Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.8e-227 791.6 388 100.0
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 6.8e-125 451.4 311 72.3
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 3.0e-120 436.0 325 70.2
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 2.1e-118 429.9 328 67.7
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 3.6e-118 429.1 327 68.8
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 6.2e-118 428.3 321 68.8
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 8.1e-118 427.9 333 65.2
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 8.9e-117 424.5 329 65.3
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 3.4e-116 422.5 324 67.0
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 4.4e-116 422.2 317 67.2
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.4e-116 422.2 316 68.0
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.4e-116 422.2 316 68.0
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.7e-115 420.2 329 66.9
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 2.9e-115 419.5 325 66.2
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 4.9e-115 418.7 316 69.0
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 6.4e-115 418.3 315 67.0
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.1e-114 417.5 316 68.7
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.4e-114 417.2 335 64.8
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 2.4e-114 416.4 328 66.5
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 7.1e-114 414.8 315 66.3
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 9.2e-114 414.5 330 64.8
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.7e-113 412.9 316 65.8
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 3.5e-113 412.5 314 66.2
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 4.6e-113 412.1 316 66.8
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 6.0e-113 411.8 315 66.0
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 6.0e-113 411.8 348 62.6
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 7.8e-113 411.4 315 67.3
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.8e-113 411.4 357 60.8
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.0e-112 411.0 329 65.3
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.0e-112 411.0 313 69.0
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.3e-112 410.6 323 66.9
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.7e-112 410.2 318 66.0
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 2.3e-112 409.8 317 68.1
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.0e-112 409.5 317 66.2
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.1e-112 408.7 316 65.8
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 6.6e-112 408.3 314 65.3
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 8.6e-112 407.9 317 67.2
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 8.6e-112 407.9 316 65.2
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 8.6e-112 407.9 323 64.7
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 8.6e-112 407.9 317 65.9
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.1e-111 407.5 331 62.8
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.5e-111 407.1 319 65.2
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 4.3e-111 405.6 344 64.0
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 4.3e-111 405.6 322 64.9
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 5.6e-111 405.2 324 64.2
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 7.3e-111 404.8 314 65.9
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 9.5e-111 404.4 325 63.7
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.2e-110 404.1 316 67.4
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.8e-110 402.9 315 66.3
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 3.6e-110 402.5 319 66.8
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 3.6e-110 402.5 317 64.7
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 4.7e-110 402.1 319 63.9
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 4.7e-110 402.1 324 63.9
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 6.2e-110 401.7 325 63.4
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 6.2e-110 401.7 316 64.2
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.1e-109 401.0 316 66.8
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.1e-109 401.0 320 64.4
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.4e-109 400.6 319 65.8
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.0e-109 399.1 241 79.3
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 4.0e-109 399.1 328 64.0
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 5.2e-109 398.7 316 63.9
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 6.8e-109 398.3 330 62.1
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 6.8e-109 398.3 324 65.4
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 1.2e-108 397.5 316 63.9
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.5e-108 397.1 323 65.6
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.0e-108 396.7 321 65.7
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 2.0e-108 396.7 321 65.7
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 4.4e-108 395.6 318 63.2
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 5.8e-108 395.2 317 64.0
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 5.8e-108 395.2 317 64.0
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 7.6e-108 394.8 317 64.7
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 7.6e-108 394.8 322 64.0
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 7.6e-108 394.8 311 64.6
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.3e-107 394.0 317 63.4
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.3e-107 394.0 314 64.3
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.7e-107 393.7 321 63.6
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.7e-107 393.7 316 63.9
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.2e-107 393.3 319 63.9
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 2.2e-107 393.3 318 63.5
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 2.9e-107 392.9 337 60.2
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 2.9e-107 392.9 328 64.6
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 6.4e-107 391.7 317 64.0
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.6e-105 387.1 315 62.5
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.6e-105 387.1 316 62.0
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 2.1e-105 386.7 317 62.8
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 4.6e-105 385.6 329 61.4
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.3e-104 384.0 309 63.8
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.3e-104 384.0 317 61.8
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.1e-103 380.9 326 61.0
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.5e-103 380.6 318 63.5
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 2.8e-102 376.3 329 60.5
