Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.7e-176 622.5 296 100.0
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 6.7e-80 301.6 188 79.8
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 2.9e-35 153.3 209 40.7
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.2e-33 147.9 197 42.6
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 6.7e-32 142.1 182 41.2
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 6.7e-32 142.1 121 54.5
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 1.2e-31 141.4 201 41.3
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 2.6e-31 140.2 111 56.8
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 2.2e-30 137.1 123 50.4
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 1.1e-29 134.8 184 40.8
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 1.8e-29 134.0 200 38.5
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 3.1e-29 133.3 110 53.6
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 4.1e-29 132.9 137 46.7
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 1.6e-28 131.0 127 48.0
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 2.0e-28 130.6 125 51.2
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 2.0e-28 130.6 125 51.2
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 3.5e-28 129.8 124 50.0
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 3.5e-28 129.8 100 57.0
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 4.5e-28 129.4 129 51.2
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 5.9e-28 129.0 97 55.7
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 5.9e-28 129.0 97 55.7
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 7.7e-28 128.6 186 40.9
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 1.0e-27 128.3 107 52.3
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 2.9e-27 126.7 187 38.5
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 3.8e-27 126.3 124 46.8
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 3.8e-27 126.3 180 38.9
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 5.0e-27 125.9 112 48.2
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 6.5e-27 125.6 176 37.5
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 8.5e-27 125.2 190 39.5
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.1e-26 124.8 180 40.6
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 1.1e-26 124.8 100 51.0
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 1.1e-26 124.8 192 38.5
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.5e-26 124.4 125 48.8
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.5e-26 124.4 187 38.0
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.9e-26 124.0 107 51.4
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 1.9e-26 124.0 127 47.2
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.9e-26 124.0 186 39.8
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 4.2e-26 122.9 113 47.8
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 4.2e-26 122.9 117 47.9
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 9.4e-26 121.7 177 37.9
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 9.4e-26 121.7 177 38.4
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 9.4e-26 121.7 177 38.4
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 6.1e-25 119.0 176 36.4
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.4e-24 117.9 186 38.7
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.8e-24 117.5 119 46.2
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 2.3e-24 117.1 177 40.7
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 2.3e-24 117.1 185 36.2
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 8.8e-24 115.2 225 33.3
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 2.0e-23 114.0 104 53.8
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 7.5e-23 112.1 203 34.5
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 1.2e-20 104.8 191 34.6
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 4.5e-20 102.8 94 52.1
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.4e-16 91.3 110 45.5
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.3e-16 90.5 141 40.4
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.2e-15 88.2 141 39.0
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.0e-15 87.4 91 44.0
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 3.4e-15 86.7 91 44.0
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 7.5e-15 85.5 109 41.3
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 9.8e-15 85.1 109 41.3
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.3e-14 84.7 91 42.9
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.2e-14 84.0 103 42.7
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 2.8e-14 83.6 48 68.8
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 8.3e-14 82.0 100 45.0
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 1.1e-13 81.6 64 57.8
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 1.4e-13 81.3 92 41.3
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 4.1e-13 79.7 171 33.3
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 4.1e-13 79.7 92 42.4
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 4.1e-13 79.7 67 50.7
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 4.1e-13 79.7 118 40.7
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 5.4e-13 79.3 92 40.2
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 7.0e-13 79.0 45 64.4
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 7.0e-13 79.0 93 40.9
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 7.0e-13 79.0 93 40.9
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 9.2e-13 78.6 94 41.5
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 1.2e-12 78.2 92 46.7
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 2.0e-12 77.4 91 40.7
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 3.5e-12 76.6 91 40.7
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 4.5e-12 76.3 91 44.0
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 5.9e-12 75.9 91 40.7
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 5.9e-12 75.9 94 40.4
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 7.8e-12 75.5 91 41.8
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 1.0e-11 75.1 91 41.8
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 1.0e-11 75.1 91 41.8
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.0e-11 75.1 91 41.8
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.3e-11 74.7 106 37.7
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.3e-11 74.7 91 39.6
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 1.3e-11 74.7 91 39.6
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 1.3e-11 74.7 91 39.6
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 1.3e-11 74.7 91 41.8
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.7e-11 74.3 91 39.6
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 3.8e-11 73.2 83 39.8
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.1e-10 71.6 95 36.8
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 1.1e-10 71.6 101 36.6
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.9e-10 70.9 49 57.1
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 1.9e-10 70.9 132 32.6
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.3e-10 70.1 96 35.4
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 3.3e-10 70.1 132 32.6
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 4.3e-10 69.7 97 36.1
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 5.6e-10 69.3 93 36.6
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 7.3e-10 68.9 82 41.5
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.2e-09 68.2 73 41.1
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 3.6e-09 66.6 97 35.1
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 4.7e-09 66.2 73 42.5
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 6.1e-09 65.9 94 37.2
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 6.1e-09 65.9 96 39.6
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 6.1e-09 65.9 91 39.6
Hma1.2p1_1389F.1_g280030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.0e-08 65.1 68 45.6
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.4e-08 64.7 95 36.8
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.8e-08 64.3 92 37.0
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 2.3e-08 63.9 61 42.6
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 5.2e-08 62.8 120 29.2
Hma1.2p1_0048F.1_g028060 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 6.8e-08 62.4 69 46.4
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 8.9e-08 62.0 50 54.0
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 8.9e-08 62.0 67 43.3
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 8.9e-08 62.0 67 43.3
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.6e-07 60.5 52 50.0
Hma1.2p1_0283F.1_g113450 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.6e-07 60.5 67 44.8
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 3.4e-07 60.1 51 49.0
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.4e-07 59.7 58 46.6
Hma1.2p1_1219F.1_g267960 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.4e-07 59.7 61 50.8
Hma1.2p1_0362F.1_g136570 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.7e-07 59.3 53 52.8
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 9.8e-07 58.5 103 31.1
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 1.3e-06 58.2 31 74.2
Hma1.2p1_1407F.1_g281470 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.3e-06 58.2 59 44.1
CAN.G1343.17 Capsicum annuum HOM05D009408 ORTHO05D000309 1.7e-06 57.8 73 41.1
Hma1.2p1_0128F.1_g059990 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.7e-06 57.8 67 44.8
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.7e-06 57.8 70 41.4
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.2e-06 57.4 50 48.0
CAN.G490.13 Capsicum annuum HOM05D009408 ORTHO05D000309 3.7e-06 56.6 64 39.1
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 3.7e-06 56.6 116 35.3
Hma1.2p1_0470F.1_g159220 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.7e-06 56.6 68 42.6
MBI11_g02483_MAGBIO Magnolia biondii HOM05D056835 ORTHO05D004072 3.7e-06 56.6 50 46.0
Rhsim13G0069200 Rhododendron simsii HOM05D013584 ORTHO05D029230 3.7e-06 56.6 89 34.8
CAN.G1459.18 Capsicum annuum HOM05D009408 ORTHO05D000309 4.9e-06 56.2 66 45.5
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 4.9e-06 56.2 91 35.2
DCAR_029957 Daucus carota HOM05D000089 ORTHO05D000104 6.4e-06 55.8 63 46.0
Oeu001038.1 Olea europaea HOM05D001383 ORTHO05D000309 6.4e-06 55.8 57 45.6
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 8.3e-06 55.5 93 36.6


User provided reference genes

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