Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023802 Vanilla planifolia HOM05D002026 ORTHO05D430443 5.0e-75 284.3 135 100.0
DCAR_014917 Daucus carota HOM05D002026 ORTHO05D002291 7.4e-10 67.8 100 43.0
SMO367G0445 Selaginella moellendorffii HOM05D002026 ORTHO05D002291 9.6e-10 67.4 106 37.7
Gohir.A05G013000 Gossypium hirsutum HOM05D002026 ORTHO05D002291 1.3e-09 67.0 63 55.6
Sc08g0006050 Simmondsia chinensis HOM05D002026 ORTHO05D002291 1.3e-09 67.0 63 54.0
PGSC0003DMG400030687 Solanum tuberosum HOM05D002026 ORTHO05D002291 1.3e-09 67.0 63 57.1
Dinv36450 Davidia involucrata HOM05D002026 ORTHO05D002291 1.6e-09 66.6 36 77.8
Gohir.D05G014100 Gossypium hirsutum HOM05D002026 ORTHO05D002291 1.6e-09 66.6 63 55.6
Gorai.009G014100 Gossypium raimondii HOM05D002026 ORTHO05D002291 1.6e-09 66.6 63 55.6
EL10Ac8g18787 Beta vulgaris HOM05D002026 ORTHO05D002291 2.1e-09 66.2 39 76.9
Gohir.A06G052000 Gossypium hirsutum HOM05D002026 ORTHO05D002291 2.1e-09 66.2 63 54.0
Gohir.D06G050900 Gossypium hirsutum HOM05D002026 ORTHO05D002291 2.1e-09 66.2 63 54.0
Gorai.010G059000 Gossypium raimondii HOM05D002026 ORTHO05D002291 2.1e-09 66.2 63 54.0
Potri.018G121200 Populus trichocarpa HOM05D002026 ORTHO05D002291 2.1e-09 66.2 63 55.6
Sabra18G0099900 Salix brachista HOM05D002026 ORTHO05D002291 2.1e-09 66.2 63 55.6
Sabra18G0101700 Salix brachista HOM05D002026 ORTHO05D002291 2.1e-09 66.2 63 55.6
Solyc07g007430.3 Solanum lycopersicum HOM05D002026 ORTHO05D002291 2.1e-09 66.2 63 55.6
Sopen07g003480 Solanum pennellii HOM05D002026 ORTHO05D002291 2.1e-09 66.2 63 55.6
Nitab4.5_0002286g0080 Nicotiana tabacum HOM05D002026 ORTHO05D002291 2.8e-09 65.9 63 55.6
TWI34G1350 Tripterygium wilfordii HOM05D002026 ORTHO05D002291 2.8e-09 65.9 63 54.0
Medtr4g116160 Medicago truncatula HOM05D002026 ORTHO05D002291 3.7e-09 65.5 63 54.0
BcaB05g22851 Brassica carinata HOM05D002026 ORTHO05D002291 4.8e-09 65.1 77 46.8
BcaC03g13757 Brassica carinata HOM05D002026 ORTHO05D002291 4.8e-09 65.1 77 46.8
BcaC04g19427 Brassica carinata HOM05D002026 ORTHO05D002291 4.8e-09 65.1 63 52.4
A02p06200 Brassica napus HOM05D002026 ORTHO05D002291 4.8e-09 65.1 77 46.8
BNapus_Darmor_BZH_scaffold_38p01640 Brassica napus HOM05D002026 ORTHO05D002291 4.8e-09 65.1 77 46.8
BolC2t07037H Brassica oleracea HOM05D002026 ORTHO05D002291 4.8e-09 65.1 77 46.8
BolC9t58450H Brassica oleracea HOM05D002026 ORTHO05D002291 4.8e-09 65.1 63 52.4
BraA02t05569Z Brassica rapa HOM05D002026 ORTHO05D002291 4.8e-09 65.1 77 46.8
PGR102G0275 Punica granatum HOM05D002026 ORTHO05D002291 4.8e-09 65.1 34 82.4
PSO017G2992 Papaver somniferum HOM05D002026 ORTHO05D002291 6.2e-09 64.7 68 51.5
Hund09309 Selenicereus undatus HOM05D002026 ORTHO05D002291 6.2e-09 64.7 37 75.7
Actinidia38707 Actinidia chinensis HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Aa31LG4G13330 Aethionema arabicum HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
arahy.Tifrunner.gnm1.ann1.FNDT39 Arachis hypogaea HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
MSTRG.26328 Avicennia marina HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
MSTRG.6075 Avicennia marina HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
A03p10020 Brassica napus HOM05D002026 ORTHO05D002291 8.2e-09 64.3 63 50.8
C03p11570 Brassica napus HOM05D002026 ORTHO05D002291 8.2e-09 64.3 63 50.8
BolC3t13629H Brassica oleracea HOM05D002026 ORTHO05D002291 8.2e-09 64.3 63 50.8
BraA03t10312Z Brassica rapa HOM05D002026 ORTHO05D002291 8.2e-09 64.3 63 50.8
CSS0033823 Camellia sinensis var. sinensis HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
CSS0041508 Camellia sinensis var. sinensis HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
