Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017902 Vanilla planifolia HOM05D002621 ORTHO05D002929 1.4e-54 216.1 116 100.0
HPP92_017900 Vanilla planifolia HOM05D002621 ORTHO05D002929 4.2e-46 188.0 112 93.8
Thhalv10012986m.g Eutrema salsugineum HOM05D002621 ORTHO05D002929 1.1e-22 110.2 110 59.1
Carub.0008s2035 Capsella rubella HOM05D002621 ORTHO05D002929 1.5e-22 109.8 109 57.8
Zm00001eb291100 Zea mays HOM05D002621 ORTHO05D002929 1.9e-22 109.4 114 58.8
AL8G36230 Arabidopsis lyrata HOM05D002621 ORTHO05D002929 2.5e-22 109.0 109 57.8
Aa31sc23G250 Aethionema arabicum HOM05D002621 ORTHO05D002929 1.6e-21 106.3 109 56.9
AT5G59710 Arabidopsis thaliana HOM05D002621 ORTHO05D002929 1.6e-21 106.3 108 57.4
Sp6g21380 Schrenkiella parvula HOM05D002621 ORTHO05D002929 1.6e-21 106.3 109 56.0
BcaC03g13991 Brassica carinata HOM05D002621 ORTHO05D002929 2.7e-21 105.5 108 53.7
BolC2t07327H Brassica oleracea HOM05D002621 ORTHO05D002929 2.7e-21 105.5 108 53.7
A02p06940 Brassica napus HOM05D002621 ORTHO05D002929 8.0e-21 104.0 108 54.6
BraA02t05774Z Brassica rapa HOM05D002621 ORTHO05D002929 8.0e-21 104.0 108 54.6
QL01p034369 Quercus lobata HOM05D002621 ORTHO05D002929 8.0e-21 104.0 111 58.6
Sed0008508 Sechium edule HOM05D002621 ORTHO05D002929 1.4e-20 103.2 110 58.2
ClCG02G020610 Citrullus lanatus HOM05D002621 ORTHO05D002929 2.3e-20 102.4 111 57.7
Thecc.09G330500 Theobroma cacao HOM05D002621 ORTHO05D002929 4.0e-20 101.7 111 57.7
C02p12240 Brassica napus HOM05D002621 ORTHO05D002929 6.8e-20 100.9 109 53.2
FAN21G0358 Fragaria x ananassa HOM05D002621 ORTHO05D002929 8.8e-20 100.5 111 56.8
FAN25G3681 Fragaria x ananassa HOM05D002621 ORTHO05D002929 8.8e-20 100.5 111 56.8
MD03G1103300 Malus domestica HOM05D002621 ORTHO05D002929 8.8e-20 100.5 111 57.7
BcaB05g22533 Brassica carinata HOM05D002621 ORTHO05D002929 1.2e-19 100.1 108 53.7
FvH4_3g34620 Fragaria vesca HOM05D002621 ORTHO05D002929 1.2e-19 100.1 111 55.9
FAN11G3854 Fragaria x ananassa HOM05D002621 ORTHO05D002929 1.2e-19 100.1 111 55.9
ClCG00G005110 Citrullus lanatus HOM05D002621 ORTHO05D002929 1.5e-19 99.8 111 56.8
ClCG02G012520 Citrullus lanatus HOM05D002621 ORTHO05D002929 1.5e-19 99.8 111 56.8
Prupe.6G087300 Prunus persica HOM05D002621 ORTHO05D002929 1.5e-19 99.8 111 56.8
CsaV3_6G022060 Cucumis sativus L. HOM05D002621 ORTHO05D002929 2.0e-19 99.4 111 55.9
Lalb_Chr24g0394301 Lupinus albus HOM05D002621 ORTHO05D002929 2.0e-19 99.4 113 53.1
Gorai.009G102700 Gossypium raimondii HOM05D002621 ORTHO05D002929 2.6e-19 99.0 111 56.8
CANSAT54G1787 Cannabis sativa HOM05D002621 ORTHO05D002929 3.4e-19 98.6 110 56.4
Duzib150G0177 Durio zibethinus HOM05D002621 ORTHO05D002929 3.4e-19 98.6 111 55.9
Gorai.013G265700 Gossypium raimondii HOM05D002621 ORTHO05D002929 3.4e-19 98.6 111 56.8
Nn2g10543 Nelumbo nucifera HOM05D002621 ORTHO05D002929 3.4e-19 98.6 115 55.7
