Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021301 Vanilla planifolia HOM05D000921 ORTHO05D004153 3.7e-168 594.7 291 100.0
Dinv32883 Davidia involucrata HOM05D000921 ORTHO05D004153 1.7e-91 340.1 277 61.7
TAR633G0413 Trochodendron aralioides HOM05D000921 ORTHO05D004153 2.8e-91 339.3 275 60.7
Thecc.01G271200 Theobroma cacao HOM05D000921 ORTHO05D004153 2.4e-90 336.3 270 61.5
Haze_04641 Corylus avellana HOM05D000921 ORTHO05D004153 3.5e-89 332.4 274 60.2
Duzib138G1896 Durio zibethinus HOM05D000921 ORTHO05D004153 4.5e-89 332.0 270 61.5
Glyma.02G144200 Glycine max HOM05D000921 ORTHO05D004153 5.9e-89 331.6 270 62.2
Glyma.10G030000 Glycine max HOM05D000921 ORTHO05D004153 1.0e-88 330.9 270 61.9
CsaV3_7G027700 Cucumis sativus L. HOM05D000921 ORTHO05D004153 1.3e-88 330.5 274 61.7
MELO3C015783.2 Cucumis melo HOM05D000921 ORTHO05D004153 1.7e-88 330.1 274 62.4
Gohir.D11G131000 Gossypium hirsutum HOM05D000921 ORTHO05D004153 1.7e-88 330.1 270 60.4
Gorai.007G140000 Gossypium raimondii HOM05D000921 ORTHO05D004153 1.7e-88 330.1 270 60.4
Manes.01G203800 Manihot esculenta HOM05D000921 ORTHO05D004153 2.2e-88 329.7 261 65.5
Potri.005G215400 Populus trichocarpa HOM05D000921 ORTHO05D004153 2.9e-88 329.3 274 61.3
Cfa006203 Carpinus fangiana HOM05D000921 ORTHO05D004153 3.8e-88 328.9 274 59.9
Gohir.A11G125600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 3.8e-88 328.9 270 60.4
Lj5g0027434 Lotus japonicus HOM05D000921 ORTHO05D004153 3.8e-88 328.9 269 62.8
Sed0015319 Sechium edule HOM05D000921 ORTHO05D004153 3.8e-88 328.9 274 60.9
vmacro02613 Vaccinium macrocarpon HOM05D000921 ORTHO05D004153 3.8e-88 328.9 269 61.0
Aa31LG1G9470 Aethionema arabicum HOM05D000921 ORTHO05D004153 5.0e-88 328.6 273 61.9
Aqoxy5G00390 Aquilegia oxysepala HOM05D000921 ORTHO05D004153 5.0e-88 328.6 266 61.7
Nn6g33594 Nelumbo nucifera HOM05D000921 ORTHO05D004153 6.5e-88 328.2 270 60.4
Ca_09726_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004153 8.5e-88 327.8 270 61.5
Duzib133G0456 Durio zibethinus HOM05D000921 ORTHO05D004153 1.1e-87 327.4 270 60.4
MD03G1257800 Malus domestica HOM05D000921 ORTHO05D004153 1.1e-87 327.4 270 61.1
RcHm_v2.0_Chr6g0289881 Rosa chinensis HOM05D000921 ORTHO05D004153 1.5e-87 327.0 270 59.3
CANSAT25G1208 Cannabis sativa HOM05D000921 ORTHO05D004153 1.9e-87 326.6 275 60.0
QL12p042334 Quercus lobata HOM05D000921 ORTHO05D004153 1.9e-87 326.6 274 60.2
Prupe.8G234500 Prunus persica HOM05D000921 ORTHO05D004153 2.5e-87 326.2 270 60.7
Cc01_g18990 Coffea canephora HOM05D000921 ORTHO05D004153 4.2e-87 325.5 270 61.9
Lalb_Chr06g0162771 Lupinus albus HOM05D000921 ORTHO05D004153 5.5e-87 325.1 272 61.4
