Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019533 Vanilla planifolia HOM05D004148 ORTHO05D004709 3.0e-63 245.0 120 100.0
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 4.5e-27 124.8 115 53.0
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 5.9e-27 124.4 112 51.8
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 7.7e-27 124.0 108 52.8
CSS0002631 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.0e-26 123.6 120 52.5
CSS0019415 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.0e-26 123.6 120 52.5
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 1.3e-26 123.2 110 52.7
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 8.5e-26 120.6 118 51.7
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 1.9e-25 119.4 116 51.7
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 1.9e-25 119.4 116 48.3
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 1.9e-25 119.4 118 50.0
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 3.2e-25 118.6 107 52.3
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 4.2e-25 118.2 116 46.6
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 4.2e-25 118.2 118 47.5
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 5.5e-25 117.9 115 47.0
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 7.2e-25 117.5 118 51.7
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 9.4e-25 117.1 118 50.8
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 1.2e-24 116.7 116 46.6
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 1.6e-24 116.3 118 48.3
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 2.1e-24 115.9 114 48.2
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 3.6e-24 115.2 117 46.2
CiPaw.13G126900 Carya illinoinensis HOM05D004148 ORTHO05D004709 6.1e-24 114.4 111 50.5
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 1.8e-23 112.8 117 48.7
Os04g0566800 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 1.8e-23 112.8 120 47.5
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 2.3e-23 112.5 107 50.5
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 2.3e-23 112.5 112 48.2
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 3.0e-23 112.1 107 50.5
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 3.0e-23 112.1 107 50.5
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 4.0e-23 111.7 118 49.2
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 5.2e-23 111.3 118 44.1
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 6.7e-23 110.9 107 49.5
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 1.2e-22 110.2 113 45.1
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 1.5e-22 109.8 110 48.2
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 3.3e-22 108.6 118 45.8
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 3.3e-22 108.6 119 43.7
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 3.3e-22 108.6 115 43.5
FvH4_3g27030 Fragaria vesca HOM05D004148 ORTHO05D004709 4.4e-22 108.2 107 49.5
FAN11G3429 Fragaria x ananassa HOM05D004148 ORTHO05D004709 4.4e-22 108.2 107 49.5
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 5.7e-22 107.8 113 47.8
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 7.5e-22 107.5 110 47.3
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 9.7e-22 107.1 116 44.8
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 1.3e-21 106.7 107 47.7
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 3.7e-21 105.1 106 51.9
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 3.7e-21 105.1 114 46.5
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 8.3e-21 104.0 107 48.6
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 1.1e-20 103.6 111 46.8
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 1.1e-20 103.6 112 48.2
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 1.4e-20 103.2 114 44.7
AUR62038878 Chenopodium quinoa HOM05D000413 ORTHO05D004709 1.4e-20 103.2 107 48.6
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 1.4e-20 103.2 116 44.0
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 1.8e-20 102.8 118 42.4
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 2.4e-20 102.4 119 42.9
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 4.1e-20 101.7 116 44.0
AUR62001591 Chenopodium quinoa HOM05D004148 ORTHO05D004709 5.3e-20 101.3 107 46.7
Cpa.g.sc103.96 Carica papaya HOM05D004148 ORTHO05D004709 9.1e-20 100.5 107 43.9
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 9.1e-20 100.5 117 41.9
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 9.1e-20 100.5 119 46.2
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 9.1e-20 100.5 116 42.2
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 1.2e-19 100.1 121 43.0
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 5.9e-19 97.8 118 39.8
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 5.9e-19 97.8 107 46.7
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 1.0e-18 97.1 114 45.6
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 1.0e-18 97.1 116 41.4
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 1.3e-18 96.7 114 43.9
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 1.7e-18 96.3 107 42.1
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 2.2e-18 95.9 107 43.9
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 2.9e-18 95.5 107 43.9
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 2.9e-18 95.5 116 40.5
VMungo1215G1724 Vigna mungo HOM05D004148 ORTHO05D004709 3.8e-18 95.1 107 44.9
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 5.0e-18 94.7 116 39.7
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 6.5e-18 94.4 110 45.5
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 8.5e-18 94.0 118 44.9
CARHR108680 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.5e-17 93.2 107 44.9
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.5e-17 93.2 107 44.9
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 2.5e-17 92.4 107 44.9
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 2.5e-17 92.4 107 44.9
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 2.5e-17 92.4 107 44.9
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 3.2e-17 92.0 109 42.2
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 3.2e-17 92.0 116 38.8
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 4.2e-17 91.7 109 42.2
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 4.2e-17 91.7 116 40.5
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 5.5e-17 91.3 119 40.3
unitig_21.g20311 Utricularia gibba HOM05D004148 ORTHO05D004709 5.5e-17 91.3 117 40.2
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 3.6e-16 88.6 111 44.1
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 4.7e-16 88.2 114 39.5
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 6.1e-16 87.8 107 43.9
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 6.1e-16 87.8 114 41.2
Carub.0005s0933 Capsella rubella HOM05D004148 ORTHO05D004709 1.0e-15 87.0 107 41.1
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 1.4e-15 86.7 107 40.2
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 6.8e-15 84.3 103 43.7
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 3.4e-14 82.0 107 40.2
arahy.Tifrunner.gnm1.ann1.JMUS5L Arachis hypogaea HOM05D004148 ORTHO05D004709 5.7e-14 81.3 112 37.5
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 1.8e-12 76.3 95 43.2
Nitab4.5_0000615g0100 Nicotiana tabacum HOM05D004148 ORTHO05D004709 1.2e-11 73.6 95 36.8
TPR.G37606 Trifolium pratense HOM05D000247 ORTHO05D003114 1.5e-06 56.6 78 39.7
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 4.4e-06 55.1 65 40.0


User provided reference genes

Program Settings