CANSAT11G1418 Cannabis sativa HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
CAN.G1281.3 Capsicum annuum HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Cpa.g.sc46.65 Carica papaya HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Cfa002264 Carpinus fangiana HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
CiPaw.03G252400 Carya illinoinensis HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
AUR62011227 Chenopodium quinoa HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
AUR62020007 Chenopodium quinoa HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Ca_21638_v3 Cicer arietinum L. HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
ClCG11G003500 Citrullus lanatus HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Ciclev10007734m.g Citrus clementina HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Cc06_g07670 Coffea canephora HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Haze_25446 Corylus avellana HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
MELO3C004483.2 Cucumis melo HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
CsaV3_2G003370 Cucumis sativus L. HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Dinv41446 Davidia involucrata HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
ECA240G2533 Erigeron canadensis HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 79.4
Migut.J01243 Erythranthe guttata HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Eucgr.C04398 Eucalyptus grandis HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
FvH4_1g02030 Fragaria vesca HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
FAN23G0648 Fragaria x ananassa HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
FAN26G0516 Fragaria x ananassa HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Glyma.13G163400 Glycine max HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Glyma.17G107500 Glycine max HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Gohir.A08G090200 Gossypium hirsutum HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Gohir.D08G101200 Gossypium hirsutum HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Gorai.004G109200 Gossypium raimondii HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
HanXRQChr09g0241841 Helianthus annuus HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 79.4
Lsat_1_v5_gn_7_45841 Lactuca sativa HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 79.4
Lj7C438G9 Lonicera japonica HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Lj4g0021525 Lotus japonicus HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Lalb_Chr07g0179371 Lupinus albus HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Lalb_Chr12g0198391 Lupinus albus HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Lalb_Chr13g0301341 Lupinus albus HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
MBI14_g24980_MAGBIO Magnolia biondii HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
MBI15_g22778_MAGBIO Magnolia biondii HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
MD15G1162500 Malus domestica HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Manes.06G044200 Manihot esculenta HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Nn2g12187 Nelumbo nucifera HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Nn8g39645 Nelumbo nucifera HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Nitab4.5_0009284g0010 Nicotiana tabacum HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Oeu028019.1 Olea europaea HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Oeu058582.1 Olea europaea HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Peaxi162Scf00088g00616 Petunia axillaris HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Phvul.003G172300 Phaseolus vulgaris HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Psat0s571g0040 Pisum sativum HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Potri.006G061800 Populus trichocarpa HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Prupe.7G252300 Prunus persica HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