ClCG09G007420 Citrullus lanatus HOM05D000921 ORTHO05D004153 9.4e-87 324.3 274 60.6
PSO210G1924 Papaver somniferum HOM05D000921 ORTHO05D004153 9.4e-87 324.3 270 60.7
MD11G1278500 Malus domestica HOM05D000921 ORTHO05D004153 1.2e-86 323.9 272 60.3
Hma1.2p1_0760F.1_g214090 Hydrangea macrophylla HOM05D000921 ORTHO05D004153 1.6e-86 323.6 273 57.5
PGR044G0864 Punica granatum HOM05D000921 ORTHO05D004153 1.6e-86 323.6 256 62.1
Atru.chr5.1523 Acer truncatum HOM05D000921 ORTHO05D004153 2.1e-86 323.2 270 59.6
Actinidia19962 Actinidia chinensis HOM05D000921 ORTHO05D004153 2.1e-86 323.2 250 63.6
arahy.Tifrunner.gnm1.ann1.BY50EL Arachis hypogaea HOM05D000921 ORTHO05D004153 2.1e-86 323.2 270 61.9
CiPaw.07G086700 Carya illinoinensis HOM05D000921 ORTHO05D004153 2.1e-86 323.2 275 60.7
Rhsim13G0028700 Rhododendron simsii HOM05D000921 ORTHO05D004153 2.7e-86 322.8 268 59.3
Sp1g02060 Schrenkiella parvula HOM05D000921 ORTHO05D004153 3.6e-86 322.4 269 62.1
Psat6g058840 Pisum sativum HOM05D000921 ORTHO05D004153 6.1e-86 321.6 270 60.7
THA.LOC104825985 Tarenaya hassleriana HOM05D000921 ORTHO05D004153 8.0e-86 321.2 269 61.7
A09p68370 Brassica napus HOM05D000921 ORTHO05D004153 1.0e-85 320.9 269 61.7
Thhalv10006519m.g Eutrema salsugineum HOM05D000921 ORTHO05D004153 1.8e-85 320.1 269 62.1
Carub.0001s0220 Capsella rubella HOM05D000921 ORTHO05D004153 2.3e-85 319.7 269 61.7
Medtr1g071260 Medicago truncatula HOM05D000921 ORTHO05D004153 2.3e-85 319.7 256 62.9
Nitab4.5_0003424g0020 Nicotiana tabacum HOM05D000921 ORTHO05D004153 2.3e-85 319.7 271 59.0
Solyc09g065700.3 Solanum lycopersicum HOM05D000921 ORTHO05D004153 3.0e-85 319.3 279 58.4
Sopen09g027450 Solanum pennellii HOM05D000921 ORTHO05D004153 3.0e-85 319.3 279 58.4
AT1G03060 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 4.0e-85 318.9 269 61.7
BraA09t42173Z Brassica rapa HOM05D000921 ORTHO05D004153 4.0e-85 318.9 269 61.7
AL1G12520 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 6.7e-85 318.2 269 61.3
C08p52940 Brassica napus HOM05D000921 ORTHO05D004153 6.7e-85 318.2 269 61.3
BolC8t52810H Brassica oleracea HOM05D000921 ORTHO05D004153 6.7e-85 318.2 269 61.3
CSS0010203 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 6.7e-85 318.2 269 61.0
FvH4_2g22920 Fragaria vesca HOM05D000921 ORTHO05D004153 6.7e-85 318.2 272 59.6
FAN24G0847 Fragaria x ananassa HOM05D000921 ORTHO05D004153 6.7e-85 318.2 272 59.6
Dinv22500 Davidia involucrata HOM05D000921 ORTHO05D004153 8.8e-85 317.8 273 57.9
ECA248G3113 Erigeron canadensis HOM05D000921 ORTHO05D004153 8.8e-85 317.8 274 61.3
FAN20G3205 Fragaria x ananassa HOM05D000921 ORTHO05D004153 8.8e-85 317.8 272 59.6
Oeu035109.1 Olea europaea HOM05D000921 ORTHO05D004153 8.8e-85 317.8 280 58.2
