Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_023068 Vanilla planifolia HOM05D002338 ORTHO05D006706 6.5e-96 354.0 171 100.0
Nn2g14191 Nelumbo nucifera HOM05D002338 ORTHO05D006706 3.6e-70 268.5 144 89.6
CiPaw.14G099400 Carya illinoinensis HOM05D002338 ORTHO05D006706 2.3e-69 265.8 172 76.7
PSO801G0423 Papaver somniferum HOM05D002338 ORTHO05D006706 2.3e-69 265.8 144 86.8
GSVIVG01036111001 Vitis vinifera HOM05D002338 ORTHO05D006706 2.3e-69 265.8 144 85.4
AUR62009748 Chenopodium quinoa HOM05D002338 ORTHO05D006706 3.1e-69 265.4 144 88.2
Eucgr.J00500 Eucalyptus grandis HOM05D002338 ORTHO05D006706 3.1e-69 265.4 144 86.1
TAR633G2567 Trochodendron aralioides HOM05D002338 ORTHO05D006706 4.0e-69 265.0 144 87.5
ATR0820G136 Amborella trichopoda HOM05D002338 ORTHO05D006706 6.8e-69 264.2 142 87.3
CiPaw.13G135000 Carya illinoinensis HOM05D002338 ORTHO05D006706 6.8e-69 264.2 144 86.8
Rhsim01G0204800 Rhododendron simsii HOM05D002338 ORTHO05D006706 6.8e-69 264.2 144 87.5
Ah.08g215660 Amaranthus hybridus HOM05D002338 ORTHO05D006706 8.9e-69 263.8 144 88.9
CSS0021330 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 8.9e-69 263.8 144 88.9
CSS0045463 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 8.9e-69 263.8 144 88.9
CDE08G1107 Ceratophyllum demersum HOM05D002338 ORTHO05D006706 8.9e-69 263.8 169 75.7
AUR62036197 Chenopodium quinoa HOM05D002338 ORTHO05D006706 1.5e-68 263.1 144 87.5
Nitab4.5_0006738g0010 Nicotiana tabacum HOM05D002338 ORTHO05D006706 1.5e-68 263.1 143 86.7
Aqoxy2G01110 Aquilegia oxysepala HOM05D002338 ORTHO05D006706 2.0e-68 262.7 144 84.7
CANSAT54G2275 Cannabis sativa HOM05D002338 ORTHO05D006706 2.6e-68 262.3 143 86.0
Lalb_Chr24g0393531 Lupinus albus HOM05D002338 ORTHO05D006706 2.6e-68 262.3 144 86.1
Atru.chr3.3215 Acer truncatum HOM05D002338 ORTHO05D006706 3.4e-68 261.9 138 89.1
Nitab4.5_0000755g0010 Nicotiana tabacum HOM05D002338 ORTHO05D006706 3.4e-68 261.9 143 86.7
vmacro14352 Vaccinium macrocarpon HOM05D002338 ORTHO05D006706 3.4e-68 261.9 144 86.8
Cc01_g08990 Coffea canephora HOM05D002338 ORTHO05D006706 4.4e-68 261.5 143 86.0
Manes.04G002800 Manihot esculenta HOM05D002338 ORTHO05D006706 4.4e-68 261.5 140 87.9
EL10Ac7g15831 Beta vulgaris HOM05D002338 ORTHO05D006706 5.8e-68 261.2 138 88.4
HanXRQChr01g0024511 Helianthus annuus HOM05D002338 ORTHO05D006706 5.8e-68 261.2 144 86.8
Hund18762 Selenicereus undatus HOM05D002338 ORTHO05D006706 5.8e-68 261.2 144 87.5
Lsat_1_v5_gn_1_59241 Lactuca sativa HOM05D002338 ORTHO05D006706 7.5e-68 260.8 144 84.0
PGR119G2253 Punica granatum HOM05D002338 ORTHO05D006706 9.8e-68 260.4 144 86.1
Psat5g258120 Pisum sativum HOM05D002338 ORTHO05D006706 1.7e-67 259.6 140 86.4
Thecc.09G281400 Theobroma cacao HOM05D002338 ORTHO05D006706 1.7e-67 259.6 143 86.0