Potri.001G349400 Populus trichocarpa HOM05D002621 ORTHO05D002929 3.4e-19 98.6 111 55.9
Sed0007799 Sechium edule HOM05D002621 ORTHO05D002929 3.4e-19 98.6 111 56.8
COL.COLO4_18423 Corchorus olitorius HOM05D002621 ORTHO05D002929 4.4e-19 98.2 119 54.6
Duzib170G0309 Durio zibethinus HOM05D002621 ORTHO05D002929 4.4e-19 98.2 111 55.9
FAN16G3650 Fragaria x ananassa HOM05D002621 ORTHO05D002929 4.4e-19 98.2 111 55.9
Gohir.A13G229400 Gossypium hirsutum HOM05D002621 ORTHO05D002929 4.4e-19 98.2 111 56.8
RcHm_v2.0_Chr5g0062331 Rosa chinensis HOM05D002621 ORTHO05D002929 4.4e-19 98.2 111 55.9
vmacro15765 Vaccinium macrocarpon HOM05D002621 ORTHO05D002929 4.4e-19 98.2 119 55.5
Glyma.12G074700 Glycine max HOM05D002621 ORTHO05D002929 5.7e-19 97.8 116 56.0
Medtr2g096180 Medicago truncatula HOM05D002621 ORTHO05D002929 5.7e-19 97.8 110 58.2
PGR102G1233 Punica granatum HOM05D002621 ORTHO05D002929 5.7e-19 97.8 111 55.0
Manes.04G029100 Manihot esculenta HOM05D002621 ORTHO05D002929 7.5e-19 97.4 111 56.8
Sabra16G0228800 Salix brachista HOM05D002621 ORTHO05D002929 7.5e-19 97.4 111 55.9
THA.LOC104810794 Tarenaya hassleriana HOM05D002621 ORTHO05D002929 7.5e-19 97.4 118 53.4
Cc01_g12100 Coffea canephora HOM05D002621 ORTHO05D002929 1.3e-18 96.7 111 56.8
Duzib168G1772 Durio zibethinus HOM05D002621 ORTHO05D002929 1.3e-18 96.7 111 55.0
Cpa.g.sc252.5 Carica papaya HOM05D002621 ORTHO05D002929 1.7e-18 96.3 111 55.0
Atru.chr3.3794 Acer truncatum HOM05D002621 ORTHO05D002929 2.2e-18 95.9 111 54.1
Lj3g0000216 Lotus japonicus HOM05D002621 ORTHO05D002929 2.8e-18 95.5 110 54.5
Glyma.11G145854 Glycine max HOM05D002621 ORTHO05D002929 3.7e-18 95.1 118 53.4
Gorai.004G003300 Gossypium raimondii HOM05D002621 ORTHO05D002929 3.7e-18 95.1 111 55.9
MD11G1117100 Malus domestica HOM05D002621 ORTHO05D002929 3.7e-18 95.1 119 52.1
VMungo1127G1223 Vigna mungo HOM05D002621 ORTHO05D002929 3.7e-18 95.1 110 56.4
CAN.G394.10 Capsicum annuum HOM05D002621 ORTHO05D002929 4.8e-18 94.7 111 55.0
Manes.11G136600 Manihot esculenta HOM05D002621 ORTHO05D002929 4.8e-18 94.7 111 55.9
Ciclev10027964m.g Citrus clementina HOM05D002621 ORTHO05D002929 6.3e-18 94.4 112 57.1
Ca_01358_v3 Cicer arietinum L. HOM05D002621 ORTHO05D002929 8.3e-18 94.0 110 57.3
Rhsim02G0099900 Rhododendron simsii HOM05D002621 ORTHO05D002929 8.3e-18 94.0 120 55.0
Phvul.011G069400 Phaseolus vulgaris HOM05D002621 ORTHO05D002929 1.1e-17 93.6 110 55.5
Sabra17G0062900 Salix brachista HOM05D002621 ORTHO05D002929 1.8e-17 92.8 111 54.1
PGSC0003DMG400030306 Solanum tuberosum HOM05D002621 ORTHO05D002929 2.4e-17 92.4 111 53.2
CAN.G755.18 Capsicum annuum HOM05D002621 ORTHO05D002929 3.1e-17 92.0 111 53.2
Actinidia07080 Actinidia chinensis HOM05D002621 ORTHO05D002929 4.1e-17 91.7 111 57.7
Solyc11g072940.2 Solanum lycopersicum HOM05D002621 ORTHO05D002929 4.1e-17 91.7 118 50.8
