Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.9e-226 788.9 407 100.0
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 3.9e-224 781.2 407 98.8
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 1.4e-160 570.1 409 73.8
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 7.1e-157 557.8 410 71.5
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 3.5e-156 555.4 410 69.8
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 2.3e-155 552.7 411 69.8
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 1.5e-154 550.1 410 70.0
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 2.5e-154 549.3 411 68.9
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 1.6e-153 546.6 408 69.4
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 2.8e-153 545.8 410 69.5
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 2.8e-153 545.8 408 69.9
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 2.8e-153 545.8 411 67.6
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 6.2e-153 544.7 410 69.3
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 6.2e-153 544.7 417 66.9
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 1.8e-152 543.1 409 70.7
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 3.1e-152 542.3 407 68.1
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 4.0e-152 542.0 409 69.4
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 5.2e-152 541.6 410 67.8
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 1.2e-151 540.4 406 67.2
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 2.0e-151 539.7 412 68.2
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 3.4e-151 538.9 410 68.0
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 4.4e-151 538.5 410 68.3
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 5.8e-151 538.1 408 69.4
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 7.6e-151 537.7 410 68.3
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 9.9e-151 537.3 410 68.8
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 1.3e-150 537.0 410 69.0
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 3.8e-150 535.4 408 68.4
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 3.8e-150 535.4 410 68.8
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 4.9e-150 535.0 410 68.0
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 8.4e-150 534.3 410 68.0
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.4e-149 533.5 417 67.4
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.9e-149 533.1 411 67.4
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 2.4e-149 532.7 410 66.3
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 3.2e-149 532.3 409 67.7
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 9.3e-149 530.8 410 66.8
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 9.3e-149 530.8 408 67.6
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 1.2e-148 530.4 410 67.1
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 1.2e-148 530.4 408 67.4
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.6e-148 530.0 409 68.0
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 1.6e-148 530.0 408 66.9
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 2.7e-148 529.3 410 68.3
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 4.6e-148 528.5 407 68.6
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 4.6e-148 528.5 410 66.8
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 1.0e-147 527.3 410 65.9
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 1.3e-147 526.9 408 67.4
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 3.0e-147 525.8 409 66.5
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 3.0e-147 525.8 407 65.8
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 3.9e-147 525.4 407 65.1
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 3.9e-147 525.4 407 66.6
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 3.9e-147 525.4 408 66.9
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 5.1e-147 525.0 410 67.6
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 6.6e-147 524.6 414 65.7
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 1.1e-146 523.9 413 65.6
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 1.9e-146 523.1 411 67.6
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 2.5e-146 522.7 409 68.7
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 3.3e-146 522.3 411 65.7
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 3.3e-146 522.3 403 66.7
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 5.6e-146 521.5 403 66.3
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 5.6e-146 521.5 410 66.6
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 7.3e-146 521.2 402 65.4
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 7.3e-146 521.2 410 66.3
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 2.8e-145 519.2 403 65.5
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 4.8e-145 518.5 404 66.3
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 4.8e-145 518.5 437 62.5
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 6.2e-145 518.1 403 66.0
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 6.2e-145 518.1 410 65.4
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 6.2e-145 518.1 409 65.5
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 8.1e-145 517.7 410 65.6
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 1.4e-144 516.9 410 64.6
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 2.4e-144 516.2 403 65.3
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 2.4e-144 516.2 405 63.5
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 2.4e-144 516.2 410 65.9
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 3.1e-144 515.8 403 66.0
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 4.0e-144 515.4 410 65.1
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 6.9e-144 514.6 410 65.1
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 1.5e-143 513.5 410 64.9
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 2.0e-143 513.1 410 65.6
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 2.6e-143 512.7 401 67.8
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 5.8e-143 511.5 407 65.4
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 9.9e-143 510.8 445 62.9
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 2.2e-142 509.6 442 62.2
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 3.8e-142 508.8 412 65.3
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 6.4e-142 508.1 412 65.3
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 1.1e-141 507.3 442 63.8
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 1.9e-141 506.5 439 61.5
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 4.2e-141 505.4 442 62.0
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 5.4e-141 505.0 407 63.9
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 9.3e-141 504.2 403 65.3
