Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.4e-117 426.8 307 100.0
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 9.0e-88 327.8 163 100.0
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 3.3e-66 256.1 166 75.9
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 5.7e-66 255.4 167 76.6
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 4.8e-65 252.3 176 69.9
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.4e-64 250.8 167 73.7
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 3.1e-64 249.6 176 69.3
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 6.9e-64 248.4 167 73.1
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 6.9e-64 248.4 166 74.1
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.6e-63 246.5 169 74.0
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.4e-63 246.1 166 74.1
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 3.4e-63 246.1 166 72.3
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 4.5e-63 245.7 182 68.7
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 4.5e-63 245.7 166 72.3
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 5.9e-63 245.4 158 73.4
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 5.9e-63 245.4 167 74.3
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 7.7e-63 245.0 171 71.9
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.0e-62 244.6 183 66.7
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 2.9e-62 243.0 166 73.5
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 5.0e-62 242.3 167 72.5
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 5.0e-62 242.3 175 69.1
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 8.5e-62 241.5 169 73.4
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 1.1e-61 241.1 168 69.6
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.1e-61 241.1 167 73.1
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.1e-61 241.1 170 71.2
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 1.4e-61 240.7 168 69.6
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 1.4e-61 240.7 175 69.1
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.4e-61 240.7 170 71.8
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.4e-61 240.7 149 74.5
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 1.4e-61 240.7 170 72.9
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 2.5e-61 240.0 183 65.6
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.5e-61 240.0 183 65.6
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 4.2e-61 239.2 189 66.1
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 4.2e-61 239.2 190 65.3
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 5.5e-61 238.8 188 64.9
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 5.5e-61 238.8 160 73.8
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 5.5e-61 238.8 167 71.3
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 9.4e-61 238.0 188 65.4
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.6e-60 237.3 168 69.6
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 1.6e-60 237.3 166 70.5
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.1e-60 236.9 183 64.5
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 2.7e-60 236.5 168 69.6
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 2.7e-60 236.5 170 71.8
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 2.7e-60 236.5 170 71.8
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 3.6e-60 236.1 169 69.2
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 3.6e-60 236.1 169 68.0
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 6.1e-60 235.3 169 69.2
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 6.1e-60 235.3 170 68.8
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 6.1e-60 235.3 148 74.3
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 1.0e-59 234.6 167 67.7
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.4e-59 234.2 169 68.0
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 2.3e-59 233.4 169 66.9
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.3e-59 233.4 183 64.5
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 2.3e-59 233.4 166 69.3
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 3.0e-59 233.0 169 66.9
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 3.0e-59 233.0 159 69.8
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 8.8e-59 231.5 169 66.3
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 8.8e-59 231.5 169 66.3
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 8.8e-59 231.5 154 72.7
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 1.5e-58 230.7 169 66.3
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 1.5e-58 230.7 169 66.3
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 5.7e-58 228.8 167 68.3
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 5.7e-58 228.8 156 67.3
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 7.4e-58 228.4 169 71.0
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 1.3e-57 227.6 166 67.5
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.7e-57 227.3 166 69.3
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 2.2e-57 226.9 167 66.5
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 2.2e-57 226.9 150 70.7
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 2.2e-57 226.9 183 61.7
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 2.8e-57 226.5 169 67.5
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 3.7e-57 226.1 167 65.9
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 8.2e-57 224.9 167 66.5
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 8.2e-57 224.9 168 70.2
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 1.4e-56 224.2 169 66.3
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 5.3e-56 222.2 153 69.9
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 6.9e-56 221.9 167 66.5
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 9.1e-56 221.5 169 68.0
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 9.1e-56 221.5 167 65.9
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 1.5e-55 220.7 167 65.9
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 3.4e-55 219.5 168 63.7
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 7.7e-55 218.4 166 64.5
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 1.0e-54 218.0 176 65.9
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 1.3e-54 217.6 168 64.9
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 1.7e-54 217.2 168 64.3
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 2.2e-54 216.9 169 63.9
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 5.0e-54 215.7 167 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 1.1e-53 214.5 168 66.1
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 4.2e-53 212.6 194 60.8
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.2e-52 211.1 167 63.5
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 1.2e-52 211.1 168 63.7
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.6e-52 210.7 167 63.5
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 2.7e-52 209.9 167 62.9
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 1.8e-51 207.2 167 62.3
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 3.0e-51 206.5 168 63.1
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 3.9e-51 206.1 189 58.7
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 1.1e-50 204.5 168 63.7
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.5e-50 204.1 168 62.5
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 4.4e-50 202.6 169 62.1
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 9.7e-50 201.4 169 60.4
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.3e-49 201.1 168 63.1
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 4.8e-49 199.1 162 65.4
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 3.1e-48 196.4 113 77.9
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 4.1e-48 196.1 170 61.2
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 7.0e-48 195.3 113 77.0
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 9.1e-48 194.9 149 62.4
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 1.6e-47 194.1 134 69.4
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 4.5e-47 192.6 170 58.2
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.1e-45 188.0 166 59.6
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 4.2e-45 186.0 137 67.2
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 9.4e-45 184.9 167 61.1
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.6e-44 184.1 168 58.3
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 2.1e-44 183.7 149 61.1
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 3.7e-41 172.9 176 50.6
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.4e-40 171.0 138 62.3
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 4.5e-39 166.0 143 61.5
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.0e-38 164.9 141 61.0
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.5e-37 159.1 86 80.2
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.5e-37 159.1 86 80.2
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 1.6e-36 157.5 167 52.7
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 2.0e-34 150.6 88 78.4
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 4.5e-31 139.4 170 47.6
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 5.5e-29 132.5 154 44.8
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 5.4e-24 115.9 98 59.2
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.1e-21 108.2 97 56.7
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 3.3e-21 106.7 134 51.5
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 5.6e-21 105.9 164 39.0
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 2.0e-18 97.4 56 73.2
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 1.7e-17 94.4 99 56.6
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 4.9e-17 92.8 66 60.6
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 6.2e-12 75.9 145 34.5
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 5.8e-10 69.3 78 51.3
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 1.3e-09 68.2 64 54.7
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 1.0e-06 58.5 55 65.5
Cpa.g.c30383 Carica papaya HOM05D004380 ORTHO05D005134 2.3e-06 57.4 62 56.5


User provided reference genes

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