RcHm_v2.0_Chr5g0045651 Rosa chinensis HOM05D002338 ORTHO05D006706 2.2e-67 259.2 143 84.6
Sp4g10240 Schrenkiella parvula HOM05D002338 ORTHO05D006706 2.2e-67 259.2 145 85.5
CAN.G1524.8 Capsicum annuum HOM05D002338 ORTHO05D006706 3.7e-67 258.5 143 85.3
PGSC0003DMG400026336 Solanum tuberosum HOM05D002338 ORTHO05D006706 3.7e-67 258.5 143 85.3
PSO339G0254 Papaver somniferum HOM05D002338 ORTHO05D006706 4.9e-67 258.1 144 84.7
C04p56750 Brassica napus HOM05D002338 ORTHO05D006706 6.4e-67 257.7 143 86.0
Dinv22835 Davidia involucrata HOM05D002338 ORTHO05D006706 6.4e-67 257.7 142 85.9
Thhalv10017003m.g Eutrema salsugineum HOM05D002338 ORTHO05D006706 6.4e-67 257.7 145 85.5
FAN21G3331 Fragaria x ananassa HOM05D002338 ORTHO05D006706 6.4e-67 257.7 143 83.9
Glyma.08G074700 Glycine max HOM05D000446 ORTHO05D006706 6.4e-67 257.7 144 84.7
Phvul.005G123100 Phaseolus vulgaris HOM05D002338 ORTHO05D006706 6.4e-67 257.7 144 83.3
TWI79G1300 Tripterygium wilfordii HOM05D002338 ORTHO05D006706 6.4e-67 257.7 143 84.6
Carub.0004s0807 Capsella rubella HOM05D002338 ORTHO05D006706 1.1e-66 256.9 145 84.8
Cfa010006 Carpinus fangiana HOM05D002338 ORTHO05D006706 1.1e-66 256.9 144 84.7
Ca_01654_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006706 1.1e-66 256.9 140 85.0
AL4G21410 Arabidopsis lyrata HOM05D002338 ORTHO05D006706 1.4e-66 256.5 145 84.8
CARHR120040 Cardamine hirsuta HOM05D002338 ORTHO05D006706 1.4e-66 256.5 145 85.5
Gohir.A09G096100 Gossypium hirsutum HOM05D002338 ORTHO05D006706 1.4e-66 256.5 143 84.6
MD03G1147500 Malus domestica HOM05D002338 ORTHO05D006706 1.4e-66 256.5 143 84.6
Medtr2g086600 Medicago truncatula HOM05D002338 ORTHO05D006706 1.4e-66 256.5 140 84.3
ECA248G0812 Erigeron canadensis HOM05D002338 ORTHO05D006706 1.9e-66 256.1 144 81.2
Migut.N02484 Erythranthe guttata HOM05D002338 ORTHO05D006706 1.9e-66 256.1 144 84.0
Gohir.D09G095800 Gossypium hirsutum HOM05D002338 ORTHO05D006706 1.9e-66 256.1 143 84.6
Lj3g0018005 Lotus japonicus HOM05D002338 ORTHO05D006706 1.9e-66 256.1 140 83.6
Solyc11g068540.2 Solanum lycopersicum HOM05D002338 ORTHO05D006706 1.9e-66 256.1 143 84.6
Sopen11g027260 Solanum pennellii HOM05D002338 ORTHO05D006706 1.9e-66 256.1 143 84.6
Potri.004G201400 Populus trichocarpa HOM05D002338 ORTHO05D006706 2.4e-66 255.8 140 84.3
THA.LOC104826428 Tarenaya hassleriana HOM05D002338 ORTHO05D006706 2.4e-66 255.8 140 85.0
TPR.G4472 Trifolium pratense HOM05D002338 ORTHO05D006706 2.4e-66 255.8 168 73.8
VMungo1080G1495 Vigna mungo HOM05D002338 ORTHO05D006706 2.4e-66 255.8 144 83.3
A04p20960 Brassica napus HOM05D002338 ORTHO05D006706 3.2e-66 255.4 143 85.3
BraA04t17665Z Brassica rapa HOM05D002338 ORTHO05D006706 3.2e-66 255.4 143 85.3
CsaV3_1G015920 Cucumis sativus L. HOM05D002338 ORTHO05D006706 3.2e-66 255.4 139 85.6
MSTRG.12373 Avicennia marina HOM05D002338 ORTHO05D006706 4.1e-66 255.0 144 82.6
