Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.0e-249 866.3 440 100.0
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.8e-169 599.7 422 70.1
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 6.2e-167 591.3 422 69.2
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.1e-166 589.0 422 69.0
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 9.0e-166 587.4 422 69.0
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.3e-164 583.6 422 69.0
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 3.8e-164 582.0 420 68.3
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 7.1e-163 577.8 422 65.6
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.2e-162 577.0 422 67.3
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 7.9e-162 574.3 422 67.3
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 5.1e-161 571.6 423 67.8
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.1e-160 570.5 425 66.1
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 1.1e-160 570.5 422 66.6
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 3.3e-160 568.9 422 66.1
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 5.7e-160 568.2 420 68.1
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 7.4e-160 567.8 422 66.6
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.7e-160 567.4 422 66.6
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.2e-159 566.2 429 65.5
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 2.8e-159 565.8 422 65.4
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.4e-158 563.5 423 65.2
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.4e-158 563.5 427 64.4
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 1.8e-158 563.1 419 67.1
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 9.0e-158 560.8 422 67.3
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 1.5e-157 560.1 422 65.4
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.5e-157 560.1 421 65.8
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.5e-157 560.1 422 65.6
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 2.0e-157 559.7 422 65.6
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 2.0e-157 559.7 422 65.6
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 2.6e-157 559.3 422 66.4
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 3.4e-157 558.9 422 65.9
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.3e-156 557.0 422 65.2
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.7e-156 556.6 422 64.9
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.7e-156 556.6 422 66.6
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.4e-155 553.5 422 64.5
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.4e-155 553.5 422 66.1
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 2.5e-155 552.7 422 64.7
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 3.2e-155 552.4 422 66.8
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.2e-155 552.4 422 64.5
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 7.2e-155 551.2 423 66.7
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.2e-154 550.4 426 63.8
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.6e-154 550.1 422 65.4
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 1.6e-154 550.1 422 65.6
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.1e-154 549.7 422 64.2
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.1e-154 549.7 422 65.4
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.6e-154 548.9 422 63.7
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 4.6e-154 548.5 419 64.2
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 6.1e-154 548.1 422 64.2
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.1e-154 548.1 422 64.0
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 6.1e-154 548.1 422 65.2
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.4e-153 547.0 422 63.5
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.4e-153 547.0 420 65.5
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.8e-153 546.6 419 65.2
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.8e-153 546.6 424 64.4
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 2.3e-153 546.2 420 64.3
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 2.3e-153 546.2 422 65.9
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.3e-153 546.2 419 65.2
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 2.0e-152 543.1 424 63.2
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 4.3e-152 542.0 422 65.2
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.3e-152 542.0 419 64.7
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 5.3e-150 535.0 420 65.2
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.2e-149 533.9 422 63.5
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 3.4e-149 532.3 431 61.9
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 3.4e-149 532.3 422 63.0
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 4.5e-149 531.9 423 63.1
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.7e-148 530.0 421 62.2
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 8.5e-148 527.7 422 62.6
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 1.4e-147 526.9 423 61.7
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.9e-147 526.6 422 62.6
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.6e-146 523.5 424 62.0
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 3.6e-146 522.3 424 61.8
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 6.1e-146 521.5 421 62.5
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 2.3e-145 519.6 423 63.1
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 5.1e-145 518.5 456 61.0
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.1e-144 517.3 461 58.8
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 2.0e-144 516.5 421 63.7
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 4.4e-144 515.4 424 61.3
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.7e-143 513.5 423 61.2
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 2.2e-143 513.1 455 58.7
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 3.7e-143 512.3 403 61.8
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.1e-142 510.8 422 61.8
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.8e-142 510.0 428 61.4
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 4.1e-142 508.8 421 61.8
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.2e-141 507.3 421 61.8
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 2.6e-141 506.1 422 60.7
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 4.5e-141 505.4 422 62.8
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 1.7e-140 503.4 423 61.2
