.7
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 3.5e-56 222.6 219 56.6
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 3.5e-56 222.6 249 50.6
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.3e-55 220.7 206 59.7
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 2.5e-54 216.5 166 68.7
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 2.5e-54 216.5 198 60.6
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 6.8e-52 208.4 166 67.5
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 2.6e-51 206.5 154 68.2
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 3.4e-51 206.1 230 53.0
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 1.7e-50 203.8 152 69.1
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 2.2e-50 203.4 153 68.6
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 3.7e-50 202.6 200 58.5
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.4e-49 200.7 244 48.4
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.4e-49 199.9 206 55.8
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 8.5e-47 191.4 124 78.2
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-46 191.0 175 58.3
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 1.2e-45 187.6 148 66.2
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.3e-44 183.3 184 56.5
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.3e-44 183.3 151 65.6
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.0e-43 180.3 162 62.3
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.3e-42 177.6 218 50.5
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 4.1e-41 172.6 212 50.5
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.7e-40 169.9 174 55.2
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 1.0e-39 167.9 197 41.6
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 2.3e-39 166.8 146 59.6
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 4.0e-36 156.0 153 54.9
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 5.2e-36 155.6 154 53.2
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 3.2e-33 146.4 167 54.5
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 4.4e-27 125.9 79 82.3
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 5.8e-27 125.6 133 53.4
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 5.4e-25 119.0 221 35.3
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 7.0e-25 118.6 131 51.1
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 2.7e-24 116.7 128 50.8
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.0e-23 114.8 223 35.0
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 3.9e-23 112.8 188 35.1
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.1e-22 111.3 81 71.6
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 2.4e-17 93.6 145 37.9
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 2.3e-15 87.0 61 68.9
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 3.0e-15 86.7 59 69.5
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 2.5e-14 83.6 57 71.9
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 4.1e-09 66.2 45 71.1
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 5.4e-09 65.9 43 62.8
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.1e-09 65.5 40 70.0
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 5.1e-07 59.3 55 49.1
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 6.6e-07 58.9 37 67.6
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 1.1e-06 58.2 98 36.7


User provided reference genes

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