Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018137 Vanilla planifolia HOM05D001415 ORTHO05D001075 2.2e-32 141.7 73 100.0
HPP92_027005 Vanilla planifolia HOM05D001415 ORTHO05D001075 2.2e-16 88.6 74 70.3
MBI14_g04657_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 8.9e-10 66.6 56 66.1
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.2e-09 66.2 65 56.9
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 2.6e-09 65.1 65 55.4
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 3.4e-09 64.7 69 52.2
Medtr5g080260 Medicago truncatula HOM05D001415 ORTHO05D001075 4.4e-09 64.3 68 50.0
Potri.008G057800 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.4e-09 64.3 69 53.6
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 5.8e-09 63.9 64 56.2
Lsat_1_v5_gn_9_64901 Lactuca sativa HOM05D001415 ORTHO05D001075 5.8e-09 63.9 65 47.7
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 7.5e-09 63.5 38 78.9
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 7.5e-09 63.5 68 50.0
Lalb_Chr18g0053201 Lupinus albus HOM05D001415 ORTHO05D001075 7.5e-09 63.5 68 54.4
Cc02_g07600 Coffea canephora HOM05D001415 ORTHO05D001075 9.8e-09 63.2 39 71.8
Phvul.001G233300 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 9.8e-09 63.2 64 53.1
Sp4g21960 Schrenkiella parvula HOM05D001415 ORTHO05D001075 9.8e-09 63.2 57 59.6
Lalb_Chr17g0346301 Lupinus albus HOM05D001415 ORTHO05D001075 1.3e-08 62.8 70 50.0
Sc10g0001700 Simmondsia chinensis HOM05D001415 ORTHO05D001075 1.3e-08 62.8 65 50.8
CARHR134540 Cardamine hirsuta HOM05D001415 ORTHO05D001075 1.7e-08 62.4 69 49.3
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.7e-08 62.4 64 54.7
LjContig00141g0017499 Lotus japonicus HOM05D001415 ORTHO05D001075 1.7e-08 62.4 33 81.8
Rhsim01G0230800 Rhododendron simsii HOM05D001415 ORTHO05D001075 1.7e-08 62.4 40 77.5
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 1.7e-08 62.4 38 78.9
Atru.chr12.418 Acer truncatum HOM05D001415 ORTHO05D001075 2.2e-08 62.0 33 81.8
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 2.2e-08 62.0 65 50.8
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 2.2e-08 62.0 38 76.3
Lalb_Chr04g0251121 Lupinus albus HOM05D001415 ORTHO05D001075 2.2e-08 62.0 33 81.8
Potri.010G201700 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.2e-08 62.0 65 53.8
QL08p060355 Quercus lobata HOM05D001415 ORTHO05D001075 2.2e-08 62.0 33 81.8
SalBow6G6345 Salvia bowleyana HOM05D001415 ORTHO05D001075 2.2e-08 62.0 38 73.7
BcaC02g07426 Brassica carinata HOM05D001415 ORTHO05D001075 2.9e-08 61.6 68 50.0
BcaC02g12100 Brassica carinata HOM05D001415 ORTHO05D001075 2.9e-08 61.6 62 53.2
A05p06700 Brassica napus HOM05D001415 ORTHO05D001075 2.9e-08 61.6 62 53.2
C04p07830 Brassica napus HOM05D001415 ORTHO05D001075 2.9e-08 61.6 62 53.2
C04p67490 Brassica napus HOM05D001415 ORTHO05D001075 2.9e-08 61.6 68 50.0
BolC4t22402H Brassica oleracea HOM05D001415 ORTHO05D001075 2.9e-08 61.6 62 53.2
BraA05t19637Z Brassica rapa HOM05D001415 ORTHO05D001075 2.9e-08 61.6 62 53.2
CAN.G1366.20 Capsicum annuum HOM05D001415 ORTHO05D001075 2.9e-08 61.6 33 78.8
Migut.F01456 Erythranthe guttata HOM05D001415 ORTHO05D001075 2.9e-08 61.6 69 49.3
Lalb_Chr15g0084661 Lupinus albus HOM05D001415 ORTHO05D001075 2.9e-08 61.6 33 81.8
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 2.9e-08 61.6 65 53.8
AL4G37150 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 3.7e-08 61.2 66 48.5
AT2G39705 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 3.7e-08 61.2 66 48.5
Carub.0004s2175 Capsella rubella HOM05D001415 ORTHO05D001075 3.7e-08 61.2 66 48.5
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 3.7e-08 61.2 65 55.4
