Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 0.0e+00 1791.2 864 100.0
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1208.0 857 67.0
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1190.6 858 65.7
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1184.1 892 63.5
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1172.5 859 65.2
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1154.4 864 63.4
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1142.5 857 62.7
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1141.7 860 62.1
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1140.9 860 63.4
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1136.7 856 62.7
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1134.8 864 61.8
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1131.7 858 63.5
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 0.0e+00 1130.9 871 62.2
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1129.0 860 62.8
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1128.6 858 63.4
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1121.7 860 62.4
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 0.0e+00 1120.5 822 63.6
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1120.1 849 63.3
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1118.2 855 62.1
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1117.8 858 61.8
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1115.1 857 62.4
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1114.8 859 62.2
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1112.4 857 62.1
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1106.7 857 62.0
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1104.0 853 61.4
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1103.2 856 60.2
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1101.7 856 61.0
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1101.3 860 61.0
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1101.3 828 63.4
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1094.3 858 61.5
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1092.8 885 59.9
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1091.6 858 61.4
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1089.3 859 61.0
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1082.4 819 63.7
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1079.3 765 65.1
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1078.2 861 59.2
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1076.6 853 60.3
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 5.9e-312 1073.5 856 59.9
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 3.0e-311 1071.6 878 59.5
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 4.1e-311 1071.2 861 59.2
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 5.3e-311 1070.8 859 59.7
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.5e-310 1069.3 816 63.4
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 1.5e-310 1069.3 798 63.4
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 1.5e-310 1069.3 860 60.1
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 1.5e-310 1069.3 856 60.2
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 3.4e-310 1068.1 856 60.3
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 7.6e-310 1067.0 856 60.4
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 1.3e-309 1066.2 858 60.5
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.7e-309 1065.8 869 59.4
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 8.4e-309 1063.5 858 59.2
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 8.4e-309 1063.5 807 61.7
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 8.4e-309 1063.5 860 59.0
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 1.9e-308 1062.4 860 59.9
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 1.9e-308 1062.4 856 59.1
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 2.5e-308 1062.0 859 59.3
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 5.5e-308 1060.8 860 59.3
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 7.1e-308 1060.4 856 59.6
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 2.7e-307 1058.5 856 59.6
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 2.3e-306 1055.4 866 58.2
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 3.0e-306 1055.0 860 59.8
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 6.7e-306 1053.9 864 58.6
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 8.7e-306 1053.5 858 58.9
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 1.1e-305 1053.1 856 58.8
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 4.3e-305 1051.2 867 59.7
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 1.3e-304 1049.7 856 59.3
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 1.6e-304 1049.3 860 58.4
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 2.1e-304 1048.9 879 57.1
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 1.8e-303 1045.8 860 59.5
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 4.1e-303 1044.6 879 58.0
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 4.1e-303 1044.6 778 62.0
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 5.3e-303 1044.3 805 61.6
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 6.9e-303 1043.9 975 53.4
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 1.2e-302 1043.1 858 59.8
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.6e-302 1042.0 860 58.0
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 1.3e-301 1039.6 859 58.8
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.2e-301 1038.9 878 58.1
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 2.2e-301 1038.9 854 58.9
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 5.0e-301 1037.7 863 58.7
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 8.4e-301 1036.9 848 59.4
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 3.2e-300 1035.0 858 57.5
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 1.2e-299 1033.1 863 57.6
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 5.1e-298 1027.7 893 55.9
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 1.5e-297 1026.2 863 57.2
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 3.3e-297 1025.0 864 57.3
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 7.4e-297 1023.8 861 58.8
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 3.7e-296 1021.5 863 57.0
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 8.2e-296 1020.4 855 58.4
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 2.4e-295 1018.8 767 63.5
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 3.4e-294 1015.0 861 57.4
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.0e-293 1013.4 899 55.1
