Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.0e-182 643.3 326 100.0
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.4e-179 632.9 324 98.5
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 3.2e-128 462.2 299 77.6
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 5.5e-128 461.5 298 76.5
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 4.7e-127 458.4 329 70.8
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 1.0e-126 457.2 290 77.6
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 3.0e-126 455.7 306 74.8
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 4.0e-126 455.3 286 77.3
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 4.0e-126 455.3 311 74.0
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 5.2e-126 454.9 291 77.7
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 6.8e-126 454.5 333 70.0
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 6.8e-126 454.5 316 72.5
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 6.8e-126 454.5 328 69.8
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.2e-125 453.8 277 80.1
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.5e-125 453.4 292 77.7
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 1.5e-125 453.4 330 71.5
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 2.0e-125 453.0 290 77.9
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 2.0e-125 453.0 289 78.2
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 2.0e-125 453.0 326 70.6
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 4.4e-125 451.8 281 79.4
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 4.4e-125 451.8 276 79.3
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 5.7e-125 451.4 326 71.2
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.7e-125 451.4 276 78.6
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 7.5e-125 451.1 326 70.2
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 9.8e-125 450.7 290 77.2
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 1.3e-124 450.3 308 73.4
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 1.7e-124 449.9 290 78.6
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 1.7e-124 449.9 290 77.2
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 1.7e-124 449.9 280 78.9
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 1.7e-124 449.9 287 77.0
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 2.2e-124 449.5 290 77.2
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 2.2e-124 449.5 290 77.2
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 2.8e-124 449.1 290 77.2
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 2.8e-124 449.1 290 76.9
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 2.8e-124 449.1 303 74.3
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 4.8e-124 448.4 276 79.0
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 4.8e-124 448.4 311 72.7
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 6.3e-124 448.0 281 78.6
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 8.3e-124 447.6 274 79.2
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 8.3e-124 447.6 278 78.1
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 8.3e-124 447.6 270 80.4
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 1.1e-123 447.2 290 76.6
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 1.1e-123 447.2 290 76.6
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 1.1e-123 447.2 303 74.9
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 1.4e-123 446.8 307 73.3
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 1.4e-123 446.8 338 67.8
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 2.4e-123 446.0 281 79.0
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 3.1e-123 445.7 278 77.7
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.1e-123 445.7 313 70.6
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 4.1e-123 445.3 276 77.5
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 1.2e-122 443.7 276 77.9
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 1.2e-122 443.7 275 78.9
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 1.6e-122 443.4 322 68.3
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 1.6e-122 443.4 295 75.3
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 2.7e-122 442.6 272 80.1
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.7e-122 442.6 307 73.0
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 2.7e-122 442.6 329 67.5
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 2.7e-122 442.6 313 71.2
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 3.5e-122 442.2 314 70.7
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 7.7e-122 441.0 304 74.7
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.0e-121 440.7 291 75.6
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 1.3e-121 440.3 328 69.8
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 2.3e-121 439.5 281 75.4
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 2.9e-121 439.1 275 77.1
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 3.8e-121 438.7 268 78.4
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 5.0e-121 438.3 287 76.3
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 8.6e-121 437.6 273 76.2
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 8.6e-121 437.6 308 71.1
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 1.5e-120 436.8 314 72.0
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.5e-120 436.0 338 66.6
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.2e-120 435.6 271 77.5
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 3.2e-120 435.6 286 75.5
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 3.2e-120 435.6 316 70.6
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 3.2e-120 435.6 291 74.2
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 3.2e-120 435.6 291 73.9
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 4.2e-120 435.3 332 69.0
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 4.2e-120 435.3 271 77.5
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 7.2e-120 434.5 272 77.2
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 7.2e-120 434.5 304 71.7
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 7.2e-120 434.5 338 66.0
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 1.2e-119 433.7 317 68.8
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 3.6e-119 432.2 274 77.0
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 6.1e-119 431.4 290 73.8
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 6.1e-119 431.4 339 66.1
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 4.0e-118 428.7 271 76.0
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 6.8e-118 427.9 285 74.0
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 2.6e-117 426.0 268 76.5
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 7.0e-115 417.9 307 68.7
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 9.5e-112 407.5 276 74.6
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 1.6e-111 406.8 378 59.0
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 1.4e-110 403.7 307 68.1
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 9.8e-109 397.5 265 74.0
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 8.3e-108 394.4 251 76.9
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 6.4e-100 368.2 302 64.9
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 1.2e-98 364.0 216 82.9
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.0e-97 360.9 260 71.2
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 1.2e-95 354.0 291 59.8
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 4.7e-95 352.1 240 70.8
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 7.5e-93 344.7 230 72.6
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 8.3e-92 341.3 226 72.6
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.2e-90 337.4 223 73.1
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 7.8e-90 334.7 262 59.9
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.1e-88 330.9 243 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.5e-88 330.5 204 75.5
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.8e-86 321.6 194 80.4
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 1.5e-85 320.5 208 76.9
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 1.5e-85 320.5 198 79.8
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.9e-83 313.5 202 76.7
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 3.2e-83 312.8 199 76.4
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 5.8e-77 292.0 266 53.4
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.1e-75 287.7 258 60.5
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 8.1e-71 271.6 210 66.2
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 1.9e-67 260.4 150 82.0
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 1.9e-56 223.8 210 56.2
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.9e-52 209.9 159 68.6
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 6.0e-50 202.2 288 42.4
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 2.3e-49 200.3 320 40.3
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 1.1e-48 198.0 170 60.0
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 1.1e-48 198.0 120 78.3
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 9.0e-46 188.3 116 79.3
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 2.9e-44 183.3 223 46.6
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 5.0e-44 182.6 127 71.7
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 7.2e-43 178.7 112 78.6
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 4.7e-34 149.4 320 35.9
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 1.0e-28 131.7 234 38.5
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 8.5e-28 128.6 77 76.6
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 1.0e-25 121.7 277 31.8
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 4.4e-24 116.3 76 75.0
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 5.7e-24 115.9 63 84.1
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.8e-22 110.9 334 25.4
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 1.6e-21 107.8 77 64.9
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 5.9e-21 105.9 131 49.6
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 9.4e-19 98.6 102 51.0
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 1.2e-13 81.6 77 54.5
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 1.2e-13 81.6 77 54.5
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 7.7e-13 79.0 137 40.1
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 6.8e-09 65.9 43 67.4
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 1.8e-06 57.8 45 62.2
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 7.0e-06 55.8 53 52.8
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 7.0e-06 55.8 60 55.0


User provided reference genes

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