Ciclev10033183m.g Citrus clementina HOM05D001415 ORTHO05D001075 3.7e-08 61.2 33 78.8
Glyma.02G248900 Glycine max HOM05D001415 ORTHO05D001075 3.7e-08 61.2 66 50.0
Glyma.11G220000 Glycine max HOM05D001415 ORTHO05D001075 3.7e-08 61.2 33 81.8
Glyma.18G037400 Glycine max HOM05D001415 ORTHO05D001075 3.7e-08 61.2 33 81.8
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 3.7e-08 61.2 65 50.8
Oeu012944.2 Olea europaea HOM05D001415 ORTHO05D001075 3.7e-08 61.2 38 73.7
Sabra08G0042400 Salix brachista HOM05D001415 ORTHO05D001075 3.7e-08 61.2 63 55.6
ECA238G4842 Erigeron canadensis HOM05D001415 ORTHO05D001075 4.9e-08 60.8 33 78.8
Thhalv10017695m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 4.9e-08 60.8 52 55.8
Gohir.A10G220900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.9e-08 60.8 33 81.8
Gohir.A13G018500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.9e-08 60.8 33 78.8
Gohir.D10G233100 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.9e-08 60.8 33 81.8
Gohir.D13G019500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.9e-08 60.8 38 73.7
Gorai.011G266700 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.9e-08 60.8 33 81.8
Gorai.013G021600 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.9e-08 60.8 38 73.7
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 4.9e-08 60.8 39 69.2
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 4.9e-08 60.8 38 73.7
THA.LOC104810035 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 4.9e-08 60.8 58 50.0
THA.LOC109117081 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 4.9e-08 60.8 52 55.8
Thecc.10G036800 Theobroma cacao HOM05D001415 ORTHO05D001075 4.9e-08 60.8 33 78.8
BcaB02g09096 Brassica carinata HOM05D001415 ORTHO05D001075 6.4e-08 60.5 52 53.8
Duzib128G0356 Durio zibethinus HOM05D001415 ORTHO05D001075 6.4e-08 60.5 33 75.8
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 6.4e-08 60.5 33 78.8
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 6.4e-08 60.5 33 78.8
HanXRQChr10g0312871 Helianthus annuus HOM05D001415 ORTHO05D001075 6.4e-08 60.5 33 75.8
MBI05_g29691_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 6.4e-08 60.5 38 73.7
Phvul.008G191701 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 6.4e-08 60.5 38 73.7
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 6.4e-08 60.5 33 78.8
PGSC0003DMG400006357 Solanum tuberosum HOM05D001415 ORTHO05D001075 6.4e-08 60.5 33 75.8
TPR.G15833 Trifolium pratense HOM05D001415 ORTHO05D001075 6.4e-08 60.5 33 78.8
TPR.G3500 Trifolium pratense HOM05D001415 ORTHO05D001075 6.4e-08 60.5 68 51.5
BolC4t28246H Brassica oleracea HOM05D001415 ORTHO05D001075 8.3e-08 60.1 52 55.8
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 8.3e-08 60.1 38 73.7
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 8.3e-08 60.1 38 73.7
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 8.3e-08 60.1 38 73.7
Glyma.14G067500 Glycine max HOM05D001415 ORTHO05D001075 8.3e-08 60.1 68 52.9
HanXRQChr07g0201511 Helianthus annuus HOM05D001415 ORTHO05D001075 8.3e-08 60.1 67 41.8
Hma1.2p1_1480F.1_g286050 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 8.3e-08 60.1 65 47.7
Rhsim03G0133500 Rhododendron simsii HOM05D001415 ORTHO05D001075 8.3e-08 60.1 69 46.4
A04p30340 Brassica napus HOM05D001415 ORTHO05D001075 1.1e-07 59.7 52 55.8
BraA04t18474Z Brassica rapa HOM05D001415 ORTHO05D001075 1.1e-07 59.7 52 55.8
Hma1.2p1_0998F.1_g246100 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 1.1e-07 59.7 33 75.8
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 1.1e-07 59.7 66 48.5
HPP92_012600 Vanilla planifolia HOM05D001415 ORTHO05D001075 1.1e-07 59.7 70 52.9
CiPaw.01G289500 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.4e-07 59.3 65 52.3
