Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023090 Vanilla planifolia HOM05D006285 ORTHO05D007249 4.3e-86 321.2 156 100.0
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 1.1e-17 94.0 183 36.1
Manes.09G186200 Manihot esculenta HOM05D006285 ORTHO05D007249 7.2e-17 91.3 189 36.5
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 7.2e-17 91.3 203 33.5
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 1.6e-16 90.1 194 35.6
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 3.6e-16 89.0 183 35.5
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 8.0e-16 87.8 144 37.5
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 1.0e-15 87.4 198 34.8
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 2.3e-15 86.3 195 35.4
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 2.3e-15 86.3 184 33.2
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 2.3e-15 86.3 197 34.0
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 3.0e-15 85.9 185 34.1
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 3.0e-15 85.9 197 34.0
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 3.0e-15 85.9 197 34.0
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 3.9e-15 85.5 193 34.7
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 3.9e-15 85.5 193 34.7
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 6.7e-15 84.7 206 33.0
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 4.4e-14 82.0 174 32.8
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 4.4e-14 82.0 195 33.8
CDE06G1494 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 7.4e-14 81.3 143 37.1
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 9.7e-14 80.9 145 37.2
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 1.3e-13 80.5 197 34.0
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 1.3e-13 80.5 174 33.3
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 1.7e-13 80.1 182 37.4
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 2.2e-13 79.7 191 33.5
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 2.2e-13 79.7 191 33.5
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 2.8e-13 79.3 196 30.6
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 3.7e-13 79.0 202 29.7
MELO3C022348.2 Cucumis melo HOM05D006285 ORTHO05D007249 3.7e-13 79.0 181 34.3
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 4.8e-13 78.6 194 33.0
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 4.8e-13 78.6 203 31.5
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 6.3e-13 78.2 195 31.3
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 8.2e-13 77.8 164 32.9
Rhsim12G0098900 Rhododendron simsii HOM05D006285 ORTHO05D007249 8.2e-13 77.8 177 35.0
EL10Ac6g13588 Beta vulgaris HOM05D006285 ORTHO05D007249 1.1e-12 77.4 186 31.7
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 1.1e-12 77.4 143 37.8
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 1.4e-12 77.0 198 31.8
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 1.8e-12 76.6 143 36.4
Sabra03G0120200 Salix brachista HOM05D006285 ORTHO05D007249 1.8e-12 76.6 218 29.8
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 2.4e-12 76.3 152 34.2
Duzib052G0121 Durio zibethinus HOM05D006285 ORTHO05D007249 3.1e-12 75.9 105 41.9
Potri.001G062500 Populus trichocarpa HOM05D006285 ORTHO05D007249 3.1e-12 75.9 148 36.5
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 4.1e-12 75.5 165 35.8
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 4.1e-12 75.5 193 31.6
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 4.1e-12 75.5 195 31.3
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 7.0e-12 74.7 193 31.6
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 7.0e-12 74.7 150 38.0
Actinidia22128 Actinidia chinensis HOM05D006285 ORTHO05D007249 1.2e-11 73.9 168 31.0
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 1.2e-11 73.9 198 32.3
Thhalv10014724m.g Eutrema salsugineum HOM05D006285 ORTHO05D007249 2.0e-11 73.2 186 33.3
HanXRQChr06g0175041 Helianthus annuus HOM05D006285 ORTHO05D007249 2.0e-11 73.2 161 32.3
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 2.6e-11 72.8 194 29.9
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 2.6e-11 72.8 194 29.9
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 3.5e-11 72.4 201 30.8
Ciclev10032858m.g Citrus clementina HOM05D006285 ORTHO05D007249 3.5e-11 72.4 182 33.0
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 4.5e-11 72.0 165 31.5