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 6.2e-102 375.2 314 62.4
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-101 374.0 296 65.2
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.4e-101 373.2 315 60.6
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 3.4e-100 369.4 314 59.6
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 7.6e-100 368.2 310 62.3
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 9.9e-100 367.9 285 67.4
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 6.4e-99 365.2 317 62.8
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 1.9e-98 363.6 331 57.7
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.2e-97 360.9 287 65.5
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.6e-97 360.5 286 67.1
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.6e-97 360.5 318 60.4
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 2.3e-96 356.7 289 64.4
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 5.1e-96 355.5 325 60.6
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 8.7e-96 354.8 300 61.7
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.7e-96 354.8 245 71.0
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 8.7e-96 354.8 323 59.4
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 9.6e-95 351.3 220 77.7
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 4.8e-94 349.0 300 63.0
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.9e-90 337.0 219 75.3
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 5.4e-90 335.5 285 63.5
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 1.2e-89 334.3 294 61.2
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.0e-88 331.3 323 56.3
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.3e-86 324.3 308 57.1
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.6e-86 323.9 285 60.7
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 8.1e-86 321.6 334 50.6
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.2e-83 313.5 289 56.7
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 6.4e-83 312.0 267 60.3
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.9e-82 310.5 276 60.5
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 9.3e-82 308.1 236 66.1
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 3.1e-77 293.1 234 65.4
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.5e-76 289.3 268 58.2
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.2e-70 270.4 232 59.5
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.1e-69 268.1 243 55.1
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 3.1e-69 266.5 233 57.9
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 5.9e-68 262.3 285 54.0
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.9e-68 262.3 158 77.8
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 1.0e-64 251.5 172 68.6
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.4e-61 240.4 239 56.5
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.6e-57 227.6 332 43.7
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 5.7e-55 219.2 206 55.8
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 4.8e-54 216.1 225 48.4
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.1e-53 214.9 228 54.4
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.4e-53 213.8 145 71.7
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.6e-52 210.3 141 71.6
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 2.6e-52 210.3 194 58.8
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.6e-52 210.3 216 55.1
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.6e-52 210.3 216 55.1
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.5e-52 209.9 191 60.2
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 4.5e-52 209.5 226 54.9
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 8.5e-51 205.3 228 51.8
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 2.3e-48 197.2 248 46.4
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.1e-47 194.9 224 47.3
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 9.4e-42 175.3 114 71.9
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 2.7e-41 173.7 244 43.0
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 2.7e-41 173.7 187 56.1
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 8.3e-38 162.2 148 50.7
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.4e-37 161.4 138 59.4
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.4e-37 161.4 245 35.9
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.4e-37 161.4 154 52.6
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.4e-37 159.5 112 66.1
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 3.7e-30 136.7 153 48.4
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 3.7e-30 136.7 153 48.4
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 4.9e-30 136.3 151 48.3
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 8.3e-30 135.6 153 48.4
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 2.8e-25 120.6 82 70.7
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.0e-24 117.1 98 58.2
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 4.0e-24 116.7 188 42.6
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 5.4e-21 106.3 80 65.0
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.6e-20 104.8 95 51.6
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 7.8e-20 102.4 105 44.8
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.3e-19 101.7 66 62.1
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 2.3e-19 100.9 69 60.9
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.3e-19 100.9 267 35.2
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 2.9e-19 100.5 116 47.4
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 7.3e-18 95.9 95 47.4
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 1.2e-17 95.1 62 64.5
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 1.2e-17 95.1 62 64.5
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.0e-16 92.0 62 62.9
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 1.8e-16 91.3 99 44.4
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 4.0e-16 90.1 125 45.6
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 8.9e-16 89.0 67 58.2
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 8.9e-16 89.0 67 58.2
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.5e-15 88.2 67 55.2
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.5e-15 88.2 67 55.2
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.3e-14 85.1 77 58.4
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 3.7e-14 83.6 173 39.3
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 3.7e-14 83.6 113 48.7
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 4.9e-14 83.2 97 49.5
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 7.0e-13 79.3 106 41.5
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 3.7e-06 57.0 70 41.4
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 6.4e-06 56.2 71 42.3


User provided reference genes

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