Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 4.9e-202 707.6 358 100.0
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 6.8e-79 298.5 188 79.8
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 2.4e-63 246.9 297 46.1
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 4.6e-59 232.6 274 44.9
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 2.3e-58 230.3 293 42.7
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 7.6e-54 215.3 301 41.9
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 9.9e-54 214.9 283 43.5
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.2e-53 213.8 255 45.9
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 3.8e-53 213.0 315 40.0
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 3.2e-52 209.9 346 39.3
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 9.3e-52 208.4 253 43.1
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 7.8e-51 205.3 251 41.8
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 1.7e-50 204.1 293 41.6
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 8.7e-50 201.8 307 36.5
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 4.8e-48 196.1 326 39.6
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.1e-47 194.9 271 40.2
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 2.4e-47 193.7 298 37.9
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 3.1e-47 193.4 188 50.0
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.2e-46 191.4 298 37.2
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 1.5e-46 191.0 327 37.3
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 4.5e-46 189.5 282 38.3
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 5.8e-46 189.1 214 44.4
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 7.6e-46 188.7 292 40.1
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 7.6e-46 188.7 279 38.0
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 3.8e-45 186.4 276 38.4
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 3.8e-45 186.4 298 37.6
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 6.4e-45 185.7 247 40.5
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 3.5e-43 179.9 254 39.8
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 4.6e-43 179.5 293 38.6
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.8e-42 177.6 318 36.5
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 1.8e-42 177.6 309 36.2
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 1.8e-42 177.6 309 34.6
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 2.3e-42 177.2 290 37.9
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 2.3e-42 177.2 290 37.9
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 8.7e-42 175.3 309 37.9
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 1.5e-41 174.5 295 38.0
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.5e-41 174.5 311 37.0
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.6e-40 171.0 241 41.5
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.6e-40 171.0 304 36.8
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 2.1e-40 170.6 298 38.6
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 2.8e-40 170.2 244 40.6
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 4.8e-40 169.5 291 37.1
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 6.2e-40 169.1 176 45.5
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 7.6e-38 162.2 165 45.5
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 9.9e-38 161.8 254 39.4
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 3.8e-37 159.8 249 38.2
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 5.5e-36 156.0 308 34.1
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 3.5e-35 153.3 217 40.1
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 4.6e-35 152.9 314 32.5
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.3e-34 151.4 315 33.3
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 3.9e-34 149.8 238 39.5
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.1e-33 148.3 227 42.7
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 4.3e-33 146.4 192 42.7
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 4.5e-30 136.3 156 46.2
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 8.4e-29 132.1 220 36.4
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 8.4e-29 132.1 217 34.1
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 6.0e-27 125.9 196 37.8
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.0e-26 125.2 179 38.5
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 1.5e-25 121.3 146 41.8
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 4.3e-25 119.8 141 41.8
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.8e-24 116.3 157 40.1
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 1.4e-23 114.8 244 32.8
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 5.3e-23 112.8 153 41.8
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 9.0e-23 112.1 315 30.2
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.2e-22 111.7 145 40.0
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 4.5e-22 109.8 155 36.1
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.0e-21 108.6 154 35.7
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.3e-21 108.2 154 35.7
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 2.2e-21 107.5 141 39.7
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 3.8e-21 106.7 141 39.7
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 3.8e-21 106.7 142 38.7
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 5.0e-21 106.3 155 38.1
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 5.0e-21 106.3 163 39.3
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 6.5e-21 105.9 142 39.4
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 8.5e-21 105.5 156 37.2
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.1e-20 105.1 141 39.0
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 1.1e-20 105.1 141 39.0
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 1.1e-20 105.1 142 39.4
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 1.1e-20 105.1 142 39.4
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 1.4e-20 104.8 142 39.4
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 4.2e-20 103.2 141 38.3
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 4.2e-20 103.2 287 29.6
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 7.2e-20 102.4 140 37.9
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 7.2e-20 102.4 166 34.3
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.6e-19 101.3 149 35.6
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.1e-19 100.9 222 31.5
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.7e-19 100.5 152 38.2
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 2.7e-19 100.5 154 35.7
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 4.6e-19 99.8 131 38.2
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 6.1e-19 99.4 152 34.9
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.0e-18 98.6 144 38.9
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.0e-18 98.6 151 37.1
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.8e-18 97.8 150 36.7
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 3.9e-18 96.7 128 39.8
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 3.9e-18 96.7 147 36.1
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 3.9e-18 96.7 154 37.0
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 5.1e-18 96.3 112 41.1
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 5.1e-18 96.3 129 41.1
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.5e-17 94.0 151 34.4
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 2.5e-17 94.0 161 33.5
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 4.3e-17 93.2 157 36.9
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 4.3e-17 93.2 161 33.5
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 2.2e-16 90.9 153 33.3
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 4.8e-16 89.7 175 32.6
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 4.1e-15 86.7 87 44.8
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 6.9e-15 85.9 146 37.7
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.0e-14 84.3 76 51.3
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.0e-14 84.3 76 51.3
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 3.4e-14 83.6 143 33.6
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 5.9e-14 82.8 146 31.5
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.0e-13 82.0 150 32.0
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 1.0e-13 82.0 156 29.5
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.3e-13 81.6 145 35.2
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 1.3e-13 81.6 178 33.7
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 3.8e-13 80.1 145 35.2
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 5.0e-13 79.7 133 35.3
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 2.5e-12 77.4 113 35.4
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 7.2e-12 75.9 178 32.6
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 9.4e-12 75.5 146 31.5
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 4.7e-11 73.2 158 31.6
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 7.9e-11 72.4 89 40.4
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 7.9e-11 72.4 108 38.0
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 2.3e-10 70.9 110 38.2
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 6.7e-10 69.3 186 27.4
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 1.1e-09 68.6 92 35.9
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.6e-09 67.4 233 30.5
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 3.3e-09 67.0 109 36.7
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 9.7e-09 65.5 286 25.5
Hma1.2p1_1389F.1_g280030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.2e-08 64.3 62 48.4
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 3.7e-08 63.5 72 36.1
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 4.8e-08 63.2 161 32.3
Hma1.2p1_0048F.1_g028060 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.4e-07 61.6 63 47.6
BolC3t13228H Brassica oleracea HOM05D009880 ORTHO05D004072 4.1e-07 60.1 74 39.2
Hma1.2p1_1407F.1_g281470 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 7.0e-07 59.3 59 44.1
Hma1.2p1_0283F.1_g113450 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 9.1e-07 58.9 61 47.5
Hma1.2p1_1219F.1_g267960 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.2e-06 58.5 47 57.4
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.5e-06 58.2 52 50.0
Hma1.2p1_0362F.1_g136570 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.5e-06 58.2 47 57.4
CAN.G1343.17 Capsicum annuum HOM05D009408 ORTHO05D000309 3.5e-06 57.0 73 39.7
MBI11_g02483_MAGBIO Magnolia biondii HOM05D056835 ORTHO05D004072 4.5e-06 56.6 50 46.0
CAN.G490.13 Capsicum annuum HOM05D009408 ORTHO05D000309 5.9e-06 56.2 64 39.1
Hma1.2p1_0128F.1_g059990 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.9e-06 56.2 61 47.5
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.9e-06 56.2 64 43.8


User provided reference genes

Program Settings