QL02p090736 Quercus lobata HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
RcHm_v2.0_Chr2g0087091 Rosa chinensis HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Sabra06G0044500 Salix brachista HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Sed0011227 Sechium edule HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Hund21596 Selenicereus undatus HOM05D002026 ORTHO05D002291 8.2e-09 64.3 37 75.7
SGA_v2.0_scaffold132G34499 Striga asiatica HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
TPR.G7984 Trifolium pratense HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
VMungo1215G1266 Vigna mungo HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
GSVIVG01012856001 Vitis vinifera HOM05D002026 ORTHO05D002291 8.2e-09 64.3 34 82.4
Atru.chr7.2011 Acer truncatum HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 82.4
Actinidia26359 Actinidia chinensis HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
CDE05G3103 Ceratophyllum demersum HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 82.4
COL.COLO4_33368 Corchorus olitorius HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
DCAR_009343 Daucus carota HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
Duzib150G0754 Durio zibethinus HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
Duzib187G1734 Durio zibethinus HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
Manes.14G119200 Manihot esculenta HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
Rhsim03G0253100 Rhododendron simsii HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
SalBow1G0631 Salvia bowleyana HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
THA.LOC104799627 Tarenaya hassleriana HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
THA.LOC104811016 Tarenaya hassleriana HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
Thecc.09G137300 Theobroma cacao HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 1.1e-08 63.9 34 79.4
vmacro06117 Vaccinium macrocarpon HOM05D002026 ORTHO05D002291 1.1e-08 63.9 34 79.4
AL6G31910 Arabidopsis lyrata HOM05D002026 ORTHO05D002291 1.4e-08 63.5 34 76.5
AT5G20350 Arabidopsis thaliana HOM05D002026 ORTHO05D002291 1.4e-08 63.5 34 76.5
BcaB01g04791 Brassica carinata HOM05D002026 ORTHO05D002291 1.4e-08 63.5 63 50.8
A10p19600 Brassica napus HOM05D002026 ORTHO05D002291 1.4e-08 63.5 34 76.5
C09p55820 Brassica napus HOM05D002026 ORTHO05D002291 1.4e-08 63.5 34 76.5
BraA10t44035Z Brassica rapa HOM05D002026 ORTHO05D002291 1.4e-08 63.5 34 76.5
Carub.0006s1874 Capsella rubella HOM05D002026 ORTHO05D002291 1.4e-08 63.5 34 76.5
CARHR192490 Cardamine hirsuta HOM05D002026 ORTHO05D002291 1.4e-08 63.5 34 76.5
Thhalv10012979m.g Eutrema salsugineum HOM05D002026 ORTHO05D002291 1.4e-08 63.5 34 76.5
Pp3c12_14430 Physcomitrium patens HOM05D002026 ORTHO05D002291 1.4e-08 63.5 107 38.3
Sp6g24080 Schrenkiella parvula HOM05D002026 ORTHO05D002291 1.4e-08 63.5 34 76.5
Mapoly0011s0006 Marchantia polymorpha HOM05D002026 ORTHO05D002291 1.8e-08 63.2 72 44.4
PSO170G2750 Papaver somniferum HOM05D002026 ORTHO05D002291 1.8e-08 63.2 34 79.4
TAR170G0002 Trochodendron aralioides HOM05D002026 ORTHO05D002291 1.8e-08 63.2 34 79.4
