Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 2.8e-256 888.3 492 100.0
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 1.4e-103 380.9 496 47.6
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 7.9e-102 375.2 490 49.6
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.0e-101 374.8 380 57.1
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 1.3e-101 374.4 407 54.8
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 2.4e-98 363.6 381 55.1
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 9.0e-98 361.7 406 54.2
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 2.7e-94 350.1 474 51.1
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 3.5e-94 349.7 387 51.4
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 4.6e-94 349.4 376 55.3
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 6.0e-94 349.0 501 47.7
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 1.0e-93 348.2 381 53.5
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 2.3e-93 347.1 384 53.1
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 3.0e-93 346.7 477 50.7
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 8.7e-93 345.1 477 50.5
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.5e-92 344.4 403 51.6
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 1.5e-92 344.4 502 49.0
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 2.5e-92 343.6 377 52.5
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 4.3e-92 342.8 406 54.7
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 9.6e-92 341.7 506 48.2
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 1.3e-91 341.3 533 43.7
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.6e-91 340.9 349 56.7
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 1.6e-91 340.9 382 52.4
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 4.8e-91 339.3 394 50.3
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 4.8e-91 339.3 506 44.9
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 1.1e-90 338.2 514 44.2
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 2.4e-90 337.0 517 45.6
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 3.1e-90 336.7 389 53.0
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 3.1e-90 336.7 396 51.0
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 4.0e-90 336.3 529 42.3
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 5.3e-90 335.9 507 44.4
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 6.9e-90 335.5 377 53.6
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 1.2e-89 334.7 499 44.7
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.5e-89 334.3 378 53.7
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 2.0e-89 334.0 394 51.0
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 2.6e-89 333.6 392 51.3
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 2.6e-89 333.6 530 43.2
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 5.8e-89 332.4 393 50.9
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 7.6e-89 332.0 392 51.3
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.0e-88 331.6 376 52.7
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 1.0e-88 331.6 382 52.9
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 1.3e-88 331.3 393 50.6
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 1.3e-88 331.3 393 50.6
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 1.7e-88 330.9 420 49.8
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 1.7e-88 330.9 475 45.9
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 2.2e-88 330.5 499 46.5
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 2.9e-88 330.1 317 56.5
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 2.9e-88 330.1 353 54.7
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 2.9e-88 330.1 516 42.4
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 2.9e-88 330.1 401 50.1
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.9e-88 330.1 387 52.2
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 3.8e-88 329.7 397 51.1
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 5.0e-88 329.3 509 47.5
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 5.0e-88 329.3 400 51.5
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 6.5e-88 328.9 498 44.4
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 8.4e-88 328.6 400 50.5
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.1e-87 328.2 512 48.4
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 1.1e-87 328.2 381 52.8
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 1.1e-87 328.2 394 51.8
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 1.9e-87 327.4 532 41.7
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 5.5e-87 325.9 520 43.7
