Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 7.8e-191 670.2 323 100.0
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 2.6e-93 346.3 387 46.3
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 8.3e-92 341.3 393 48.1
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 1.7e-89 333.6 395 46.8
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 8.6e-89 331.3 400 47.0
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.9e-88 330.1 387 46.0
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.2e-88 329.3 395 46.1
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 7.2e-88 328.2 396 45.5
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.0e-86 324.3 403 43.4
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 1.4e-86 323.9 396 44.4
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.3e-86 323.2 352 48.3
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 4.0e-86 322.4 399 45.6
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 6.8e-86 321.6 395 43.5
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 8.9e-86 321.2 402 43.8
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.3e-84 317.4 394 42.6
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.7e-84 317.0 396 43.9
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.7e-84 317.0 384 43.2
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 2.8e-84 316.2 396 45.2
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 4.9e-84 315.5 395 44.1
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 8.3e-84 314.7 396 43.4
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 8.3e-84 314.7 403 42.7
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.8e-83 313.5 396 44.2
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 4.1e-83 312.4 380 43.2
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 5.4e-83 312.0 395 42.5
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 7.0e-83 311.6 367 45.2
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 7.0e-83 311.6 402 43.5
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 7.0e-83 311.6 392 42.3
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 7.0e-83 311.6 396 43.7
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.2e-82 310.8 391 43.0
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.2e-82 310.8 394 42.9
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.2e-82 310.8 396 43.2
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.6e-82 310.5 395 43.3
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.0e-82 310.1 398 43.0
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.0e-82 310.1 377 43.8
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 2.7e-82 309.7 396 43.2
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 2.7e-82 309.7 395 42.8
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 3.5e-82 309.3 392 42.1
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 5.9e-82 308.5 394 43.4
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 5.9e-82 308.5 395 44.3
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 7.8e-82 308.1 394 42.6
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 7.8e-82 308.1 392 41.3
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 7.8e-82 308.1 395 42.5
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.0e-81 307.8 391 42.7
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.3e-81 307.4 394 42.6
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.7e-81 307.0 395 43.8
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.9e-81 306.2 395 43.3
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 3.8e-81 305.8 397 43.3
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 5.0e-81 305.4 394 42.1
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.0e-81 305.4 392 41.3
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 5.0e-81 305.4 391 42.2
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 8.6e-81 304.7 397 42.3
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 8.6e-81 304.7 395 42.3
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.5e-80 303.1 395 41.0
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.3e-80 302.4 403 41.4
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 5.6e-80 302.0 397 43.6
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 7.3e-80 301.6 397 41.8
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 7.3e-80 301.6 395 41.5
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 7.3e-80 301.6 395 42.5
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 7.3e-80 301.6 397 41.8
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 9.5e-80 301.2 397 41.8
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 9.5e-80 301.2 397 41.8
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 9.5e-80 301.2 397 42.3
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.6e-79 300.4 397 41.8
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.6e-79 300.4 397 42.1
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 2.1e-79 300.1 397 41.8
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 2.1e-79 300.1 397 41.8
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.1e-79 300.1 391 41.4
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.8e-79 299.7 395 42.5
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 2.8e-79 299.7 395 41.3
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 3.6e-79 299.3 396 41.9
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 3.6e-79 299.3 391 42.2
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 3.6e-79 299.3 397 42.3
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 4.7e-79 298.9 397 41.8
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.0e-79 298.1 394 41.9
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.0e-78 297.7 397 42.6
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.0e-78 297.7 396 42.9
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.8e-78 297.0 401 42.1
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 2.3e-78 296.6 396 41.7
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.3e-78 296.6 394 41.6
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 5.2e-78 295.4 395 41.8
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 5.2e-78 295.4 395 41.8
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 6.8e-78 295.0 398 41.0
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 8.9e-78 294.7 395 40.8
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.2e-77 294.3 394 41.6
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.2e-77 294.3 397 40.3
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.5e-77 293.9 397 40.8
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.0e-77 293.5 397 41.8
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 2.0e-77 293.5 396 42.7
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 4.4e-77 292.4 395 42.0
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 5.7e-77 292.0 395 40.8
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 5.7e-77 292.0 395 40.3
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 7.5e-77 291.6 395 40.8
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.4e-75 287.3 392 40.6
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 2.4e-75 286.6 390 41.3
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 9.2e-75 284.6 391 40.2
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 9.2e-75 284.6 390 41.0
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 2.0e-74 283.5 372 40.1
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 2.7e-74 283.1 387 40.1
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 2.7e-74 283.1 392 41.1
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 6.0e-74 282.0 362 42.5
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 7.8e-74 281.6 389 39.8
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.7e-73 280.4 387 39.8
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 2.3e-73 280.0 391 41.4
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.0e-73 279.6 391 39.1
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.5e-72 277.3 393 39.7
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.3e-72 276.2 382 40.3
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 7.3e-72 275.0 380 40.3
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.6e-71 273.9 365 41.6
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 2.8e-71 273.1 397 39.8
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.8e-70 270.4 382 38.7
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 3.1e-70 269.6 384 39.1
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.2e-69 267.7 393 39.2
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.2e-69 267.7 385 38.7
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 2.6e-69 266.5 383 38.9
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.6e-69 266.5 384 40.6
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 2.6e-69 266.5 383 38.6
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.4e-69 266.2 386 40.4
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.4e-69 265.8 383 39.2
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.4e-69 265.8 383 39.2
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.7e-68 263.8 385 37.7
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.7e-68 263.8 391 39.1
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.4e-67 260.0 382 39.0
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.4e-67 260.0 382 39.0
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 5.4e-67 258.8 378 38.6
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 7.0e-67 258.5 402 37.8
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 9.2e-67 258.1 381 40.2
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.7e-65 253.8 385 38.7
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 3.9e-65 252.7 400 37.2
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.5e-64 250.8 361 37.1
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 3.6e-63 246.1 403 35.7
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 7.1e-59 231.9 399 36.3
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 9.2e-59 231.5 403 36.0
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.1e-56 224.6 302 44.4
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 6.2e-55 218.8 391 34.5
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.5e-53 214.2 297 43.8
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.9e-51 207.2 307 39.7
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.9e-51 207.2 186 54.3
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 7.3e-48 195.3 389 32.6
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 7.6e-45 185.3 165 52.1
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.1e-43 181.4 349 35.0
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.2e-42 177.9 310 40.0
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.6e-39 166.4 178 48.9
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 2.0e-37 160.6 160 50.6
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 9.0e-30 135.2 250 34.0
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 4.6e-26 122.9 432 25.5
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.3e-23 114.8 122 47.5
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.4e-22 111.3 230 32.6
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.4e-22 111.3 236 30.9
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.5e-19 100.5 78 60.3
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 2.5e-16 90.5 66 62.1
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.5e-08 64.7 216 26.9
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 2.2e-07 60.8 38 65.8


User provided reference genes

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