Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 0.0e+00 1094.0 560 100.0
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 8.4e-302 1039.6 561 95.7
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.6e-239 832.8 484 91.7
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.9e-59 234.6 524 37.2
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 3.6e-58 230.3 367 44.1
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 3.0e-57 227.3 363 45.2
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 6.7e-57 226.1 215 59.5
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.5e-56 224.9 519 37.0
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 4.4e-56 223.4 367 44.4
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 7.0e-54 216.1 485 37.1
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 9.1e-54 215.7 483 37.1
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 2.9e-52 210.7 338 44.1
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 3.8e-52 210.3 362 41.7
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 6.5e-52 209.5 432 38.9
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 1.9e-51 208.0 504 36.9
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 3.2e-51 207.2 549 33.9
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.2e-50 205.3 244 53.7
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 1.6e-50 204.9 421 40.1
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 2.7e-50 204.1 364 40.4
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 4.7e-50 203.4 322 42.5
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 4.7e-50 203.4 319 42.6
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 6.1e-50 203.0 270 48.5
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 6.1e-50 203.0 503 35.4
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 6.1e-50 203.0 263 49.8
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 1.8e-49 201.4 208 57.7
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 1.1e-48 198.7 276 46.0
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 1.5e-48 198.4 389 40.1
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 4.4e-48 196.8 335 40.3
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 4.4e-48 196.8 327 44.3
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 4.4e-48 196.8 324 40.4
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 7.4e-48 196.1 276 45.3
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 2.2e-47 194.5 314 42.4
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 1.1e-46 192.2 289 46.0
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 1.1e-46 192.2 350 42.3
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.1e-46 192.2 258 50.8
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 1.8e-46 191.4 332 40.1
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 5.3e-46 189.9 363 39.1
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 7.0e-46 189.5 435 35.2
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.2e-45 188.7 349 40.7
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 7.7e-45 186.0 310 41.9
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.3e-44 185.3 349 40.1
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 2.2e-44 184.5 372 38.7
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 2.2e-44 184.5 525 33.1
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 3.8e-44 183.7 349 40.1
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 6.5e-44 183.0 281 45.6
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 2.5e-43 181.0 601 33.1
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 4.2e-43 180.3 273 47.3
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 7.2e-43 179.5 346 39.9
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 2.1e-42 177.9 296 42.9
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 1.0e-41 175.6 340 41.8
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 2.3e-41 174.5 300 43.0
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 3.0e-41 174.1 296 43.6
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 3.0e-41 174.1 355 38.9
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 4.0e-41 173.7 358 38.5
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 8.8e-41 172.6 194 56.7
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 8.8e-41 172.6 269 43.9
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 2.6e-40 171.0 482 31.7
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 3.3e-40 170.6 253 43.5
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 7.5e-40 169.5 361 37.4
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 9.7e-40 169.1 212 49.1
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 1.7e-39 168.3 274 45.6
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 2.8e-39 167.5 375 33.9
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 4.8e-39 166.8 324 38.9
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 6.3e-39 166.4 488 31.6
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 1.4e-38 165.2 213 46.0
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 2.4e-38 164.5 258 44.2
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.2e-37 162.2 283 41.3
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 1.2e-37 162.2 274 43.1
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 1.6e-37 161.8 462 32.5
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 2.0e-37 161.4 278 43.5
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 3.5e-37 160.6 409 36.7
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.8e-36 157.1 260 41.5
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.7e-34 151.0 300 38.7
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.7e-34 151.0 260 40.4
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.6e-34 150.6 300 38.7
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.3e-33 147.9 259 40.2
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 3.0e-33 147.5 264 39.4
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 3.0e-33 147.5 264 39.4
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 4.0e-33 147.1 250 44.0
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 5.2e-33 146.7 281 38.1
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 5.2e-33 146.7 264 39.0
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 5.2e-33 146.7 264 39.0
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 5.2e-33 146.7 264 39.0
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 2.0e-32 144.8 335 36.1
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 2.0e-32 144.8 287 39.4
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 4.4e-32 143.7 282 39.7
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 7.5e-32 142.9 278 39.9
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 9.8e-32 142.5 334 36.2
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 9.8e-32 142.5 365 35.6
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 1.3e-31 142.1 309 38.2
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 1.7e-31 141.7 177 48.0
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 1.7e-31 141.7 315 37.8
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 2.2e-31 141.4 255 41.6
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 2.8e-31 141.0 321 37.7
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 1.4e-30 138.7 238 40.8
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 5.9e-29 133.3 530 29.6
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 1.7e-28 131.7 347 32.9
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 5.0e-28 130.2 233 41.6
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.8e-25 121.7 181 47.0
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 2.0e-24 118.2 182 39.0
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 1.3e-23 115.5 208 41.8
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 1.8e-22 111.7 185 41.6
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.7e-21 107.8 257 34.6
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 1.0e-20 105.9 205 34.6
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 2.3e-20 104.8 278 34.2
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 9.5e-19 99.4 194 38.7
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 1.2e-18 99.0 261 29.5
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 1.6e-18 98.6 246 32.5
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 3.1e-17 94.4 167 40.1
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 4.0e-17 94.0 379 28.2
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 1.2e-16 92.4 181 35.9
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 2.0e-16 91.7 259 34.4
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 4.4e-16 90.5 202 36.6
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 9.2e-14 82.8 113 45.1
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 1.3e-12 79.0 125 40.0
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 1.3e-12 79.0 199 34.7
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.7e-12 78.6 127 44.1
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 3.9e-12 77.4 117 41.0
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 1.1e-11 75.9 113 41.6
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 2.5e-11 74.7 180 33.9
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 3.6e-10 70.9 182 32.4
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 3.1e-09 67.8 133 38.3
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 3.1e-09 67.8 220 32.7
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 6.8e-09 66.6 232 27.2
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 1.5e-08 65.5 79 46.8
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 3.4e-08 64.3 165 33.3
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 4.4e-08 63.9 212 29.7
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.7e-07 62.0 114 38.6
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.9e-07 60.5 249 30.9
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 1.1e-06 59.3 152 30.9
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.4e-06 58.9 226 28.3
Zm00001eb120040 Zea mays HOM05D028877 ORTHO05D006450 1.4e-06 58.9 85 42.4
Zm00001eb136510 Zea mays HOM05D028877 ORTHO05D006450 1.4e-06 58.9 85 42.4
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 3.2e-06 57.8 122 34.4
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 5.4e-06 57.0 188 30.3
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 9.2e-06 56.2 148 31.8


User provided reference genes

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