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 1.2e-86 324.7 529 43.3
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 1.6e-86 324.3 514 43.8
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 2.1e-86 323.9 498 45.8
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 2.1e-86 323.9 498 45.8
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.7e-86 323.6 538 42.4
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 3.5e-86 323.2 385 51.7
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.6e-86 322.8 370 53.8
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 4.6e-86 322.8 509 43.4
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 6.1e-86 322.4 522 44.3
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 1.8e-85 320.9 415 50.1
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 3.9e-85 319.7 384 50.5
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 5.1e-85 319.3 423 48.2
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 1.9e-84 317.4 500 44.8
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 1.9e-84 317.4 502 43.2
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 2.5e-84 317.0 511 42.3
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 3.3e-84 316.6 477 47.6
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 4.3e-84 316.2 393 48.9
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 7.4e-84 315.5 356 52.0
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 7.4e-84 315.5 396 49.0
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.3e-83 314.7 384 49.5
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 2.2e-83 313.9 425 47.5
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 2.8e-83 313.5 314 56.4
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.7e-83 313.2 387 48.1
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 3.7e-83 313.2 463 44.9
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 4.8e-83 312.8 388 47.4
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 6.3e-83 312.4 378 49.7
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.3e-83 312.4 387 47.8
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 6.3e-83 312.4 372 51.3
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.1e-82 311.6 504 44.6
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 1.4e-82 311.2 387 48.1
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.4e-82 311.2 387 48.1
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.4e-82 310.5 517 42.7
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 1.5e-81 307.8 513 41.7
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.0e-81 307.4 387 47.0
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 2.0e-81 307.4 375 51.2
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 2.6e-81 307.0 355 51.0
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 1.0e-80 305.1 395 48.9
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 1.0e-80 305.1 401 48.4
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.9e-80 303.5 515 44.3
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 3.8e-80 303.1 401 48.1
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 5.0e-80 302.8 413 47.2
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 6.5e-80 302.4 325 55.7
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 2.3e-77 293.9 402 47.3
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 2.2e-75 287.3 377 49.9
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.4e-74 284.6 419 46.1
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.2e-70 271.6 363 45.7
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 1.6e-70 271.2 385 46.5
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 6.7e-69 265.8 224 62.1
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.1e-66 258.5 378 43.9
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 4.4e-60 236.5 401 41.6
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 4.2e-55 219.9 319 44.5
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 4.7e-54 216.5 322 42.2
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 3.1e-50 203.8 385 37.7
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.5e-47 194.9 141 66.7
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 4.7e-46 189.9 305 39.7
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.3e-43 181.8 276 44.9
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 8.3e-43 179.1 325 38.2
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.4e-42 177.6 132 65.2
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 2.3e-37 161.0 327 37.0
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 1.2e-33 148.7 229 41.5
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 2.7e-33 147.5 191 47.1
