Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.6e-138 496.1 251 100.0
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.4e-123 446.4 285 82.5
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 1.3e-95 353.6 222 77.9
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 4.8e-95 351.7 220 79.1
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 5.3e-94 348.2 211 81.0
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 5.3e-94 348.2 211 81.0
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 6.9e-94 347.8 218 77.5
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 6.9e-94 347.8 211 80.6
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 1.2e-93 347.1 223 76.7
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 1.5e-93 346.7 210 81.0
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 2.6e-93 345.9 219 77.2
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 3.4e-93 345.5 209 83.7
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 3.4e-93 345.5 209 83.7
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 5.8e-93 344.7 230 76.5
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 7.6e-93 344.4 236 75.4
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 7.6e-93 344.4 219 77.6
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 9.9e-93 344.0 207 81.6
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 1.3e-92 343.6 222 77.9
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 2.2e-92 342.8 209 81.8
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 2.2e-92 342.8 222 77.9
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 2.2e-92 342.8 209 82.8
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 3.8e-92 342.0 212 76.4
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 4.9e-92 341.7 220 77.3
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 4.9e-92 341.7 210 79.5
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 6.4e-92 341.3 213 78.9
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 8.4e-92 340.9 209 80.4
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 8.4e-92 340.9 212 78.8
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 8.4e-92 340.9 212 77.4
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 1.9e-91 339.7 209 80.9
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 2.4e-91 339.3 225 75.6
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 2.4e-91 339.3 209 78.9
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 3.2e-91 339.0 209 78.9
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 4.2e-91 338.6 220 76.8
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 4.2e-91 338.6 212 78.8
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 4.2e-91 338.6 228 75.4
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 5.4e-91 338.2 207 79.7
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 5.4e-91 338.2 209 80.4
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 7.1e-91 337.8 235 73.6
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 7.1e-91 337.8 217 77.0
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 9.3e-91 337.4 209 79.4
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 1.2e-90 337.0 217 78.8
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 1.2e-90 337.0 209 78.5
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 1.2e-90 337.0 237 72.2
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 1.2e-90 337.0 209 78.0
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 1.6e-90 336.7 228 74.6
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 1.6e-90 336.7 220 75.9
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 1.6e-90 336.7 213 77.5
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 2.1e-90 336.3 209 78.0
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 2.1e-90 336.3 209 78.0
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 2.1e-90 336.3 209 78.0
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 2.1e-90 336.3 209 78.0
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 2.1e-90 336.3 209 78.0
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 2.1e-90 336.3 209 78.0
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 2.1e-90 336.3 217 78.3
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 2.1e-90 336.3 235 73.6
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 2.7e-90 335.9 212 77.4
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 2.7e-90 335.9 214 78.0
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 3.5e-90 335.5 207 79.7
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 7.9e-90 334.3 209 77.5
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 1.3e-89 333.6 225 73.8
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 3.0e-89 332.4 210 79.5
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 3.9e-89 332.0 219 74.9
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 6.6e-89 331.3 217 77.0
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 6.6e-89 331.3 235 72.8
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 8.7e-89 330.9 207 78.3
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 8.7e-89 330.9 210 77.6
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 1.5e-88 330.1 209 77.5
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 3.3e-88 328.9 212 75.9
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 5.6e-88 328.2 218 76.6
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 7.3e-88 327.8 209 77.0
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 7.3e-88 327.8 207 76.3
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 1.3e-87 327.0 210 77.6
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 1.3e-87 327.0 236 72.9
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 3.6e-87 325.5 222 73.0
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 8.1e-87 324.3 245 68.2
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 4.0e-86 322.0 230 70.9
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 5.3e-86 321.6 255 67.1
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 5.3e-86 321.6 229 72.9
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 6.9e-86 321.2 216 73.1
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 9.9e-85 317.4 197 80.7
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 1.9e-83 313.2 234 68.4
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 3.0e-81 305.8 204 76.0
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 6.7e-81 304.7 216 68.1
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 5.6e-80 301.6 215 73.5
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.3e-79 300.4 207 71.5
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.6e-79 300.1 213 71.4
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 2.8e-79 299.3 210 72.4
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 1.8e-78 296.6 206 70.4
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 3.1e-78 295.8 209 68.9
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 2.0e-77 293.1 211 69.2
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 7.6e-77 291.2 206 68.9
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 3.8e-76 288.9 209 71.8
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 1.0e-73 280.8 169 84.0
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 5.1e-73 278.5 230 63.5
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 3.3e-72 275.8 199 67.3
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 5.7e-72 275.0 186 74.2
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 1.5e-69 266.9 215 66.0
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 4.5e-69 265.4 212 65.6
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.4e-67 260.4 220 65.0
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 7.2e-67 258.1 210 64.8
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 2.1e-66 256.5 222 61.7
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 2.8e-63 246.1 174 69.0
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 6.9e-62 241.5 187 65.2
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 4.5e-61 238.8 151 76.2
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 1.7e-60 236.9 207 62.3
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 2.1e-58 229.9 144 77.8
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 3.6e-58 229.2 157 72.6
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 2.2e-55 219.9 201 55.7
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 8.2e-55 218.0 167 67.7
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 2.0e-53 213.4 143 74.8
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 1.7e-52 210.3 154 68.8
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 5.0e-52 208.8 119 83.2
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 3.6e-50 202.6 212 54.2
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 1.2e-42 177.6 118 73.7
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 1.5e-40 170.6 113 73.5
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 4.8e-31 139.0 309 33.0
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 7.0e-30 135.2 158 46.2
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 2.0e-29 133.7 66 92.4
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 9.4e-27 124.8 86 70.9
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 4.4e-24 115.9 61 91.8
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 7.5e-24 115.2 59 93.2
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 3.1e-22 109.8 81 66.7
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 4.1e-22 109.4 79 72.2
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 2.0e-21 107.1 63 79.4
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.9e-20 103.2 56 87.5
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 5.0e-20 102.4 70 67.1
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 8.6e-20 101.7 187 33.2
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 6.1e-18 95.5 174 33.9
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 2.3e-17 93.6 60 78.3
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 9.2e-14 81.6 57 68.4
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 6.2e-10 68.9 43 79.1
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 6.2e-10 68.9 32 93.8
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 2.2e-07 60.5 55 56.4


User provided reference genes

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