Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 0.0e+00 1419.1 697 100.0
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.1e-271 939.9 654 72.3
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 3.3e-271 938.3 669 70.0
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 1.8e-269 932.6 658 71.4
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 6.9e-269 930.6 638 71.8
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 1.2e-268 929.9 638 71.8
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 2.6e-268 928.7 565 78.6
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 2.9e-267 925.2 552 81.3
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 3.8e-267 924.9 545 81.5
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 4.9e-267 924.5 604 75.7
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 5.5e-266 921.0 558 79.4
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 9.3e-266 920.2 570 78.1
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.6e-265 919.5 662 69.3
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.3e-264 915.6 650 71.1
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 3.9e-264 914.8 545 79.4
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 3.9e-264 914.8 545 79.8
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 8.7e-264 913.7 583 76.5
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 1.5e-263 912.9 570 77.5
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.9e-263 912.5 637 70.8
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 3.3e-263 911.8 602 73.9
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 3.3e-263 911.8 559 78.5
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 4.3e-263 911.4 637 70.8
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 4.3e-263 911.4 668 69.3
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 5.6e-263 911.0 577 76.4
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 9.6e-263 910.2 655 70.1
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 1.6e-262 909.4 545 78.0
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 3.7e-262 908.3 609 72.4
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 6.2e-262 907.5 647 70.9
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 8.1e-262 907.1 574 76.5
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 1.1e-261 906.7 649 70.6
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 1.8e-261 906.0 545 78.2
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 3.1e-261 905.2 545 77.6
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 3.1e-261 905.2 682 67.2
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 5.3e-261 904.4 653 69.5
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 6.9e-261 904.0 630 71.0
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 6.9e-261 904.0 647 70.0
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 9.0e-261 903.7 578 75.8
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 9.0e-261 903.7 545 78.7
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 1.2e-260 903.3 579 75.1
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.6e-260 902.1 545 78.7
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.4e-260 901.7 545 78.7
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 3.4e-260 901.7 554 78.3
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 4.5e-260 901.4 545 78.9
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 4.5e-260 901.4 657 69.4
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 5.8e-260 901.0 583 74.8
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 7.6e-260 900.6 574 74.9
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 7.6e-260 900.6 545 78.5
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 6.5e-259 897.5 583 74.3
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.4e-258 896.3 582 74.6
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.4e-258 896.3 561 76.1
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 3.2e-258 895.2 537 79.5
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 3.2e-258 895.2 575 74.3
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.2e-258 894.8 577 75.2
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 5.5e-258 894.4 575 74.4
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 9.3e-258 893.6 577 75.2
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.2e-257 893.3 536 77.6
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.2e-257 893.3 661 68.2
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.2e-257 893.3 575 74.8
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.6e-257 892.9 577 75.4
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 2.1e-257 892.5 545 79.1
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.7e-257 892.1 578 74.7
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 4.6e-257 891.3 640 69.7
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 1.0e-256 890.2 558 76.2
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.3e-256 889.8 575 74.1
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 3.0e-256 888.6 547 78.1
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 5.1e-256 887.9 545 76.5
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 5.1e-256 887.9 545 77.6
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 5.1e-256 887.9 558 76.0
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 6.7e-256 887.5 577 74.7
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 6.7e-256 887.5 566 75.1
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 1.1e-255 886.7 644 68.0
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.5e-255 886.3 547 77.9
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 1.5e-255 886.3 545 77.2
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 4.3e-255 884.8 626 69.6
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 4.3e-255 884.8 552 74.8
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 7.4e-255 884.0 554 75.8
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 1.6e-254 882.9 648 67.6
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 2.1e-254 882.5 544 75.7
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 3.7e-254 881.7 602 70.8
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 4.8e-254 881.3 545 76.5
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 6.3e-254 880.9 545 76.5
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 6.3e-254 880.9 545 77.1
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 1.1e-253 880.2 638 67.7
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 1.1e-253 880.2 544 75.6
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 1.8e-253 879.4 545 76.1