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 1.9e-292 1009.2 859 56.7
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 9.4e-292 1006.9 790 60.0
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 1.0e-290 1003.4 862 57.9
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 2.6e-289 998.8 838 56.9
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 2.0e-286 989.2 855 55.7
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 2.2e-285 985.7 755 60.9
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 6.1e-283 977.6 771 59.5
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 2.0e-281 972.6 770 59.1
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 2.6e-281 972.2 726 62.3
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 4.5e-278 961.4 769 58.6
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 5.9e-278 961.1 770 58.7
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 7.7e-278 960.7 771 58.2
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.7e-277 959.5 717 62.1
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 2.5e-276 955.7 805 56.9
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 9.4e-276 953.7 775 58.3
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.4e-274 949.9 774 58.3
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 2.0e-273 946.0 868 54.6
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 2.8e-272 942.2 805 56.4
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 6.3e-272 941.0 920 52.7
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-269 933.3 777 57.5
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.8e-266 922.9 889 53.1
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 6.8e-266 921.0 771 58.6
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 8.8e-266 920.6 807 55.1
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 8.8e-266 920.6 852 54.1
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 6.1e-259 897.9 723 58.2
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 5.9e-254 881.3 732 56.6
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 9.2e-247 857.4 862 49.3
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 2.7e-246 855.9 867 51.2
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 9.8e-241 837.4 794 51.0
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 3.0e-237 825.9 658 60.5
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.1e-236 823.9 805 49.9
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 5.2e-234 815.1 770 51.4
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.6e-222 776.9 797 48.9
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.6e-222 776.9 789 49.4
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.3e-208 730.7 607 59.1
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 9.9e-201 704.5 473 67.4
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 3.2e-199 699.5 790 46.1
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.3e-197 693.3 626 54.2
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 2.8e-195 686.4 695 47.8
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.1e-186 656.4 437 67.7
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 6.9e-186 655.2 622 53.5
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.1e-178 629.4 433 66.5
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 5.5e-167 592.4 670 48.2
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 2.1e-166 590.5 429 64.3
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.8e-165 587.4 581 52.2
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.8e-163 580.1 865 37.5
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.0e-157 559.7 527 52.4
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 2.2e-155 553.9 472 56.4
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 8.6e-144 515.4 569 49.6
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 2.4e-122 444.1 323 64.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 6.6e-112 409.5 270 70.0
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 3.8e-107 393.7 412 48.5
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 6.0e-105 386.3 795 32.7
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 7.8e-105 386.0 327 55.7
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 2.2e-99 367.9 440 45.9
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 4.2e-90 337.0 399 45.4
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 9.9e-84 315.8 245 61.6
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 7.1e-82 309.7 527 35.1
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 2.1e-81 308.1 408 42.4
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 6.0e-81 306.6 413 42.1
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.8e-72 278.5 842 29.2
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 1.5e-68 265.4 203 62.6
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 2.1e-57 228.4 213 54.0
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 1.8e-48 198.7 141 62.4
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 3.7e-46 191.0 99 82.8
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.1e-45 189.5 163 52.8
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.6e-41 175.6 112 67.9
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 5.3e-37 160.6 194 44.8
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 3.6e-33 147.9 199 41.7
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 3.7e-30 137.9 110 53.6
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 2.3e-24 118.6 86 62.8
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 5.9e-20 104.0 69 68.1
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.0e-16 93.2 61 67.2
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 1.8e-16 92.4 81 56.8
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 2.6e-15 88.6 96 49.0
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 4.4e-15 87.8 84 50.0
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.4e-13 82.8 130 38.5
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 3.2e-13 81.6 42 78.6
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 7.0e-13 80.5 41 80.5
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.0e-11 76.6 51 68.6
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.0e-11 76.6 63 57.1
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.6e-09 69.3 40 67.5
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 8.0e-09 67.0 59 54.2
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.5e-07 62.8 56 50.0
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.0e-07 62.4 55 50.9
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 3.4e-07 61.6 66 51.5


User provided reference genes

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