TPR.G34892 Trifolium pratense HOM05D000921 ORTHO05D004153 8.8e-85 317.8 225 68.4
ATR0665G073 Amborella trichopoda HOM05D000921 ORTHO05D004153 1.2e-84 317.4 281 55.9
CARHR002410 Cardamine hirsuta HOM05D000921 ORTHO05D004153 1.2e-84 317.4 266 62.0
BcaB03g15744 Brassica carinata HOM05D000921 ORTHO05D004153 1.5e-84 317.0 269 61.0
Peaxi162Scf00259g00414 Petunia axillaris HOM05D000921 ORTHO05D004153 1.5e-84 317.0 271 58.3
C05p01680 Brassica napus HOM05D000921 ORTHO05D004153 2.0e-84 316.6 269 61.3
BolC5t28947H Brassica oleracea HOM05D000921 ORTHO05D004153 2.0e-84 316.6 269 61.3
BraA10t42445Z Brassica rapa HOM05D000921 ORTHO05D004153 2.0e-84 316.6 269 61.3
CSS0042369 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 2.0e-84 316.6 269 60.6
Sabra05G0164600 Salix brachista HOM05D000921 ORTHO05D004153 2.0e-84 316.6 275 60.7
CSS0032745 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 2.6e-84 316.2 273 58.6
CAN.G1072.6 Capsicum annuum HOM05D000921 ORTHO05D004153 2.6e-84 316.2 271 58.3
FAN15G1223 Fragaria x ananassa HOM05D000921 ORTHO05D004153 3.3e-84 315.8 272 59.2
Lsat_1_v5_gn_5_185441 Lactuca sativa HOM05D000921 ORTHO05D004153 9.7e-84 314.3 266 61.7
TWI12G1077 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 9.7e-84 314.3 266 59.8
Gohir.A08G045265 Gossypium hirsutum HOM05D000921 ORTHO05D004153 1.3e-83 313.9 271 59.4
Nn1g00513 Nelumbo nucifera HOM05D000921 ORTHO05D004153 2.8e-83 312.8 271 56.8
COL.COLO4_09186 Corchorus olitorius HOM05D000921 ORTHO05D004153 3.7e-83 312.4 273 57.1
Ciclev10018426m.g Citrus clementina HOM05D000921 ORTHO05D004153 6.3e-83 311.6 275 58.2
TWI18G0154 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 8.3e-83 311.2 270 58.1
Potri.002G047700 Populus trichocarpa HOM05D000921 ORTHO05D004153 1.1e-82 310.8 274 58.4
Lj1C56G6 Lonicera japonica HOM05D000921 ORTHO05D004153 3.1e-82 309.3 269 58.7
Lalb_Chr01g0019981 Lupinus albus HOM05D000921 ORTHO05D004153 3.1e-82 309.3 274 58.0
SGA_v2.0_scaffold1G00535 Striga asiatica HOM05D000921 ORTHO05D004153 5.3e-82 308.5 272 59.2
Gohir.A08G187300 Gossypium hirsutum HOM05D000921 ORTHO05D004153 2.0e-81 306.6 272 58.8
Gohir.D08G055600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 3.5e-81 305.8 271 59.0
Gorai.004G217600 Gossypium raimondii HOM05D000921 ORTHO05D004153 3.5e-81 305.8 272 58.5
Actinidia09105 Actinidia chinensis HOM05D000921 ORTHO05D004153 4.5e-81 305.4 261 59.0
Eucgr.K03323 Eucalyptus grandis HOM05D000921 ORTHO05D004153 7.7e-81 304.7 270 58.1
Gorai.004G056400 Gossypium raimondii HOM05D000921 ORTHO05D004153 7.7e-81 304.7 271 58.7
Lj2C1164G7 Lonicera japonica HOM05D000921 ORTHO05D004153 1.7e-80 303.5 250 60.4