Ciclev10028933m.g Citrus clementina HOM05D002338 ORTHO05D006706 4.1e-66 255.0 140 85.0
CsaV3_1G015010 Cucumis sativus L. HOM05D002338 ORTHO05D006706 4.1e-66 255.0 140 85.0
Glyma.12G185700 Glycine max HOM05D002338 ORTHO05D006706 4.1e-66 255.0 144 81.9
Gorai.006G112500 Gossypium raimondii HOM05D002338 ORTHO05D006706 4.1e-66 255.0 143 84.6
Duzib150G1080 Durio zibethinus HOM05D002338 ORTHO05D006706 5.4e-66 254.6 143 83.2
Glyma.13G315800 Glycine max HOM05D002338 ORTHO05D006706 5.4e-66 254.6 144 83.3
Oeu002370.1 Olea europaea HOM05D002338 ORTHO05D006706 5.4e-66 254.6 140 85.7
ClCG01G012190 Citrullus lanatus HOM05D002338 ORTHO05D006706 7.0e-66 254.2 137 86.9
Prupe.6G132000 Prunus persica HOM05D002338 ORTHO05D006706 7.0e-66 254.2 141 83.7
SGA_v2.0_scaffold295G47518 Striga asiatica HOM05D002338 ORTHO05D006706 9.2e-66 253.8 144 81.9
Actinidia37079 Actinidia chinensis HOM05D002338 ORTHO05D006706 1.2e-65 253.4 142 85.9
MELO3C004683.2 Cucumis melo HOM05D002338 ORTHO05D006706 1.6e-65 253.1 140 84.3
Sed0026919 Sechium edule HOM05D002338 ORTHO05D006706 2.0e-65 252.7 140 85.0
Duzib170G1110 Durio zibethinus HOM05D002338 ORTHO05D006706 2.7e-65 252.3 143 82.5
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 3.5e-65 251.9 140 82.1
Sabra04G0136100 Salix brachista HOM05D002338 ORTHO05D006706 3.5e-65 251.9 140 82.9
DCAR_010340 Daucus carota HOM05D002338 ORTHO05D006706 4.6e-65 251.5 144 83.3
Psat1g178360 Pisum sativum HOM05D002338 ORTHO05D006706 6.0e-65 251.1 140 84.3
Os02g0533900 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006706 1.7e-64 249.6 139 84.2
Sc21g0007050 Simmondsia chinensis HOM05D002338 ORTHO05D006706 2.3e-64 249.2 144 83.3
SMO331G0008 Selaginella moellendorffii HOM05D002338 ORTHO05D006706 8.6e-64 247.3 140 84.3
RcHm_v2.0_Chr5g0046351 Rosa chinensis HOM05D002338 ORTHO05D006706 1.1e-63 246.9 143 82.5
THA.LOC104800525 Tarenaya hassleriana HOM05D002338 ORTHO05D006706 1.5e-63 246.5 140 81.4
MSTRG.17703 Avicennia marina HOM05D002338 ORTHO05D006706 2.5e-63 245.7 144 81.2
QL01p012128 Quercus lobata HOM05D002338 ORTHO05D006706 3.3e-63 245.4 182 68.1
Cpa.g.sc195.1 Carica papaya HOM05D002338 ORTHO05D006706 4.3e-63 245.0 168 72.6
Mapoly0103s0045 Marchantia polymorpha HOM05D002338 ORTHO05D006706 4.3e-63 245.0 141 80.9
Pp3c18_8260 Physcomitrium patens HOM05D002338 ORTHO05D006706 4.7e-62 241.5 144 78.5
Haze_23365 Corylus avellana HOM05D002338 ORTHO05D006706 6.2e-62 241.1 181 68.0
AagrBONN_evm.TU.Sc2ySwM_362.1450 Anthoceros agrestis HOM05D002338 ORTHO05D006706 1.4e-61 240.0 158 71.5
Peaxi162Scf00040g00113 Petunia axillaris HOM05D002338 ORTHO05D006706 1.4e-61 240.0 185 67.0
SalBow3G4661 Salvia bowleyana HOM05D002338 ORTHO05D006706 4.0e-61 238.4 163 73.6
unitig_0.g555 Utricularia gibba HOM05D002338 ORTHO05D006706 5.4e-58 228.0 144 77.8