MD16G1127400 Malus domestica HOM05D006285 ORTHO05D007249 5.9e-11 71.6 209 31.1
Duzib248G1203 Durio zibethinus HOM05D006285 ORTHO05D007249 7.7e-11 71.2 190 32.6
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 1.3e-10 70.5 169 30.8
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 1.7e-10 70.1 151 34.4
Sabra01G0044900 Salix brachista HOM05D006285 ORTHO05D007249 1.7e-10 70.1 144 34.0
A03p05870 Brassica napus HOM05D006285 ORTHO05D007249 2.2e-10 69.7 191 29.3
BraA03t09926Z Brassica rapa HOM05D006285 ORTHO05D007249 2.2e-10 69.7 191 29.3
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 2.2e-10 69.7 173 31.2
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 3.8e-10 68.9 147 32.0
Os04g0395800 Oryza sativa ssp. japonica HOM05D006285 ORTHO05D007249 3.8e-10 68.9 75 52.0
HanXRQChr17g0540471 Helianthus annuus HOM05D006285 ORTHO05D007249 6.5e-10 68.2 173 30.1
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 6.5e-10 68.2 181 32.6
Atru.chr11.2411 Acer truncatum HOM05D006285 ORTHO05D007249 8.5e-10 67.8 70 52.9
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 8.5e-10 67.8 188 31.4
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 1.1e-09 67.4 191 28.8
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 1.1e-09 67.4 191 28.8
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 1.1e-09 67.4 210 29.5
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 1.5e-09 67.0 91 44.0
Rhsim12G0019500 Rhododendron simsii HOM05D006285 ORTHO05D007249 1.9e-09 66.6 70 48.6
BcaNung01870 Brassica carinata HOM05D006285 ORTHO05D007249 2.5e-09 66.2 186 30.6
BcaNung01871 Brassica carinata HOM05D006285 ORTHO05D007249 2.5e-09 66.2 186 30.6
A02p01780 Brassica napus HOM05D006285 ORTHO05D007249 2.5e-09 66.2 186 31.2
THA.LOC104803190 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 2.5e-09 66.2 199 31.2
COL.COLO4_20246 Corchorus olitorius HOM05D006285 ORTHO05D007249 3.2e-09 65.9 187 29.9
Eucgr.B03545 Eucalyptus grandis HOM05D006285 ORTHO05D007249 3.2e-09 65.9 109 39.4
PGSC0003DMG400006480 Solanum tuberosum HOM05D006285 ORTHO05D007249 3.2e-09 65.9 160 31.2
BraA02t05154Z Brassica rapa HOM05D006285 ORTHO05D007249 4.2e-09 65.5 186 31.2
PSO478G0022 Papaver somniferum HOM05D006285 ORTHO05D007249 5.5e-09 65.1 174 30.5
CAN.G1179.3 Capsicum annuum HOM05D006285 ORTHO05D000105 7.2e-09 64.7 102 38.2
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 1.2e-08 63.9 92 43.5
Nn3g16318 Nelumbo nucifera HOM05D006285 ORTHO05D007249 1.2e-08 63.9 125 36.8
Aa31LG3G14440 Aethionema arabicum HOM05D006285 ORTHO05D007249 2.7e-08 62.8 180 29.4
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 2.7e-08 62.8 91 41.8
SEGI_20867 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 2.7e-08 62.8 172 30.2
Lsat_1_v5_gn_3_31461 Lactuca sativa HOM05D006285 ORTHO05D007249 3.6e-08 62.4 169 31.4
BcaNung01167 Brassica carinata HOM05D006285 ORTHO05D007249 6.1e-08 61.6 185 30.8
PSO017G1512 Papaver somniferum HOM05D006285 ORTHO05D007249 6.1e-08 61.6 176 30.7
Zm00001eb084980 Zea mays HOM05D006285 ORTHO05D007249 8.0e-08 61.2 79 48.1
ECA236G0223 Erigeron canadensis HOM05D001047 ORTHO05D000768 1.4e-07 60.5 77 48.1
Aqoxy3G01789 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 1.8e-07 60.1 76 46.1
CsaV3_4G002460 Cucumis sativus L. HOM05D006285 ORTHO05D007249 1.8e-07 60.1 197 28.9
ECA246G0706 Erigeron canadensis HOM05D006285 ORTHO05D007249 1.8e-07 60.1 101 36.6
FvH4_4g23000 Fragaria vesca HOM05D006285 ORTHO05D007249 1.8e-07 60.1 85 42.4
RcHm_v2.0_Chr4g0429271 Rosa chinensis HOM05D006285 ORTHO05D007249 2.3e-07 59.7 85 41.2
Manes.08G102800 Manihot esculenta HOM05D006285 ORTHO05D007249 4.0e-07 58.9 141 30.5
Cpa.g.sc207.10 Carica papaya HOM05D006285 ORTHO05D007249 6.7e-07 58.2 146 32.2
HanXRQChr04g0125901 Helianthus annuus HOM05D001047 ORTHO05D000768 1.5e-06 57.0 78 43.6
Zm00001eb005990 Zea mays HOM05D001047 ORTHO05D000768 1.5e-06 57.0 74 44.6
Os03g0181100 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 3.3e-06 55.8 75 42.7
Sopen01g005260 Solanum pennellii HOM05D015436 ORTHO05D018126 3.3e-06 55.8 72 41.7
MELO3C017797.2 Cucumis melo HOM05D006285 ORTHO05D007249 4.4e-06 55.5 161 29.8
Sc04g0010480 Simmondsia chinensis HOM05D006285 ORTHO05D007249 5.7e-06 55.1 153 30.1
Dinv19403 Davidia involucrata HOM05D000943 ORTHO05D010024 7.5e-06 54.7 116 32.8
HanXRQChr08g0210081 Helianthus annuus HOM05D006285 ORTHO05D007249 7.5e-06 54.7 85 38.8


User provided reference genes

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