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.7e-32 144.8 108 63.9
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.9e-26 124.8 231 39.0
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 2.4e-26 124.4 194 42.8
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 3.2e-26 124.0 194 42.8
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 3.2e-26 124.0 194 42.8
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 1.9e-23 114.8 103 58.3
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 1.9e-23 114.8 103 58.3
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 9.8e-20 102.4 86 57.0
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 1.9e-18 98.2 115 47.8
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 7.1e-18 96.3 151 46.4
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 6.2e-14 83.2 370 26.8
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 1.1e-13 82.4 174 39.1
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 3.7e-11 73.9 62 61.3
PRCOL_00000761 Prasinoderma coloniale HOM05D005450 ORTHO05D006880 6.0e-09 66.6 231 29.4
Cfa024121 Carpinus fangiana HOM05D000285 ORTHO05D001253 3.9e-08 63.9 214 26.6
Gohir.A07G055300 Gossypium hirsutum HOM05D000142 ORTHO05D001253 6.6e-08 63.2 186 27.4
unitig_0.g1413 Utricularia gibba HOM05D000069 ORTHO05D000060 8.6e-08 62.8 199 25.1
Zm00001eb266400 Zea mays HOM05D006053 ORTHO05D008381 8.6e-08 62.8 224 21.9
Gorai.001G063100 Gossypium raimondii HOM05D000142 ORTHO05D001253 1.1e-07 62.4 186 27.4
ATR0584G217 Amborella trichopoda HOM05D002097 ORTHO05D002248 1.9e-07 61.6 207 26.1
AL8G24270 Arabidopsis lyrata HOM05D000142 ORTHO05D001253 1.9e-07 61.6 186 25.8
AT5G50250 Arabidopsis thaliana HOM05D000142 ORTHO05D001253 1.9e-07 61.6 220 27.3
Sp6g12350 Schrenkiella parvula HOM05D000142 ORTHO05D001253 1.9e-07 61.6 186 26.9
Aa31LG3G6050 Aethionema arabicum HOM05D000142 ORTHO05D001253 3.3e-07 60.8 201 25.9
Potri.005G148100 Populus trichocarpa HOM05D002097 ORTHO05D002248 3.3e-07 60.8 227 26.4
TWI73G0088 Tripterygium wilfordii HOM05D000142 ORTHO05D008397 3.3e-07 60.8 206 26.2
Hma1.2p1_0032F.1_g019280 Hydrangea macrophylla HOM05D002097 ORTHO05D002248 4.3e-07 60.5 211 25.1
PGR044G0612 Punica granatum HOM05D000142 ORTHO05D001253 5.6e-07 60.1 245 25.3
HPP92_016158 Vanilla planifolia HOM05D002097 ORTHO05D002248 5.6e-07 60.1 206 25.7
Duzib084G0894 Durio zibethinus HOM05D000142 ORTHO05D001253 9.6e-07 59.3 190 25.3
Gohir.D03G102200 Gossypium hirsutum HOM05D000142 ORTHO05D001253 9.6e-07 59.3 186 26.9
arahy.Tifrunner.gnm1.ann1.M41V37 Arachis hypogaea HOM05D000142 ORTHO05D001253 1.2e-06 58.9 239 25.1
Dinv38503 Davidia involucrata HOM05D000527 ORTHO05D000559 1.2e-06 58.9 258 22.9
Gohir.A07G055600 Gossypium hirsutum HOM05D000142 ORTHO05D001253 1.2e-06 58.9 255 25.5
Sabra07G0007500 Salix brachista HOM05D002097 ORTHO05D002248 1.2e-06 58.9 214 25.7
Thecc.03G118100 Theobroma cacao HOM05D000142 ORTHO05D001253 1.2e-06 58.9 186 26.3
TAR629G0580 Trochodendron aralioides HOM05D000142 ORTHO05D001253 1.2e-06 58.9 264 22.7
Dinv11129 Davidia involucrata HOM05D000142 ORTHO05D001253 1.6e-06 58.5 230 23.9
Gohir.D07G059800 Gossypium hirsutum HOM05D000142 ORTHO05D001253 1.6e-06 58.5 255 25.5
Gorai.001G063500 Gossypium raimondii HOM05D000142 ORTHO05D001253 1.6e-06 58.5 255 25.5
Gorai.003G107700 Gossypium raimondii HOM05D000142 ORTHO05D001253 1.6e-06 58.5 186 26.9
ECA234G4106 Erigeron canadensis HOM05D000142 ORTHO05D008397 2.8e-06 57.8 202 24.8
Lsat_1_v5_gn_4_46280 Lactuca sativa HOM05D000142 ORTHO05D008397 2.8e-06 57.8 234 24.8
unitig_0.g34 Utricularia gibba HOM05D000560 ORTHO05D002248 2.8e-06 57.8 190 25.8
Migut.H00035 Erythranthe guttata HOM05D000142 ORTHO05D001253 3.6e-06 57.4 225 25.8
SGA_v2.0_scaffold7G04167 Striga asiatica HOM05D000527 ORTHO05D000559 3.6e-06 57.4 195 21.5
MSTRG.5411 Avicennia marina HOM05D004650 ORTHO05D005715 4.7e-06 57.0 266 25.6
CSS0007259 Camellia sinensis var. sinensis HOM05D002097 ORTHO05D002248 6.2e-06 56.6 212 23.6
Ciclev10027463m.g Citrus clementina HOM05D000285 ORTHO05D000241 6.2e-06 56.6 207 22.7
Lj5A133T93 Lonicera japonica HOM05D000142 ORTHO05D001253 6.2e-06 56.6 228 24.6
Manes.06G112000 Manihot esculenta HOM05D000142 ORTHO05D001253 6.2e-06 56.6 209 23.9
Medtr3g027140 Medicago truncatula HOM05D000142 ORTHO05D008397 6.2e-06 56.6 199 24.6
Potri.007G009800 Populus trichocarpa HOM05D002097 ORTHO05D002248 6.2e-06 56.6 214 25.7
Prupe.2G134600 Prunus persica HOM05D000428 ORTHO05D005608 6.2e-06 56.6 205 23.9
Aa31LG7G11080 Aethionema arabicum HOM05D000142 ORTHO05D001253 8.1e-06 56.2 190 25.8
Lalb_Chr11g0069881 Lupinus albus HOM05D000142 ORTHO05D001253 8.1e-06 56.2 190 24.7


User provided reference genes

Program Settings