SHI12384 Sapria himalayana HOM05D002338 ORTHO05D006706 1.3e-56 223.4 170 66.5
BolC4t27207H Brassica oleracea HOM05D002338 ORTHO05D006706 2.3e-56 222.6 114 89.5
FvH4_3g25110 Fragaria vesca HOM05D002338 ORTHO05D006706 3.0e-56 222.2 116 89.7
Aa31LG5G8780 Aethionema arabicum HOM05D002338 ORTHO05D006706 6.6e-56 221.1 115 87.8
FAN25G3385 Fragaria x ananassa HOM05D002338 ORTHO05D006706 1.2e-52 210.3 143 74.8
Lj2A965T21 Lonicera japonica HOM05D002338 ORTHO05D006706 5.4e-50 201.4 103 89.3
MD11G1166200 Malus domestica HOM05D002338 ORTHO05D006706 1.5e-47 193.4 144 69.4
SEGI_22372 Sequoiadendron giganteum HOM05D002338 ORTHO05D006706 4.3e-47 191.8 99 87.9
Oeu035434.1 Olea europaea HOM05D002338 ORTHO05D006706 9.6e-47 190.7 105 84.8
arahy.Tifrunner.gnm1.ann1.65JLCH Arachis hypogaea HOM05D002338 ORTHO05D006706 3.8e-43 178.7 99 80.8
Cre12.g535750 Chlamydomonas reinhardtii HOM05D002338 ORTHO05D006706 3.8e-43 178.7 140 61.4
CBR_g2849 Chara braunii HOM05D002338 ORTHO05D000013 3.2e-42 175.6 99 80.8
PRCOL_00003112 Prasinoderma coloniale HOM05D002338 ORTHO05D006706 1.3e-38 163.7 146 55.5
Cre01.g035300 Chlamydomonas reinhardtii HOM05D002338 ORTHO05D006706 5.8e-36 154.8 169 48.5
Actinidia35467 Actinidia chinensis HOM05D002338 ORTHO05D006706 1.0e-32 144.1 71 93.0
Hma1.2p1_0587F.1_g184230 Hydrangea macrophylla HOM05D002338 ORTHO05D006706 7.3e-31 137.9 68 92.6
AT2G27450 Arabidopsis thaliana HOM05D002338 ORTHO05D006706 1.6e-30 136.7 68 91.2
FAN11G3385 Fragaria x ananassa HOM05D002338 ORTHO05D006706 2.1e-30 136.3 143 52.4
Zm00001eb242790 Zea mays HOM05D002338 ORTHO05D006706 9.0e-29 131.0 182 42.3
TWI75G0919 Tripterygium wilfordii HOM05D002338 ORTHO05D006706 3.4e-28 129.0 69 87.0
CSS0028747 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 9.9e-28 127.5 75 81.3
arahy.Tifrunner.gnm1.ann1.EN3ZRJ Arachis hypogaea HOM05D002338 ORTHO05D006706 2.8e-22 109.4 122 48.4
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 1.7e-19 100.1 77 64.9
Lsat_1_v5_gn_5_169081 Lactuca sativa HOM05D004596 ORTHO05D005853 4.9e-19 98.6 52 86.5
C07p34730 Brassica napus HOM05D000939 ORTHO05D000745 4.6e-17 92.0 125 44.0
BolC7t44004H Brassica oleracea HOM05D000939 ORTHO05D000745 4.6e-17 92.0 125 44.0
arahy.Tifrunner.gnm1.ann1.GRS0A1 Arachis hypogaea HOM05D002338 ORTHO05D026935 5.3e-13 78.6 44 79.5
BolC4t23537H Brassica oleracea HOM05D000939 ORTHO05D000745 3.4e-12 75.9 43 76.7
Gohir.D13G227000 Gossypium hirsutum HOM05D002338 ORTHO05D014651 3.0e-08 62.8 45 64.4
BcaC02g08531 Brassica carinata HOM05D012771 ORTHO05D023930 2.2e-06 56.6 49 59.2
BcaC01g05690 Brassica carinata HOM05D032799 ORTHO05D026935 2.8e-06 56.2 30 90.0
BraA01t03258Z Brassica rapa HOM05D000939 ORTHO05D000745 4.8e-06 55.5 77 39.0


User provided reference genes

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