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 3.1e-253 878.6 567 75.5
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 3.1e-253 878.6 544 76.1
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 4.1e-253 878.2 579 73.6
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 1.5e-252 876.3 545 76.0
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 2.6e-252 875.5 633 68.2
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.3e-251 873.2 545 76.1
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 2.9e-251 872.1 666 66.2
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 6.5e-251 870.9 536 77.6
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.1e-250 870.2 555 75.1
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 4.2e-250 868.2 545 76.0
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 7.2e-250 867.5 575 73.4
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 9.3e-250 867.1 536 76.9
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 2.7e-249 865.5 546 74.9
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 6.1e-249 864.4 545 75.4
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 1.0e-248 863.6 517 79.1
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 4.3e-247 858.2 531 76.8
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 5.7e-247 857.8 532 76.9
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 6.9e-245 850.9 547 75.0
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 5.9e-244 847.8 547 74.8
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 2.9e-243 845.5 547 75.3
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 2.9e-243 845.5 551 74.0
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 6.5e-243 844.3 585 71.5
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 5.5e-242 841.3 519 77.8
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 1.2e-241 840.1 644 65.4
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 2.0e-239 832.8 538 74.9
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.4e-232 810.1 639 64.8
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.1e-229 800.4 578 69.4
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 2.0e-228 796.2 548 69.7
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 9.7e-223 777.3 548 71.9
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 4.8e-222 775.0 655 62.7
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.6e-220 770.0 490 76.5
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 2.0e-220 769.6 548 67.7
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 4.7e-217 758.4 550 67.6
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 5.2e-216 755.0 593 65.1
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 6.8e-216 754.6 448 80.6
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 4.1e-213 745.3 448 79.9
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.4e-208 730.3 439 79.5
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 9.5e-202 707.6 516 68.6
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 5.4e-189 665.2 451 72.3
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 5.1e-179 632.1 538 58.9
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.6e-177 627.1 476 66.6
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 4.1e-173 612.5 361 81.2
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.1e-154 551.2 542 54.4
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 5.8e-151 538.9 344 75.9
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 3.5e-148 529.6 571 49.6
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 2.7e-132 476.9 278 80.9
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 6.7e-131 472.2 278 80.6
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 1.9e-130 470.7 331 70.4
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 6.9e-128 462.2 514 50.4
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 2.6e-127 460.3 419 58.2
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 5.9e-119 432.6 271 76.4
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.9e-109 401.0 572 42.7
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 1.7e-97 361.3 288 61.8
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 3.8e-94 350.1 643 36.4
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.8e-83 314.7 179 83.8
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.8e-80 304.7 263 62.7
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 9.2e-80 302.4 184 78.8
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 3.5e-79 300.4 590 36.8
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 8.6e-78 295.8 179 77.7
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.5e-77 295.0 188 72.9
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.4e-75 288.5 513 36.8
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.7e-71 274.2 590 33.7
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 6.0e-71 273.1 167 77.8
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 7.5e-66 256.1 609 32.7
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 4.7e-60 236.9 587 31.7
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 9.9e-58 229.2 325 42.5
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.1e-56 223.8 140 76.4
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 7.8e-55 219.5 202 55.9
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.7e-46 191.8 120 79.2
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.5e-42 177.2 110 75.5
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.1e-40 172.6 100 81.0
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 4.3e-37 160.6 107 72.0
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 7.4e-37 159.8 152 56.6
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.1e-32 143.3 115 59.1
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 9.6e-29 132.9 67 88.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.8e-28 131.3 65 92.3
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 6.2e-28 130.2 104 59.6
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 9.3e-24 116.3 137 43.1
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.9e-23 113.2 106 52.8
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 9.0e-19 99.8 64 73.4
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 1.5e-18 99.0 63 68.3
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.8e-12 78.2 54 70.4
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 2.5e-08 65.1 82 48.8
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 2.3e-06 58.5 48 62.5


User provided reference genes

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