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 6.0e-140 501.5 404 64.9
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 3.9e-139 498.8 407 64.4
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 2.5e-138 496.1 420 63.3
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 2.5e-138 496.1 405 63.7
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 9.6e-138 494.2 409 63.1
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 4.8e-137 491.9 403 64.3
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 4.5e-135 485.3 406 64.8
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 3.2e-133 479.2 371 66.8
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 5.5e-133 478.4 402 62.4
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 1.6e-132 476.9 459 56.2
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 1.3e-131 473.8 402 61.9
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 1.3e-131 473.8 402 61.7
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 6.7e-131 471.5 368 65.5
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 3.3e-130 469.2 409 61.1
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.2e-127 460.7 416 60.1
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 3.4e-127 459.1 404 60.1
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 3.4e-127 459.1 406 61.1
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 2.1e-124 449.9 456 54.4
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 3.5e-124 449.1 409 61.4
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 1.5e-119 433.7 350 64.6
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 5.1e-107 392.1 431 52.7
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 3.3e-106 389.4 452 47.8
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 5.7e-106 388.7 411 50.6
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 1.8e-104 383.6 432 47.9
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 8.8e-99 364.8 460 45.2
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 8.0e-92 341.7 300 60.3
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 5.2e-91 339.0 283 63.3
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 2.8e-89 333.2 410 47.6
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 1.7e-81 307.4 287 56.4
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 3.7e-81 306.2 226 68.1
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 1.3e-73 281.2 428 42.3
Oeu050624.1 Olea europaea HOM05D004340 ORTHO05D006363 5.4e-64 249.2 187 70.6
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 9.2e-64 248.4 355 38.3
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.1e-59 235.0 186 67.2
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 7.5e-58 228.8 187 62.6
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 2.7e-55 220.3 170 64.1
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 5.6e-53 212.6 196 57.1
CDE04G0644 Ceratophyllum demersum HOM05D004340 ORTHO05D006363 1.4e-40 171.4 120 73.3
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 4.3e-37 159.8 188 39.4
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 4.4e-34 149.8 104 76.9
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 6.6e-30 136.0 286 28.3
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 8.7e-22 109.0 126 51.6
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 2.9e-17 94.0 73 57.5
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 4.9e-17 93.2 149 38.9
PSO423G0166 Papaver somniferum HOM05D004340 ORTHO05D006363 1.0e-14 85.5 106 50.0
Lj1g0006325 Lotus japonicus HOM05D000319 ORTHO05D000903 1.3e-12 78.6 175 27.4
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 1.4e-11 75.1 60 55.0
BolC2t12024H Brassica oleracea HOM05D004340 ORTHO05D040691 3.1e-11 73.9 102 42.2
Nn1g04519 Nelumbo nucifera HOM05D004340 ORTHO05D006363 2.6e-10 70.9 143 34.3
Eucgr.B01515 Eucalyptus grandis HOM05D000319 ORTHO05D192641 7.6e-10 69.3 182 28.0
Atru.chr4.2808 Acer truncatum HOM05D000319 ORTHO05D000903 1.0e-09 68.9 170 32.4
COL.COLO4_35078 Corchorus olitorius HOM05D000319 ORTHO05D000903 2.2e-09 67.8 193 26.9
Os01g0369200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D000903 2.2e-09 67.8 171 26.9
SMO146G0265 Selaginella moellendorffii HOM05D000319 ORTHO05D000903 3.8e-09 67.0 178 30.9
FAN17G0542 Fragaria x ananassa HOM05D000319 ORTHO05D204892 6.5e-09 66.2 199 22.1
FAN17G1836 Fragaria x ananassa HOM05D000319 ORTHO05D201885 1.1e-08 65.5 201 22.9
RcHm_v2.0_Chr7g0204451 Rosa chinensis HOM05D000319 ORTHO05D348206 1.1e-08 65.5 197 24.9
Ciclev10019010m.g Citrus clementina HOM05D000319 ORTHO05D000903 1.4e-08 65.1 196 28.6
Eucgr.B01516 Eucalyptus grandis HOM05D000319 ORTHO05D194654 1.4e-08 65.1 182 27.5
FAN04G2239 Fragaria x ananassa HOM05D000319 ORTHO05D000903 1.4e-08 65.1 193 26.9
FAN24G2810 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-08 64.7 62 56.5
PGR004G2830 Punica granatum HOM05D000319 ORTHO05D000903 1.9e-08 64.7 169 29.6
FvH4_5g19660 Fragaria vesca HOM05D000319 ORTHO05D000903 2.5e-08 64.3 194 27.8
FAN18G0364 Fragaria x ananassa HOM05D000319 ORTHO05D000903 2.5e-08 64.3 194 27.8
Sed0010368 Sechium edule HOM05D000319 ORTHO05D000903 3.2e-08 63.9 170 30.6
Cfa015371 Carpinus fangiana HOM05D000319 ORTHO05D000903 4.2e-08 63.5 170 30.0
FAN13G0014 Fragaria x ananassa HOM05D000319 ORTHO05D000903 4.2e-08 63.5 194 27.3
MCO07G183 Micromonas commoda HOM05D000319 ORTHO05D000903 9.3e-08 62.4 291 22.7
Thhalv10028463m.g Eutrema salsugineum HOM05D000319 ORTHO05D000903 1.2e-07 62.0 188 28.7
Lalb_Chr07g0177651 Lupinus albus HOM05D000319 ORTHO05D000903 1.2e-07 62.0 170 29.4
SGA_v2.0_scaffold428G51519 Striga asiatica HOM05D000319 ORTHO05D000903 1.2e-07 62.0 194 26.8
SGA_v2.0_scaffold57G20224 Striga asiatica HOM05D000319 ORTHO05D000903 1.2e-07 62.0 198 27.3
Cre12.g516500 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D003924 1.6e-07 61.6 223 22.0
Haze_01230 Corylus avellana HOM05D000319 ORTHO05D000903 1.6e-07 61.6 170 28.8
Aqoxy2G03037 Aquilegia oxysepala HOM05D000319 ORTHO05D000903 2.1e-07 61.2 179 25.1
Prupe.8G255500 Prunus persica HOM05D000319 ORTHO05D000903 2.7e-07 60.8 170 29.4
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 4.6e-07 60.1 71 52.1
SGA_v2.0_scaffold86G26892 Striga asiatica HOM05D000319 ORTHO05D000903 4.6e-07 60.1 201 26.4
Prupe.5G063700 Prunus persica HOM05D000319 ORTHO05D000903 1.0e-06 58.9 178 28.1
Sed0015196 Sechium edule HOM05D000319 ORTHO05D000903 1.0e-06 58.9 179 28.5
C02p59600 Brassica napus HOM05D004340 ORTHO05D040691 1.8e-06 58.2 50 50.0
CARHR002310 Cardamine hirsuta HOM05D000319 ORTHO05D000903 1.8e-06 58.2 193 24.4
FvH4_5g19701 Fragaria vesca HOM05D000319 ORTHO05D022606 2.3e-06 57.8 199 25.6
CARHR041260 Cardamine hirsuta HOM05D000319 ORTHO05D000903 3.0e-06 57.4 203 23.2
AT1G02980 Arabidopsis thaliana HOM05D000319 ORTHO05D000903 6.7e-06 56.2 172 25.6


User provided reference genes

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