Medtr3g067980 Medicago truncatula HOM05D001415 ORTHO05D001075 1.4e-07 59.3 33 75.8
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 1.4e-07 59.3 33 75.8
Dinv26032 Davidia involucrata HOM05D000371 ORTHO05D008019 1.9e-07 58.9 70 45.7
Lalb_Chr10g0104651 Lupinus albus HOM05D001415 ORTHO05D001075 1.9e-07 58.9 31 83.9
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 2.4e-07 58.5 65 52.3
Eucgr.J01236 Eucalyptus grandis HOM05D001415 ORTHO05D001075 2.4e-07 58.5 33 75.8
Glyma.20G182300 Glycine max HOM05D001415 ORTHO05D001075 2.4e-07 58.5 32 78.1
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.4e-07 58.5 32 78.1
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 2.4e-07 58.5 66 48.5
DCAR_027603 Daucus carota HOM05D001415 ORTHO05D001075 3.2e-07 58.2 73 47.9
Phvul.007G235700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 3.2e-07 58.2 34 73.5
CiPaw.02G185400 Carya illinoinensis HOM05D001415 ORTHO05D001075 4.1e-07 57.8 65 50.8
Duzib114G0513 Durio zibethinus HOM05D001415 ORTHO05D001075 4.1e-07 57.8 32 78.1
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 4.1e-07 57.8 33 72.7
Phvul.007G098500 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 4.1e-07 57.8 31 77.4
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 4.1e-07 57.8 33 72.7
SalBow1G2982 Salvia bowleyana HOM05D000007 ORTHO05D000521 4.1e-07 57.8 38 65.8
BcaB06g29109 Brassica carinata HOM05D001415 ORTHO05D001075 5.4e-07 57.4 32 78.1
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.4e-07 57.4 32 75.0
Zm00001eb367930 Zea mays HOM05D001415 ORTHO05D001075 5.4e-07 57.4 32 78.1
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 7.0e-07 57.0 32 75.0
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 7.0e-07 57.0 32 75.0
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 7.0e-07 57.0 32 75.0
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 7.0e-07 57.0 32 75.0
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 7.0e-07 57.0 32 75.0
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.0e-07 57.0 32 75.0
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.0e-07 57.0 32 75.0
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 7.0e-07 57.0 32 75.0
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 7.0e-07 57.0 65 46.2
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 7.0e-07 57.0 32 78.1
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 7.0e-07 57.0 32 75.0
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 9.2e-07 56.6 32 75.0
HanXRQChr14g0454501 Helianthus annuus HOM05D001415 ORTHO05D001075 9.2e-07 56.6 70 41.4
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 9.2e-07 56.6 54 51.9
HPP92_001492 Vanilla planifolia HOM05D001415 ORTHO05D001075 9.2e-07 56.6 62 46.8
HPP92_006626 Vanilla planifolia HOM05D001415 ORTHO05D001075 9.2e-07 56.6 54 51.9
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 1.2e-06 56.2 40 65.0
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 1.2e-06 56.2 40 60.0
Os03g0272900 Oryza sativa ssp. japonica HOM05D001415 ORTHO05D001075 1.2e-06 56.2 63 47.6
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-06 55.8 32 75.0
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-06 55.8 32 75.0
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.6e-06 55.8 32 75.0
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.6e-06 55.8 51 56.9
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 2.0e-06 55.5 30 76.7
CANSAT54G2158 Cannabis sativa HOM05D001415 ORTHO05D001075 2.0e-06 55.5 29 79.3
CANSAT56G2970 Cannabis sativa HOM05D001415 ORTHO05D001075 2.0e-06 55.5 32 71.9
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 2.0e-06 55.5 32 71.9