Zm00001eb056940 Zea mays HOM05D000921 ORTHO05D004153 2.9e-80 302.8 280 54.6
Sc17g0001140 Simmondsia chinensis HOM05D000921 ORTHO05D004153 3.8e-80 302.4 278 55.4
Gohir.D08G205600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 5.0e-80 302.0 272 58.1
SalBow4G3326 Salvia bowleyana HOM05D000921 ORTHO05D004153 6.5e-80 301.6 269 56.5
HanXRQChr01g0005671 Helianthus annuus HOM05D000921 ORTHO05D004153 8.5e-80 301.2 285 58.2
Phvul.007G175300 Phaseolus vulgaris HOM05D000921 ORTHO05D004153 8.5e-80 301.2 269 57.6
arahy.Tifrunner.gnm1.ann1.EGZY1N Arachis hypogaea HOM05D000921 ORTHO05D004153 1.1e-79 300.8 267 57.7
arahy.Tifrunner.gnm1.ann1.BT7PUB Arachis hypogaea HOM05D000921 ORTHO05D004153 3.2e-79 299.3 267 57.3
arahy.Tifrunner.gnm1.ann1.IAH9UB Arachis hypogaea HOM05D000921 ORTHO05D004153 4.2e-79 298.9 251 59.8
BcaC07g42269 Brassica carinata HOM05D000921 ORTHO05D004153 9.4e-79 297.7 269 58.7
A10p01690 Brassica napus HOM05D000921 ORTHO05D004153 9.4e-79 297.7 206 70.9
Sabra02G0038900 Salix brachista HOM05D000921 ORTHO05D004153 4.7e-78 295.4 274 56.9
Hund09551 Selenicereus undatus HOM05D000921 ORTHO05D004153 1.4e-77 293.9 279 55.2
Sc05g0001320 Simmondsia chinensis HOM05D000921 ORTHO05D004153 1.8e-77 293.5 274 52.9
Migut.D00355 Erythranthe guttata HOM05D000921 ORTHO05D004153 1.2e-76 290.8 269 56.1
AUR62011970 Chenopodium quinoa HOM05D000921 ORTHO05D004153 4.4e-76 288.9 280 53.9
AUR62032282 Chenopodium quinoa HOM05D000921 ORTHO05D004153 4.4e-76 288.9 277 53.8
CDE04G2373 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 2.4e-74 283.1 270 54.4
AT4G02660 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 4.1e-74 282.3 233 61.4
HanXRQChr06g0177821 Helianthus annuus HOM05D000921 ORTHO05D004153 4.1e-74 282.3 221 65.2
SEGI_18450 Sequoiadendron giganteum HOM05D000921 ORTHO05D004153 3.5e-73 279.3 275 52.0
EL10Ac5g10491 Beta vulgaris HOM05D000921 ORTHO05D004153 4.5e-73 278.9 278 52.5
BraA03t12271Z Brassica rapa HOM05D000921 ORTHO05D004153 5.9e-73 278.5 273 52.4
AL6G50380 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 7.7e-73 278.1 228 61.4
A03p30920 Brassica napus HOM05D000921 ORTHO05D004153 7.7e-73 278.1 273 52.0
Sp6g02580 Schrenkiella parvula HOM05D000921 ORTHO05D004153 7.7e-73 278.1 273 53.1
C03p37700 Brassica napus HOM05D000921 ORTHO05D004153 1.0e-72 277.7 273 52.0
BolC3t16059H Brassica oleracea HOM05D000921 ORTHO05D004153 1.0e-72 277.7 273 52.0
MSTRG.21525 Avicennia marina HOM05D000921 ORTHO05D004153 1.3e-72 277.3 269 54.3
Lsat_1_v5_gn_8_93941 Lactuca sativa HOM05D000921 ORTHO05D004153 8.6e-72 274.6 233 59.7
Ah.11g050210 Amaranthus hybridus HOM05D000921 ORTHO05D004153 4.2e-71 272.3 281 52.3