Sopen11g030600 Solanum pennellii HOM05D002621 ORTHO05D002929 4.1e-17 91.7 118 50.8
Nitab4.5_0002684g0140 Nicotiana tabacum HOM05D002621 ORTHO05D002929 5.3e-17 91.3 111 52.3
Potri.017G065900 Populus trichocarpa HOM05D002621 ORTHO05D002929 5.3e-17 91.3 111 53.2
Oeu012680.1 Olea europaea HOM05D002621 ORTHO05D002929 7.0e-17 90.9 119 52.9
Peaxi162Scf00986g00114 Petunia axillaris HOM05D002621 ORTHO05D002929 7.0e-17 90.9 111 53.2
arahy.Tifrunner.gnm1.ann1.B07III Arachis hypogaea HOM05D002621 ORTHO05D002929 9.1e-17 90.5 117 50.4
arahy.Tifrunner.gnm1.ann1.K398AB Arachis hypogaea HOM05D002621 ORTHO05D002929 9.1e-17 90.5 117 50.4
BcaC01g06500 Brassica carinata HOM05D002621 ORTHO05D002929 9.1e-17 90.5 113 51.3
Dinv32863 Davidia involucrata HOM05D002621 ORTHO05D002929 9.1e-17 90.5 111 54.1
Nitab4.5_0007030g0020 Nicotiana tabacum HOM05D002621 ORTHO05D002929 9.1e-17 90.5 111 52.3
Hund29758 Selenicereus undatus HOM05D002621 ORTHO05D002929 1.2e-16 90.1 119 47.9
SGA_v2.0_scaffold61G21236 Striga asiatica HOM05D002621 ORTHO05D002929 1.2e-16 90.1 119 53.8
TPR.G11503 Trifolium pratense HOM05D002621 ORTHO05D002929 1.6e-16 89.7 110 56.4
DCAR_005297 Daucus carota HOM05D002621 ORTHO05D002929 2.0e-16 89.4 119 50.4
HanXRQChr05g0134101 Helianthus annuus HOM05D002621 ORTHO05D002929 2.0e-16 89.4 118 50.0
Peaxi162Scf00411g00719 Petunia axillaris HOM05D002621 ORTHO05D002929 2.0e-16 89.4 111 53.2
Sopen06g031990 Solanum pennellii HOM05D002621 ORTHO05D002929 2.0e-16 89.4 111 52.3
C03p13350 Brassica napus HOM05D002621 ORTHO05D002929 2.7e-16 89.0 109 52.3
BolC3t13797H Brassica oleracea HOM05D002621 ORTHO05D002929 2.7e-16 89.0 109 52.3
A03p11540 Brassica napus HOM05D002621 ORTHO05D002929 3.5e-16 88.6 109 51.4
BraA03t10467Z Brassica rapa HOM05D002621 ORTHO05D002929 3.5e-16 88.6 109 51.4
AUR62019346 Chenopodium quinoa HOM05D002621 ORTHO05D002929 3.5e-16 88.6 120 49.2
Hma1.2p1_0035F.1_g021830 Hydrangea macrophylla HOM05D002621 ORTHO05D002929 3.5e-16 88.6 110 51.8
Solyc06g075590.4 Solanum lycopersicum HOM05D002621 ORTHO05D002929 4.5e-16 88.2 111 51.4
MSTRG.18609 Avicennia marina HOM05D002621 ORTHO05D002929 5.9e-16 87.8 119 52.9
Haze_24004 Corylus avellana HOM05D002621 ORTHO05D002929 5.9e-16 87.8 111 54.1
Lj2C1048T3 Lonicera japonica HOM05D002621 ORTHO05D002929 5.9e-16 87.8 120 52.5
SalBow3G3367 Salvia bowleyana HOM05D002621 ORTHO05D002929 5.9e-16 87.8 119 52.9
CARHR273280 Cardamine hirsuta HOM05D002621 ORTHO05D002929 7.7e-16 87.4 107 54.2
Oeu017385.1 Olea europaea HOM05D002621 ORTHO05D002929 7.7e-16 87.4 119 51.3
Eucgr.J02100 Eucalyptus grandis HOM05D002621 ORTHO05D002929 1.3e-15 86.7 111 51.4
PGSC0003DMG402015527 Solanum tuberosum HOM05D002621 ORTHO05D002929 1.3e-15 86.7 119 50.4
AUR62006142 Chenopodium quinoa HOM05D002621 ORTHO05D002929 2.2e-15 85.9 120 47.5