TAR383G0696 Trochodendron aralioides HOM05D002026 ORTHO05D002291 1.8e-08 63.2 34 79.4
TAR677G0001 Trochodendron aralioides HOM05D002026 ORTHO05D002291 1.8e-08 63.2 34 79.4
Aqoxy7G02451 Aquilegia oxysepala HOM05D002026 ORTHO05D002291 2.4e-08 62.8 34 76.5
SEGI_20388 Sequoiadendron giganteum HOM05D002026 ORTHO05D002291 2.4e-08 62.8 34 76.5
Ah.09g224090 Amaranthus hybridus HOM05D002026 ORTHO05D002291 3.1e-08 62.4 33 81.8
MSTRG.16651 Avicennia marina HOM05D002026 ORTHO05D002291 3.1e-08 62.4 53 50.9
BcaB08g36495 Brassica carinata HOM05D002026 ORTHO05D002291 3.1e-08 62.4 34 73.5
ECA236G2038 Erigeron canadensis HOM05D002026 ORTHO05D002291 3.1e-08 62.4 34 76.5
Gohir.D13G207600 Gossypium hirsutum HOM05D002026 ORTHO05D002291 3.1e-08 62.4 34 73.5
Gorai.013G236500 Gossypium raimondii HOM05D002026 ORTHO05D002291 3.1e-08 62.4 34 73.5
HanXRQChr05g0143461 Helianthus annuus HOM05D002026 ORTHO05D002291 3.1e-08 62.4 34 76.5
Lj9C704G6 Lonicera japonica HOM05D002026 ORTHO05D002291 3.1e-08 62.4 33 81.8
MD02G1018500 Malus domestica HOM05D002026 ORTHO05D002291 3.1e-08 62.4 34 79.4
Os02g0184000 Oryza sativa ssp. japonica HOM05D002026 ORTHO05D002291 3.1e-08 62.4 37 70.3
Os06g0644500 Oryza sativa ssp. japonica HOM05D002026 ORTHO05D002291 3.1e-08 62.4 37 70.3
SHI04910 Sapria himalayana HOM05D002026 ORTHO05D002291 3.1e-08 62.4 37 64.9
Zm00001eb275220 Zea mays HOM05D002026 ORTHO05D002291 3.1e-08 62.4 37 70.3
Zm00001eb386990 Zea mays HOM05D002026 ORTHO05D002291 3.1e-08 62.4 37 70.3
Lsat_1_v5_gn_8_62900 Lactuca sativa HOM05D002026 ORTHO05D002291 4.0e-08 62.0 34 76.5
arahy.Tifrunner.gnm1.ann1.P4FGTG Arachis hypogaea HOM05D002026 ORTHO05D002291 5.3e-08 61.6 34 79.4
Sed0015884 Sechium edule HOM05D002026 ORTHO05D002291 5.3e-08 61.6 34 79.4
SEGI_22278 Sequoiadendron giganteum HOM05D002026 ORTHO05D002291 5.3e-08 61.6 34 67.6
HPP92_003861 Vanilla planifolia HOM05D002026 ORTHO05D002291 5.3e-08 61.6 34 76.5
Peaxi162Scf00299g00344 Petunia axillaris HOM05D002026 ORTHO05D002291 6.9e-08 61.2 34 70.6
ATR0767G100 Amborella trichopoda HOM05D002026 ORTHO05D002291 9.0e-08 60.8 34 67.6
Aqoxy5G01885 Aquilegia oxysepala HOM05D002026 ORTHO05D002291 9.0e-08 60.8 34 67.6
Pp3c4_7570 Physcomitrium patens HOM05D002026 ORTHO05D002291 9.0e-08 60.8 34 70.6
PGR142G2732 Punica granatum HOM05D002026 ORTHO05D002291 9.0e-08 60.8 34 67.6
FAN20G1881 Fragaria x ananassa HOM05D002026 ORTHO05D002291 1.2e-07 60.5 48 54.2
FAN24G1859 Fragaria x ananassa HOM05D002026 ORTHO05D002291 1.2e-07 60.5 48 54.2
TWI59G0597 Tripterygium wilfordii HOM05D002026 ORTHO05D002291 1.2e-07 60.5 34 67.6
Migut.B00507 Erythranthe guttata HOM05D002026 ORTHO05D002291 1.5e-07 60.1 34 64.7
FvH4_2g10900 Fragaria vesca HOM05D002026 ORTHO05D002291 1.5e-07 60.1 34 64.7
FAN15G0203 Fragaria x ananassa HOM05D002026 ORTHO05D002291 1.5e-07 60.1 34 64.7
SalBow6G4178 Salvia bowleyana HOM05D002026 ORTHO05D002291 2.0e-07 59.7 34 64.7
SGA_v2.0_scaffold32G12961 Striga asiatica HOM05D002026 ORTHO05D002291 2.0e-07 59.7 34 64.7
Eucgr.C00485 Eucalyptus grandis HOM05D002026 ORTHO05D002291 3.4e-07 58.9 34 79.4
Medtr1g112830 Medicago truncatula HOM05D002026 ORTHO05D002291 3.4e-07 58.9 34 79.4
unitig_61.g26043 Utricularia gibba HOM05D002026 ORTHO05D002291 3.4e-07 58.9 34 61.8
ATR0767G066 Amborella trichopoda HOM05D002026 ORTHO05D002291 5.8e-07 58.2 34 73.5
vmacro06119 Vaccinium macrocarpon HOM05D002026 ORTHO05D002291 5.8e-07 58.2 34 73.5
vmacro22982 Vaccinium macrocarpon HOM05D002026 ORTHO05D002291 5.8e-07 58.2 34 73.5
Gohir.A13G201800 Gossypium hirsutum HOM05D002026 ORTHO05D002291 1.0e-06 57.4 34 70.6


User provided reference genes

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