unitig_61.g26265 Utricularia gibba HOM05D000921 ORTHO05D004153 4.2e-71 272.3 231 58.4
Hund02865 Selenicereus undatus HOM05D000921 ORTHO05D004153 4.7e-70 268.9 268 50.7
CARHR250960 Cardamine hirsuta HOM05D000921 ORTHO05D004153 1.8e-69 266.9 230 58.7
ECA236G3737 Erigeron canadensis HOM05D000921 ORTHO05D004153 3.0e-69 266.2 216 60.6
BcaC01g06740 Brassica carinata HOM05D000921 ORTHO05D004153 4.0e-69 265.8 210 61.0
PSO461G0055 Papaver somniferum HOM05D000921 ORTHO05D004153 5.2e-69 265.4 262 53.4
SHI10018 Sapria himalayana HOM05D000921 ORTHO05D004153 8.9e-69 264.6 228 57.5
Carub.0006s3446 Capsella rubella HOM05D000921 ORTHO05D004153 2.0e-68 263.5 272 52.6
GSVIVG01003123001 Vitis vinifera HOM05D000921 ORTHO05D004153 1.8e-66 256.9 253 56.5
Oeu002265.1 Olea europaea HOM05D000921 ORTHO05D004153 2.7e-65 253.1 275 51.3
HanXRQChr04g0113931 Helianthus annuus HOM05D000921 ORTHO05D004153 5.6e-63 245.4 245 52.2
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 5.2e-61 238.8 209 56.0
Pp3c5_2890 Physcomitrium patens HOM05D000921 ORTHO05D004153 7.0e-58 228.4 205 56.1
Pp3c5_2897 Physcomitrium patens HOM05D000921 ORTHO05D004153 7.0e-58 228.4 205 56.1
Pp3c6_26100 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.1e-55 221.1 273 45.8
SMO236G0048 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 2.1e-54 216.9 204 52.0
SMO370G0001 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 2.1e-54 216.9 204 52.0
Mapoly0082s0083 Marchantia polymorpha HOM05D000921 ORTHO05D004153 1.1e-53 214.5 206 52.4
Nitab4.5_0000459g0090 Nicotiana tabacum HOM05D000921 ORTHO05D004153 1.3e-51 207.6 189 56.6
Pp3c16_11700 Physcomitrium patens HOM05D000921 ORTHO05D004153 3.2e-50 203.0 279 39.8
Pp3c16_11705 Physcomitrium patens HOM05D000921 ORTHO05D004153 3.2e-50 203.0 279 39.8
Pp3c6_5700 Physcomitrium patens HOM05D000921 ORTHO05D004153 3.5e-49 199.5 237 47.3
Pp3c6_5706 Physcomitrium patens HOM05D000921 ORTHO05D004153 3.5e-49 199.5 237 47.3
Cpa.g.sc52.120 Carica papaya HOM05D000921 ORTHO05D004153 3.1e-45 186.4 174 57.5
CDE10G0462 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 2.9e-43 179.9 128 64.1
FAN20G0191 Fragaria x ananassa HOM05D000921 ORTHO05D004153 5.8e-36 155.6 156 51.3
Hund09555 Selenicereus undatus HOM05D000921 ORTHO05D004153 1.7e-35 154.1 185 42.7
AUR62011967 Chenopodium quinoa HOM05D000921 ORTHO05D004153 7.8e-25 118.6 182 35.7
AUR62032279 Chenopodium quinoa HOM05D000921 ORTHO05D004153 7.8e-25 118.6 182 35.2
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 3.3e-23 113.2 205 34.1
CAN.G1355.5 Capsicum annuum HOM05D000921 ORTHO05D004153 6.2e-14 82.4 78 52.6


User provided reference genes

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