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 3.8e-140 502.3 419 62.1
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 6.5e-140 501.5 358 67.0
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.9e-139 500.0 424 59.9
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.6e-138 496.9 383 66.1
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 6.7e-137 491.5 423 59.8
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 6.7e-137 491.5 423 59.3
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 2.0e-136 490.0 423 57.0
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 3.7e-135 485.7 423 58.6
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.1e-134 484.2 423 58.2
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.1e-134 484.2 423 58.2
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 2.4e-134 483.0 420 58.6
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 9.1e-134 481.1 426 57.0
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 2.6e-133 479.6 444 56.8
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 7.7e-133 478.0 424 58.0
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.0e-132 477.6 424 58.0
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.0e-132 477.6 424 58.0
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 1.0e-132 477.6 423 58.2
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 2.2e-132 476.5 450 55.6
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 6.5e-132 474.9 423 57.4
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.9e-131 473.4 422 57.8
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.9e-131 473.4 426 56.8
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 4.2e-131 472.2 423 57.0
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.2e-130 470.7 423 57.4
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 2.7e-130 469.5 423 56.7
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 4.7e-130 468.8 423 57.2
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 1.4e-129 467.2 423 56.5
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 1.4e-129 467.2 423 56.5
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.8e-129 466.8 423 56.7
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 3.0e-129 466.1 423 56.7
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 3.0e-129 466.1 437 57.7
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.5e-128 463.8 422 59.0
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 5.7e-128 461.8 424 56.4
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.8e-126 456.8 420 56.0
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.8e-126 456.8 423 54.8
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 9.1e-126 454.5 321 70.1
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 3.2e-123 446.0 305 70.5
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 4.2e-123 445.7 378 59.8
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 1.6e-122 443.7 421 56.1
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 3.4e-120 436.0 382 59.2
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 2.8e-114 416.4 433 52.9
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 1.2e-112 411.0 389 56.8
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 7.0e-110 401.7 324 62.3
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 1.0e-105 387.9 400 53.5
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.2e-96 357.8 284 62.0
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 8.3e-95 351.7 238 75.6
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 5.4e-94 349.0 239 73.2
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 3.5e-85 319.7 340 51.2
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.0e-84 316.6 425 44.5
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 2.1e-82 310.5 340 50.3
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 1.1e-67 261.5 429 36.6
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 4.6e-61 239.6 330 40.0
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.3e-60 237.3 212 59.4
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 7.6e-56 222.2 322 42.5
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 5.5e-54 216.1 189 59.8
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 3.7e-50 203.4 188 58.0
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 2.0e-48 197.6 137 66.4
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 2.2e-47 194.1 390 35.4
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 5.1e-44 183.0 188 53.2
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 2.4e-41 174.1 305 38.7
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 3.9e-36 156.8 251 39.0
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 5.1e-36 156.4 311 32.5
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 6.3e-26 122.9 102 62.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 3.8e-23 113.6 150 44.0
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.1e-22 112.1 113 49.6
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 1.4e-20 105.1 330 26.1
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 4.0e-20 103.6 76 65.8
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 7.0e-17 92.8 76 56.6
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 7.0e-17 92.8 76 56.6
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 5.9e-16 89.7 124 38.7
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.8e-12 78.2 62 58.1
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 4.0e-12 77.0 56 66.1
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.1e-09 68.9 63 58.7
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 9.1e-09 65.9 53 66.0
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 3.5e-08 63.9 39 71.8
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 3.8e-07 60.5 37 67.6
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.1e-06 58.9 48 54.2
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 2.5e-06 57.8 200 25.5
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 2.5e-06 57.8 200 25.0
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 2.5e-06 57.8 201 26.4
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 3.2e-06 57.4 201 26.4
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 4.2e-06 57.0 201 26.4
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 4.2e-06 57.0 200 24.5
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 5.5e-06 56.6 201 25.9
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 7.2e-06 56.2 201 25.9
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 9.4e-06 55.8 202 27.7
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 9.4e-06 55.8 202 27.7


User provided reference genes

Program Settings