Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 2.2e-115 420.2 511 100.0
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 7.7e-60 235.7 502 77.7
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.7e-59 234.6 502 79.5
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 3.8e-59 233.4 506 77.1
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 5.0e-59 233.0 506 66.0
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 8.6e-59 232.3 501 77.6
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 8.6e-59 232.3 506 78.7
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.9e-58 231.1 506 79.4
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 4.2e-58 229.9 502 77.3
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 4.2e-58 229.9 502 80.7
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 5.5e-58 229.6 504 72.2
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 1.6e-57 228.0 508 79.3
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 3.6e-57 226.9 506 77.9
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 3.6e-57 226.9 502 72.1
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 4.7e-57 226.5 506 77.3
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 4.7e-57 226.5 159 67.3
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 4.7e-57 226.5 503 75.7
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 1.0e-56 225.3 506 78.1
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.8e-56 224.6 510 75.1
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.8e-56 224.6 509 72.1
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 1.8e-56 224.6 502 76.7
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 5.2e-56 223.0 502 76.7
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 6.8e-56 222.6 502 76.7
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.5e-55 221.5 161 62.7
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 2.0e-55 221.1 504 75.2
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 2.6e-55 220.7 504 76.2
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 5.7e-55 219.5 502 79.5
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.3e-54 218.4 503 76.3
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 1.3e-54 218.4 512 75.2
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.7e-54 218.0 158 65.2
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 2.2e-54 217.6 503 75.3
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 2.2e-54 217.6 502 75.5
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 2.8e-54 217.2 504 75.8
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 2.8e-54 217.2 499 73.1
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 4.9e-54 216.5 502 76.1
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 8.3e-54 215.7 504 76.8
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 8.3e-54 215.7 504 74.8
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 3.1e-53 213.8 503 73.8
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 4.1e-53 213.4 502 74.5
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 5.4e-53 213.0 160 64.4
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 9.2e-53 212.2 505 75.6
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 1.2e-52 211.8 505 75.8
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 2.0e-52 211.1 504 75.4
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 3.5e-52 210.3 165 58.8
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 4.5e-52 209.9 504 77.4
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 4.5e-52 209.9 505 70.1
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 1.3e-51 208.4 159 62.9
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 1.7e-51 208.0 159 64.8
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 2.9e-51 207.2 502 75.1
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 3.8e-51 206.8 159 60.4
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 6.6e-51 206.1 166 60.2
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 6.6e-51 206.1 514 69.3
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.1e-50 205.3 157 62.4
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.5e-50 204.9 504 76.6
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 1.5e-50 204.9 159 63.5
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 1.9e-50 204.5 505 74.5
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 2.5e-50 204.1 163 61.3
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 2.5e-50 204.1 502 75.5
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 5.6e-50 203.0 502 74.3
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 7.3e-50 202.6 505 73.9
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 9.5e-50 202.2 504 73.6
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 2.8e-49 200.7 498 73.3
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.8e-49 200.7 505 73.3
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 4.7e-49 199.9 158 57.0
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 8.0e-49 199.1 502 77.5
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 8.0e-49 199.1 159 59.1
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.0e-48 198.7 504 74.0
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 1.4e-48 198.4 296 60.8
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 2.3e-48 197.6 505 76.2
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 2.3e-48 197.6 156 61.5
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 3.0e-48 197.2 504 73.8
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 5.2e-48 196.4 156 60.3
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 8.9e-48 195.7 158 55.1
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 2.0e-47 194.5 158 60.1
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.6e-47 194.1 158 60.8
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.3e-46 191.8 510 66.7
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 1.7e-46 191.4 158 54.4
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 2.2e-46 191.0 158 57.0
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 2.2e-46 191.0 510 66.5
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 2.2e-46 191.0 294 66.3
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 2.9e-46 190.7 158 55.1
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 2.9e-46 190.7 509 71.1
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 4.9e-46 189.9 514 70.8
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 6.4e-46 189.5 510 66.5
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 6.4e-46 189.5 159 57.2
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 6.4e-46 189.5 158 57.6
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 8.3e-46 189.1 510 66.3
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 4.1e-45 186.8 158 54.4
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 9.2e-45 185.7 506 66.4
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.2e-44 185.3 510 66.1
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 1.6e-44 184.9 503 70.8
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.6e-44 184.9 159 55.3
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 2.0e-44 184.5 158 56.3
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 4.6e-44 183.3 501 73.7
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 7.8e-44 182.6 157 57.3
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.5e-42 178.3 158 55.1
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 1.9e-42 177.9 142 61.3
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 1.2e-39 168.7 504 71.8
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 2.4e-37 161.0 156 50.6
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.2e-33 148.7 158 48.7
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 6.4e-30 136.3 159 44.7
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 3.1e-24 117.5 98 59.2
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 5.2e-24 116.7 161 36.6
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 2.3e-19 101.3 142 35.2
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 3.9e-19 100.5 154 35.1
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.6e-17 95.1 75 58.7
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.4e-13 82.0 62 67.7
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 9.3e-13 79.3 63 65.1
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 3.5e-12 77.4 83 53.0
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 7.8e-12 76.3 62 64.5
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 2.3e-11 74.7 72 58.3
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.5e-10 72.0 62 59.7
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.3e-09 68.9 133 27.8
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 1.8e-08 65.1 167 27.5
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 1.8e-08 65.1 167 27.5
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 1.5e-07 62.0 53 58.5
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 4.5e-07 60.5 143 30.1
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 7.6e-07 59.7 148 31.1
ATR0661G573 Amborella trichopoda HOM05D003056 ORTHO05D003422 3.8e-06 57.4 153 26.1
CBR_g32196 Chara braunii HOM05D000001 ORTHO05D000003 3.8e-06 57.4 96 34.4
COL.COLO4_29977 Corchorus olitorius HOM05D003056 ORTHO05D003422 4.9e-06 57.0 156 26.3
PSO063G7185 Papaver somniferum HOM05D003056 ORTHO05D003422 4.9e-06 57.0 148 29.7
Pp3c22_3230 Physcomitrium patens HOM05D003056 ORTHO05D003422 4.9e-06 57.0 113 31.9
AagrBONN_evm.TU.Sc2ySwM_228.3517 Anthoceros agrestis HOM05D003056 ORTHO05D003422 6.4e-06 56.6 102 31.4
Eucgr.K00330 Eucalyptus grandis HOM05D000001 ORTHO05D000003 8.4e-06 56.2 128 28.9
Prupe.8G139200 Prunus persica HOM05D003056 ORTHO05D003422 8.4e-06 56.2 130 27.7


User provided reference genes

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