Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.1e-176 623.2 336 100.0
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 3.3e-120 435.6 315 75.9
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 4.8e-119 431.8 319 74.3
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 1.1e-118 430.6 282 80.9
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 1.1e-118 430.6 283 81.6
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 2.4e-118 429.5 321 72.3
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 2.0e-117 426.4 282 80.5
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 2.7e-117 426.0 283 79.2
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 5.9e-117 424.9 281 78.3
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 1.0e-116 424.1 282 80.9
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 1.7e-116 423.3 282 80.1
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 5.0e-116 421.8 282 80.1
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 5.0e-116 421.8 283 79.5
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 1.1e-115 420.6 282 79.1
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.9e-115 419.9 288 79.2
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.9e-115 419.9 281 79.7
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 2.5e-115 419.5 286 80.1
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 5.5e-115 418.3 281 79.4
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 5.5e-115 418.3 281 79.4
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 7.2e-115 417.9 316 73.1
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 1.2e-114 417.2 283 79.5
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 2.7e-114 416.0 281 78.6
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 3.6e-114 415.6 348 67.5
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 4.7e-114 415.2 258 84.5
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 4.7e-114 415.2 316 73.1
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 1.0e-113 414.1 258 84.9
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 1.0e-113 414.1 285 78.6
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 1.0e-113 414.1 281 77.9
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 1.4e-113 413.7 258 84.5
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 1.8e-113 413.3 358 65.1
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 2.3e-113 412.9 289 78.9
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 2.3e-113 412.9 315 72.7
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 2.3e-113 412.9 357 65.3
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 4.0e-113 412.1 281 78.6
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 4.0e-113 412.1 258 84.5
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 5.2e-113 411.8 257 84.4
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.0e-112 409.8 279 78.1
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 2.6e-112 409.5 316 71.5
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 5.7e-112 408.3 256 83.2
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 5.7e-112 408.3 258 82.9
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 7.5e-112 407.9 281 77.6
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 9.8e-112 407.5 275 78.9
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.3e-111 407.1 275 79.3
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 2.2e-111 406.4 279 77.4
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 2.2e-111 406.4 278 79.1
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 3.7e-111 405.6 295 74.2
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 4.8e-111 405.2 290 75.5
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 4.8e-111 405.2 290 75.5
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 4.8e-111 405.2 287 76.3
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 4.8e-111 405.2 280 75.4
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 8.3e-111 404.4 258 82.9
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 8.3e-111 404.4 290 75.5
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 1.1e-110 404.1 282 75.5
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 1.4e-110 403.7 259 83.0
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 1.8e-110 403.3 290 75.2
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.8e-110 403.3 261 81.6
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 2.4e-110 402.9 279 76.3
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 2.4e-110 402.9 309 70.9
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 2.4e-110 402.9 279 78.5
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 2.4e-110 402.9 283 75.6
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 2.4e-110 402.9 286 75.5
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 3.1e-110 402.5 282 76.2
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 3.1e-110 402.5 280 76.8
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 4.1e-110 402.1 280 77.1
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 7.0e-110 401.4 286 74.8
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 7.0e-110 401.4 286 74.8
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 9.1e-110 401.0 305 73.1
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.6e-109 400.2 281 77.2
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 1.6e-109 400.2 306 70.9
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 2.0e-109 399.8 280 76.8
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 2.0e-109 399.8 255 82.4
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 3.5e-109 399.1 280 76.8
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 3.5e-109 399.1 304 72.0
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 5.9e-109 398.3 304 73.0
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 7.7e-109 397.9 255 82.0
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 1.3e-108 397.1 330 68.5
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 1.7e-108 396.7 285 75.8
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 2.9e-108 396.0 287 74.9
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 3.8e-108 395.6 298 72.5
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 1.1e-107 394.0 280 75.7
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 1.9e-107 393.3 280 75.4
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 3.0e-105 386.0 295 72.2
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 4.1e-102 375.6 350 61.1
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 1.6e-101 373.6 285 71.6
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.5e-101 372.5 301 69.8
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 8.6e-100 367.9 310 66.8
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 1.5e-99 367.1 243 80.7
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 2.5e-99 366.3 246 78.9
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 5.8e-96 355.1 254 74.8
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 4.9e-95 352.1 257 72.8
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.4e-94 349.7 225 80.0
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 4.1e-94 349.0 257 73.5
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 3.0e-92 342.8 225 81.8
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 8.6e-92 341.3 252 73.0
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 7.3e-91 338.2 288 64.2
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 7.3e-91 338.2 243 75.3
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 1.2e-90 337.4 319 62.7
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 1.6e-90 337.0 288 67.7
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 1.6e-90 337.0 273 70.0
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 4.7e-90 335.5 288 67.4
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 6.2e-90 335.1 263 71.5
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 7.0e-86 321.6 298 63.1
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 5.1e-84 315.5 193 84.5
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 1.6e-82 310.5 264 66.3
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 1.1e-81 307.8 236 71.2
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 6.8e-81 305.1 250 65.2
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 9.9e-80 301.2 165 97.6
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 2.3e-76 290.0 187 81.8
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 3.0e-76 289.7 280 59.6
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 8.9e-73 278.1 245 63.3
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 1.1e-67 261.2 244 58.2
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 2.8e-66 256.5 246 57.7
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 6.9e-65 251.9 267 58.4
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 7.1e-62 241.9 286 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.1e-61 240.4 275 54.2
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 1.2e-56 224.6 227 59.9
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 1.3e-52 211.1 236 55.5
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 3.0e-52 209.9 162 70.4
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.3e-47 194.5 134 76.1
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.3e-42 177.9 133 73.7
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.2e-38 163.3 98 84.7
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 9.7e-35 151.8 142 62.0
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 5.3e-33 146.0 92 82.6
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 9.0e-33 145.2 206 51.9
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 4.5e-32 142.9 157 55.4
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 1.3e-31 141.4 157 54.8
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.1e-25 120.2 80 81.2
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 8.5e-15 85.5 92 57.6
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 2.3e-12 77.4 225 31.6
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 5.2e-12 76.3 60 66.7
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 2.9e-07 60.5 43 72.1


User provided reference genes

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