Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 1.1e-184 649.8 328 100.0
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 2.2e-92 343.2 257 70.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 3.8e-92 342.4 296 64.2
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.1e-91 340.9 234 74.4
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.9e-91 340.1 268 66.4
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 1.2e-90 337.4 251 70.1
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 4.6e-90 335.5 254 69.3
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 4.6e-90 335.5 259 67.2
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 1.3e-89 334.0 309 61.5
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 2.3e-89 333.2 218 78.0
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 5.1e-89 332.0 217 77.9
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.1e-88 330.9 235 68.9
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.5e-88 330.5 224 75.0
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 1.5e-88 330.5 251 68.9
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 1.9e-88 330.1 218 77.1
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 1.9e-88 330.1 223 73.5
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 4.3e-88 328.9 240 71.2
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 4.3e-88 328.9 215 74.4
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 9.6e-88 327.8 242 68.6
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 1.3e-87 327.4 241 69.3
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.6e-87 327.0 213 77.0
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 2.8e-87 326.2 219 77.2
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 4.8e-87 325.5 217 75.6
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 6.2e-87 325.1 227 71.8
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 6.2e-87 325.1 216 75.0
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 8.1e-87 324.7 256 69.1
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.1e-86 324.3 231 71.4
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 1.1e-86 324.3 216 76.9
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.4e-86 323.9 219 76.7
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 2.4e-86 323.2 228 74.6
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 3.1e-86 322.8 243 70.0
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 4.0e-86 322.4 287 62.4
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 9.0e-86 321.2 214 74.8
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 9.0e-86 321.2 231 72.7
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 1.2e-85 320.9 215 74.9
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 1.2e-85 320.9 228 73.2
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 1.2e-85 320.9 215 74.0
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 2.0e-85 320.1 220 72.7
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 2.0e-85 320.1 220 72.7
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 2.0e-85 320.1 217 75.6
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 2.0e-85 320.1 215 73.5
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 2.0e-85 320.1 215 73.5
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 2.6e-85 319.7 229 71.6
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 2.6e-85 319.7 242 67.4
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 2.6e-85 319.7 227 72.2
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 2.6e-85 319.7 244 68.0
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 5.8e-85 318.5 241 69.3
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 1.3e-84 317.4 225 72.4
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.3e-84 317.4 206 77.7
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.7e-84 317.0 218 74.8
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 1.7e-84 317.0 242 67.4
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.7e-84 317.0 193 82.4
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 2.2e-84 316.6 226 69.5
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 2.2e-84 316.6 217 74.2
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 2.9e-84 316.2 217 73.7
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 2.9e-84 316.2 217 73.7
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 2.9e-84 316.2 259 64.1
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 2.9e-84 316.2 217 74.2
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 3.8e-84 315.8 205 77.6
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 4.9e-84 315.5 209 74.6
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.2e-83 312.8 217 73.7
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 4.2e-83 312.4 217 73.7
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 5.5e-83 312.0 217 73.7
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 7.1e-83 311.6 217 73.7
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.1e-83 311.6 217 73.7
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.2e-82 310.8 209 76.1
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.2e-82 310.8 206 77.2
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.6e-82 310.5 217 73.3
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 2.1e-82 310.1 209 76.1
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.1e-82 310.1 204 75.0
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 2.7e-82 309.7 209 76.1
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 3.5e-82 309.3 209 76.1
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 4.6e-82 308.9 239 68.6
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 4.6e-82 308.9 209 75.6
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 4.6e-82 308.9 206 76.7
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 7.9e-82 308.1 283 60.1
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.0e-81 307.8 202 77.2
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 1.0e-81 307.8 189 80.4
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 1.0e-81 307.8 234 67.1
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 1.3e-81 307.4 206 76.7
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.3e-81 307.4 206 76.7
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 2.3e-81 306.6 202 76.7
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 2.3e-81 306.6 247 67.6
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.0e-81 306.2 206 76.2
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 6.7e-81 305.1 225 70.7
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 8.7e-81 304.7 225 70.2
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 8.7e-81 304.7 240 67.1
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.1e-80 304.3 194 79.4
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 3.3e-80 302.8 211 69.2
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.3e-79 300.8 306 56.9
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 4.8e-79 298.9 216 70.4
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 6.2e-79 298.5 195 75.4
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 6.2e-79 298.5 203 72.9
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 6.9e-78 295.0 195 75.4
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.5e-77 293.9 203 72.9
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 2.0e-77 293.5 204 74.5
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 2.6e-77 293.1 236 67.4
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 5.8e-77 292.0 204 74.0
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 5.8e-77 292.0 201 73.1
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 1.0e-76 291.2 203 71.9
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.0e-76 291.2 215 69.8
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 3.8e-76 289.3 194 76.3
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 4.9e-76 288.9 299 54.8
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.1e-75 287.7 194 75.8
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 1.1e-75 287.7 211 70.1
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 1.5e-72 277.3 165 83.0
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 6.9e-70 268.5 217 61.8
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 7.2e-67 258.5 244 57.8
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.2e-61 241.1 202 58.9
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 1.5e-61 240.7 202 65.3
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 4.5e-61 239.2 183 62.3
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 3.1e-54 216.5 142 75.4
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 8.5e-52 208.4 159 62.3
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 6.1e-50 202.2 206 49.5
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.0e-49 201.4 195 51.3
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 1.5e-48 197.6 185 53.0
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 1.1e-46 191.4 177 52.0
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 7.0e-46 188.7 122 77.9
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 3.8e-44 183.0 194 46.9
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 2.9e-36 156.8 143 60.1
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 3.4e-32 143.3 158 53.8
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 1.5e-24 117.9 143 39.2
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 3.8e-20 103.2 65 78.5
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 4.0e-17 93.2 85 64.7
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 4.4e-16 89.7 53 81.1
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 2.7e-13 80.5 61 67.2


User provided reference genes

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