Duzib150G0909 Durio zibethinus HOM05D001415 ORTHO05D001075 2.0e-06 55.5 30 76.7
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.0e-06 55.5 32 71.9
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.0e-06 55.5 32 71.9
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 2.0e-06 55.5 32 71.9
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 2.0e-06 55.5 30 76.7
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 2.0e-06 55.5 32 71.9
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 2.0e-06 55.5 39 66.7
CiPaw.02G172500 Carya illinoinensis HOM05D001415 ORTHO05D001075 2.7e-06 55.1 32 68.8
COL.COLO4_18559 Corchorus olitorius HOM05D001415 ORTHO05D001075 2.7e-06 55.1 30 76.7
Glyma.10G208500 Glycine max HOM05D001415 ORTHO05D001075 2.7e-06 55.1 32 75.0
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 2.7e-06 55.1 32 75.0
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 2.7e-06 55.1 32 71.9
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 2.7e-06 55.1 32 71.9
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 2.7e-06 55.1 32 71.9
Os12g0573600 Oryza sativa ssp. japonica HOM05D001415 ORTHO05D001075 2.7e-06 55.1 70 47.1
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.7e-06 55.1 32 71.9
RcHm_v2.0_Chr5g0065921 Rosa chinensis HOM05D001415 ORTHO05D001075 2.7e-06 55.1 32 71.9
CiPaw.01G269600 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.5e-06 54.7 32 68.8
MELO3C025900.2 Cucumis melo HOM05D001415 ORTHO05D001075 3.5e-06 54.7 32 71.9
Migut.F01961 Erythranthe guttata HOM05D001415 ORTHO05D001075 3.5e-06 54.7 32 71.9
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 3.5e-06 54.7 30 76.7
PSO274G0001 Papaver somniferum HOM05D001415 ORTHO05D001075 3.5e-06 54.7 31 71.0
PSO513G0025 Papaver somniferum HOM05D001415 ORTHO05D001075 3.5e-06 54.7 31 71.0
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 3.5e-06 54.7 40 65.0
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 3.5e-06 54.7 32 71.9
AT3G55515 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 4.6e-06 54.3 70 44.3
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 4.6e-06 54.3 32 65.6
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.6e-06 54.3 32 68.8
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.6e-06 54.3 32 68.8
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.6e-06 54.3 32 68.8
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 4.6e-06 54.3 40 57.5
Phvul.007G098400 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 4.6e-06 54.3 32 71.9
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 6.0e-06 53.9 32 68.8
DCAR_020825 Daucus carota HOM05D001415 ORTHO05D001075 6.0e-06 53.9 32 65.6
Glyma.10G208400 Glycine max HOM05D001415 ORTHO05D001075 6.0e-06 53.9 32 71.9
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.0e-06 53.9 40 60.0
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.0e-06 53.9 40 60.0
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 6.0e-06 53.9 40 60.0
AL5G36670 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 7.8e-06 53.5 31 74.2
Carub.0005s2224 Capsella rubella HOM05D001415 ORTHO05D001075 7.8e-06 53.5 31 74.2
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 7.8e-06 53.5 31 67.7
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 7.8e-06 53.5 31 67.7
Lalb_Chr02g0152101 Lupinus albus HOM05D001415 ORTHO05D001075 7.8e-06 53.5 32 65.6
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 7.8e-06 53.5 32 68.8
Os01g0844200 Oryza sativa ssp. japonica HOM05D001415 ORTHO05D001075 7.8e-06 53.5 56 53.6
unitig_8.g4710 Utricularia gibba HOM05D001415 ORTHO05D001075 7.8e-06 53.5 32 65.6


User provided reference genes

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