Lj3g0019780 Lotus japonicus HOM05D002621 ORTHO05D002929 2.9e-15 85.5 110 52.7
Hund29757 Selenicereus undatus HOM05D002621 ORTHO05D002929 2.9e-15 85.5 108 48.1
Ah.07g205970 Amaranthus hybridus HOM05D002621 ORTHO05D002929 3.8e-15 85.1 120 48.3
ECA247G4039 Erigeron canadensis HOM05D002621 ORTHO05D002929 3.8e-15 85.1 116 52.6
Migut.D02149 Erythranthe guttata HOM05D002621 ORTHO05D002929 3.8e-15 85.1 119 50.4
Hund11683 Selenicereus undatus HOM05D002621 ORTHO05D002929 1.1e-14 83.6 120 46.7
Medtr4g061843 Medicago truncatula HOM05D002621 ORTHO05D002929 1.9e-14 82.8 110 51.8
Actinidia37262 Actinidia chinensis HOM05D002621 ORTHO05D002929 2.5e-14 82.4 111 54.1
THA.LOC104826337 Tarenaya hassleriana HOM05D002621 ORTHO05D002929 2.5e-14 82.4 114 50.9
Sc01g0009890 Simmondsia chinensis HOM05D002621 ORTHO05D002929 3.2e-14 82.0 119 47.1
EL10Ac3g05338 Beta vulgaris HOM05D002621 ORTHO05D002929 4.2e-14 81.6 120 47.5
TAR369G0172 Trochodendron aralioides HOM05D002621 ORTHO05D002929 4.2e-14 81.6 111 52.3
HanXRQChr05g0134111 Helianthus annuus HOM05D002621 ORTHO05D002929 5.5e-14 81.3 118 47.5
Hma1.2p1_0746F.1_g212350 Hydrangea macrophylla HOM05D002621 ORTHO05D002929 7.2e-14 80.9 111 49.5
Hma1.2p1_2771F.1_g328220 Hydrangea macrophylla HOM05D002621 ORTHO05D002929 7.2e-14 80.9 111 49.5
Psat7g220880 Pisum sativum HOM05D002621 ORTHO05D002929 7.2e-14 80.9 118 49.2
TPR.G2973 Trifolium pratense HOM05D002621 ORTHO05D002929 9.4e-14 80.5 118 50.0
ECA236G0810 Erigeron canadensis HOM05D002621 ORTHO05D002929 2.7e-13 79.0 111 48.6
Nitab4.5_0000270g0280 Nicotiana tabacum HOM05D002621 ORTHO05D002929 3.6e-13 78.6 110 48.2
Os02g0782200 Oryza sativa ssp. japonica HOM05D002621 ORTHO05D002929 3.6e-13 78.6 98 52.0
Lsat_1_v5_gn_9_21580 Lactuca sativa HOM05D002621 ORTHO05D002929 4.7e-13 78.2 114 46.5
Os03g0736000 Oryza sativa ssp. japonica HOM05D002621 ORTHO05D002929 8.0e-13 77.4 97 49.5
AUR62017826 Chenopodium quinoa HOM05D002621 ORTHO05D002929 1.4e-12 76.6 111 47.7
AUR62003514 Chenopodium quinoa HOM05D002621 ORTHO05D002929 5.2e-12 74.7 111 46.8
CSS0004678 Camellia sinensis var. sinensis HOM05D002621 ORTHO05D002929 1.5e-11 73.2 110 48.2
Actinidia03771 Actinidia chinensis HOM05D002621 ORTHO05D002929 5.7e-11 71.2 73 56.2
Zm00001eb193030 Zea mays HOM05D002621 ORTHO05D002929 1.3e-10 70.1 113 46.0
Nitab4.5_0000182g0090 Nicotiana tabacum HOM05D002621 ORTHO05D002929 3.7e-10 68.6 110 44.5
HPP92_015608 Vanilla planifolia HOM05D002621 ORTHO05D002929 3.7e-10 68.6 78 52.6
CDE04G2661 Ceratophyllum demersum HOM05D002621 ORTHO05D002929 1.9e-06 56.2 110 40.0
GSVIVG01025059001 Vitis vinifera HOM05D002621 ORTHO05D002929 2.5e-06 55.8 90 50.0
HanXRQChr08g0228211 Helianthus annuus HOM05D002621 ORTHO05D002929 4.2e-06 55.1 119 42.9
Gohir.D05G098901 Gossypium hirsutum HOM05D002621 ORTHO05D002929 5.5e-06 54.7 78 51.3


User provided reference genes

Program Settings