Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 8.2e-307 1056.2 524 100.0
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.0e-301 1039.3 528 98.1
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 7.8e-249 863.6 530 79.1
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.3e-248 862.8 528 78.6
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.6e-246 854.7 529 77.1
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.8e-245 852.4 526 77.6
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 4.0e-245 851.3 530 77.9
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.2e-244 849.7 531 77.0
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 5.8e-244 847.4 526 77.4
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.8e-244 847.4 513 79.3
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 4.9e-243 844.3 535 77.0
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 6.4e-243 844.0 527 77.2
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.1e-242 843.2 533 75.4
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.4e-242 842.0 528 76.5
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 3.2e-242 841.6 528 76.5
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 3.2e-242 841.6 528 78.0
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 7.0e-242 840.5 528 76.9
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 2.0e-241 839.0 528 77.1
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 3.5e-241 838.2 528 75.8
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.5e-241 838.2 528 76.3
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.6e-241 837.8 528 76.5
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 6.0e-241 837.4 523 76.7
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 7.8e-241 837.0 528 77.3
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.0e-240 836.6 532 75.8
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 1.7e-240 835.9 525 76.0
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 2.3e-240 835.5 531 75.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 3.9e-240 834.7 526 76.4
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.9e-240 834.7 530 76.0
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 3.9e-240 834.7 528 76.7
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 8.6e-240 833.6 529 76.0
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 8.6e-240 833.6 529 76.0
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 8.6e-240 833.6 529 76.0
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 1.1e-239 833.2 565 72.4
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.1e-239 833.2 528 76.5
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.1e-239 833.2 528 76.5
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.5e-239 832.8 530 75.5
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.5e-239 832.8 528 75.4
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.5e-239 832.0 501 78.4
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 4.3e-239 831.2 528 75.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 5.6e-239 830.9 529 76.0
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 5.6e-239 830.9 530 76.0
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 5.6e-239 830.9 501 78.4
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 7.3e-239 830.5 530 76.2
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 7.3e-239 830.5 530 75.8
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.5e-239 830.1 530 75.7
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 1.2e-238 829.7 530 76.0
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 1.2e-238 829.7 530 75.1
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.2e-238 829.7 528 76.1
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.6e-238 829.3 526 74.7
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 2.1e-238 828.9 509 77.2
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.8e-238 828.6 528 75.9
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 2.8e-238 828.6 528 75.8
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 3.6e-238 828.2 501 78.0
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 4.7e-238 827.8 530 74.2
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 6.2e-238 827.4 529 75.8
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.1e-237 826.6 530 75.7
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.1e-237 826.6 501 77.8
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.1e-237 826.6 530 75.3
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.1e-237 826.6 529 77.3
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.8e-237 825.9 527 75.9
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.3e-237 825.5 530 74.9
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.3e-237 825.5 526 75.5
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.1e-237 825.1 530 75.5
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 3.1e-237 825.1 506 77.9
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 4.0e-237 824.7 526 74.9
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 6.8e-237 823.9 530 74.9
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.9e-237 823.5 529 74.5
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 8.9e-237 823.5 530 74.7
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 8.9e-237 823.5 527 74.8
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 1.5e-236 822.8 526 75.3
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 1.5e-236 822.8 501 77.6
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 3.4e-236 821.6 518 75.7
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 3.4e-236 821.6 561 72.5
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 4.4e-236 821.2 528 73.5
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 4.4e-236 821.2 528 75.2
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 4.4e-236 821.2 528 74.8
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 9.8e-236 820.1 528 73.9
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 9.8e-236 820.1 529 74.5
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.7e-235 819.3 526 74.7
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 3.7e-235 818.1 501 77.6
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 4.9e-235 817.8 528 73.5
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 6.4e-235 817.4 528 73.7
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.1e-234 816.6 526 74.7
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 2.4e-234 815.5 518 75.1
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 2.4e-234 815.5 501 76.6
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 2.4e-234 815.5 501 76.8
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 5.4e-234 814.3 528 74.8
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 9.2e-234 813.5 528 73.3
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 2.1e-233 812.4 528 72.9
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 2.1e-233 812.4 528 72.9
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 6.0e-233 810.8 553 71.2
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 7.8e-233 810.4 530 74.0
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 1.3e-232 809.7 528 72.9
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.7e-232 809.3 524 74.0
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 3.0e-232 808.5 501 76.2
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 6.6e-232 807.4 528 72.5
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 6.6e-232 807.4 528 72.5
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 8.6e-232 807.0 526 73.8
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 8.6e-232 807.0 528 74.1
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.5e-231 806.2 528 73.7
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 4.3e-231 804.7 526 73.6
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 5.6e-231 804.3 537 72.6
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 9.5e-231 803.5 528 72.3
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.2e-230 803.1 505 74.5
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 2.8e-230 802.0 526 72.6
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.7e-230 801.2 528 72.0
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 8.1e-230 800.4 539 72.0
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 8.9e-229 797.0 500 76.6
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.5e-223 779.6 529 71.1
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.5e-223 779.6 529 71.1
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.9e-219 765.4 520 70.8
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.5e-215 753.1 491 74.5
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 6.4e-211 737.6 523 67.7
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 6.4e-211 737.6 570 65.1
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.9e-210 736.1 527 67.7
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 2.7e-209 732.3 523 67.1
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.7e-209 732.3 527 67.0
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 4.0e-205 718.4 499 69.5
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.3e-200 702.6 473 73.6
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.6e-193 679.9 491 65.4
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 6.5e-187 657.9 528 63.1
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 7.2e-186 654.4 546 60.1
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 9.3e-186 654.1 529 62.9
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.1e-185 652.9 416 75.0
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 5.9e-180 634.8 397 76.8
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 9.4e-178 627.5 529 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 3.9e-176 622.1 501 62.1
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 3.2e-170 602.4 379 77.3
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 7.7e-156 554.7 346 77.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 2.2e-155 553.1 419 67.1
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 2.7e-153 546.2 344 77.0
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 5.5e-146 521.9 524 52.5
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 8.8e-144 514.6 491 51.5
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 5.7e-143 511.9 296 81.1
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 7.0e-141 505.0 298 79.2
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.6e-137 493.8 355 68.2
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.4e-128 464.2 510 49.6
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.8e-120 437.2 352 63.4
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 5.2e-120 435.6 502 46.8
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 8.9e-120 434.9 275 78.2
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 3.2e-109 399.8 285 69.5
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 1.1e-85 321.6 201 74.6
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 5.7e-74 282.7 401 38.9
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 2.7e-60 237.3 327 43.1
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 3.6e-60 236.9 409 38.9
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 3.0e-43 180.6 122 66.4
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.1e-28 131.3 95 62.1
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 6.1e-28 129.8 93 65.6
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 7.0e-24 116.3 79 68.4
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 2.9e-17 94.4 92 51.1
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 2.4e-16 91.3 85 56.5
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 4.7e-12 77.0 72 54.2
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 3.4e-10 70.9 151 37.1
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 1.9e-08 65.1 41 61.0
HPP92_023920 Vanilla planifolia HOM05D004668 ORTHO05D429806 2.7e-07 61.2 92 44.6
HPP92_023921 Vanilla planifolia HOM05D004668 ORTHO05D430822 6.6e-06 56.6 65 53.8


User provided reference genes

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