Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 4.6e-183 644.4 326 100.0
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.1e-179 633.3 324 98.5
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 2.7e-127 459.1 299 77.3
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 6.1e-127 458.0 295 76.9
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 6.8e-126 454.5 307 74.6
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 6.8e-126 454.5 328 70.7
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.2e-125 453.8 292 77.4
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 1.5e-125 453.4 289 77.5
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 2.6e-125 452.6 310 73.9
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 3.4e-125 452.2 286 76.9
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 4.4e-125 451.8 316 72.2
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 5.7e-125 451.4 332 69.9
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 7.5e-125 451.1 277 79.8
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 7.5e-125 451.1 327 69.7
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 9.8e-125 450.7 290 77.6
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 9.8e-125 450.7 326 70.2
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 1.7e-124 449.9 329 71.4
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 2.2e-124 449.5 291 77.7
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 2.8e-124 449.1 289 77.9
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 3.7e-124 448.7 326 70.9
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 4.8e-124 448.4 280 79.3
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 4.8e-124 448.4 275 79.3
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.3e-124 448.0 275 78.5
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 8.3e-124 447.6 290 78.3
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 8.3e-124 447.6 322 70.8
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 1.4e-123 446.8 289 77.2
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 1.4e-123 446.8 280 78.6
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 1.8e-123 446.4 307 73.3
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 1.8e-123 446.4 335 68.4
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 2.4e-123 446.0 289 77.2
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 2.4e-123 446.0 304 74.0
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 2.4e-123 446.0 284 77.5
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 2.4e-123 446.0 303 73.9
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 3.1e-123 445.7 289 77.2
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 3.1e-123 445.7 289 77.2
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 3.1e-123 445.7 310 72.6
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 4.1e-123 445.3 289 77.2
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 4.1e-123 445.3 289 76.8
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.1e-123 445.3 310 71.3
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 5.4e-123 444.9 273 79.5
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 7.0e-123 444.5 273 79.1
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 7.0e-123 444.5 303 74.6
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 7.0e-123 444.5 277 78.0
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 7.0e-123 444.5 270 80.0
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 9.1e-123 444.1 280 78.6
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 1.6e-122 443.4 289 76.5
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 1.6e-122 443.4 289 76.5
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 3.5e-122 442.2 280 78.9
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 4.5e-122 441.8 277 77.6
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.5e-122 441.8 304 73.7
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 4.5e-122 441.8 311 71.4
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 5.9e-122 441.4 275 77.5
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 7.7e-122 441.0 294 75.5
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 1.0e-121 440.7 322 68.0
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 1.0e-121 440.7 328 69.8
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 1.7e-121 439.9 275 77.8
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 1.7e-121 439.9 274 78.8
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 1.7e-121 439.9 329 67.2
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 1.7e-121 439.9 313 70.9
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 2.3e-121 439.5 272 79.8
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 5.0e-121 438.3 274 77.4
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 6.5e-121 438.0 304 74.3
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.5e-120 436.8 290 75.5
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 3.2e-120 435.6 280 75.4
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 3.2e-120 435.6 268 78.0
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 4.2e-120 435.3 273 75.8
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.2e-120 435.3 335 67.2
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 5.5e-120 434.9 306 71.2
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 7.2e-120 434.5 286 76.2
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 9.5e-120 434.1 314 71.7
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.2e-119 433.7 335 66.6
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 2.1e-119 433.0 286 75.2
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 3.6e-119 432.2 332 68.7
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 4.7e-119 431.8 304 71.4
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 4.7e-119 431.8 271 76.8
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 4.7e-119 431.8 315 70.5
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 4.7e-119 431.8 290 74.1
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 4.7e-119 431.8 290 73.8
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 6.1e-119 431.4 272 76.8
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 6.1e-119 431.4 271 76.8
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.0e-118 430.6 336 66.7
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 1.4e-118 430.3 313 69.3
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 4.0e-118 428.7 271 76.0
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 6.8e-118 427.9 289 73.7
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 8.8e-118 427.6 273 76.6
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 7.5e-117 424.5 285 73.3
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 2.2e-116 422.9 268 76.1
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 4.5e-114 415.2 307 68.4
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 6.1e-111 404.8 276 74.3
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 1.0e-110 404.1 378 58.7
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 1.8e-110 403.3 304 68.8
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 2.9e-108 396.0 265 74.0
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 9.2e-107 391.0 251 76.1
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.6e-98 363.6 299 64.9
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 7.8e-98 361.3 216 82.4
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 8.6e-97 357.8 260 70.4
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 2.8e-95 352.8 291 59.8
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 4.0e-94 349.0 240 70.4
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 9.9e-93 344.4 227 73.6
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 7.1e-91 338.2 226 72.1
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 9.2e-91 337.8 223 73.1
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 1.3e-89 334.0 262 59.9
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 9.5e-88 327.8 204 75.5
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 9.5e-88 327.8 243 70.4
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.4e-85 319.3 194 79.9
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 7.6e-85 318.2 208 76.4
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 9.9e-85 317.8 198 79.3
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 9.2e-83 311.2 202 76.2
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 2.1e-82 310.1 199 75.9
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 7.6e-77 291.6 266 53.8
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.4e-75 285.4 258 60.1
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 6.9e-70 268.5 210 65.2
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 8.4e-68 261.5 152 81.6
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 4.8e-55 219.2 206 56.3
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 5.5e-51 205.7 159 66.7
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 1.3e-49 201.1 288 42.7
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 5.1e-49 199.1 320 40.6
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 5.7e-48 195.7 175 59.4
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 1.3e-47 194.5 116 80.2
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 3.4e-45 186.4 116 78.4
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 5.0e-44 182.6 223 47.1
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 2.5e-43 180.3 127 70.9
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 1.2e-42 177.9 109 80.7
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 6.1e-34 149.1 320 36.9
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 5.9e-29 132.5 234 38.9
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.9e-27 127.5 76 77.6
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 6.1e-26 122.5 277 31.8
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 5.7e-24 115.9 63 84.1
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.2e-23 114.0 334 26.0
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 6.3e-23 112.5 76 72.4
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 3.5e-21 106.7 73 68.5
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 5.9e-21 105.9 131 49.6
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.2e-18 98.2 102 51.0
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 2.0e-13 80.9 76 55.3
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 2.0e-13 80.9 76 55.3
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 1.0e-12 78.6 137 40.9
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 1.5e-08 64.7 42 69.0
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 1.8e-06 57.8 45 62.2
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 2.4e-06 57.4 60 56.7


User provided reference genes

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