Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 2.3e-254 881.7 443 100.0
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 1.3e-159 567.0 440 66.6
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 6.5e-156 554.7 434 64.7
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 2.0e-152 543.1 436 62.8
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 2.1e-146 523.1 418 63.4
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 1.4e-145 520.4 440 62.0
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.0e-145 519.2 430 62.8
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.0e-145 519.2 430 62.8
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 5.2e-145 518.5 438 61.2
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 8.8e-145 517.7 426 62.4
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 1.2e-144 517.3 409 64.5
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.6e-144 516.2 426 62.4
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 7.0e-142 508.1 438 60.0
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 1.2e-141 507.3 417 61.4
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 1.6e-141 506.9 421 61.3
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 5.9e-141 505.0 417 61.2
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 5.9e-141 505.0 417 60.9
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 1.0e-140 504.2 430 60.5
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 1.3e-140 503.8 425 60.5
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 2.3e-140 503.1 427 60.7
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 1.5e-139 500.4 425 60.5
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 3.3e-139 499.2 416 60.6
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 3.4e-136 489.2 426 58.0
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 5.4e-134 481.9 430 59.3
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 9.2e-134 481.1 460 57.0
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 1.1e-131 474.2 419 58.2
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.3e-131 472.2 416 58.2
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 4.7e-130 468.8 494 52.0
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 8.9e-129 464.5 433 57.3
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 9.8e-128 461.1 444 56.1
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 6.0e-125 451.8 433 55.7
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 1.0e-124 451.1 451 52.3
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 1.1e-123 447.6 427 53.9
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 5.6e-123 445.3 440 54.3
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 5.6e-123 445.3 438 55.0
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 9.5e-123 444.5 444 52.9
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 9.5e-123 444.5 451 52.1
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 8.0e-122 441.4 448 52.7
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 8.0e-122 441.4 431 55.2
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 2.3e-121 439.9 438 52.5
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.0e-121 439.1 412 56.8
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 1.5e-120 437.2 431 53.6
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 5.8e-120 435.3 433 54.7
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 2.9e-119 433.0 432 54.9
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 3.7e-119 432.6 433 54.3
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 4.1e-118 429.1 438 52.5
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.6e-117 427.2 445 52.1
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 7.8e-117 424.9 441 50.3
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 1.7e-116 423.7 448 49.1
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 2.3e-116 423.3 433 53.3
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 3.9e-116 422.5 438 52.3
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 1.1e-115 421.0 420 53.3
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 4.3e-115 419.1 433 51.5
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 7.3e-115 418.3 354 60.7
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 4.7e-114 415.6 436 52.3
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 1.1e-113 414.5 449 49.9
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 5.8e-112 408.7 437 49.2
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 7.6e-112 408.3 441 49.0
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 1.3e-111 407.5 411 51.8
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 1.3e-111 407.5 439 52.2
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 2.9e-111 406.4 355 58.6
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 1.4e-110 404.1 417 52.0
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.6e-109 400.6 438 50.2
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 1.3e-108 397.5 434 49.8
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 1.3e-108 397.5 330 64.2
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 3.0e-108 396.4 436 49.5
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 6.6e-108 395.2 407 51.8
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 8.6e-108 394.8 435 49.0
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 8.6e-108 394.8 431 51.7
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 1.1e-107 394.4 438 49.8
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.9e-107 393.7 435 49.2
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 4.3e-107 392.5 432 49.5
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 4.3e-107 392.5 437 48.7
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 4.3e-107 392.5 343 61.2
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 2.1e-106 390.2 432 49.5
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 8.1e-106 388.3 428 48.4
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 1.1e-105 387.9 444 49.8
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.4e-105 387.5 447 48.3
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.8e-105 387.1 317 64.4
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 1.5e-104 384.0 431 49.4
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 7.6e-104 381.7 444 48.2
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 1.7e-103 380.6 447 47.4
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 4.9e-103 379.0 437 47.8
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.1e-102 377.9 447 46.5
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.1e-102 377.9 440 47.5
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 3.2e-102 376.3 438 48.4
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 9.3e-102 374.8 416 48.8
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 1.2e-101 374.4 445 46.5
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 1.6e-101 374.0 436 47.5
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.1e-101 373.6 416 48.6
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 7.8e-101 371.7 439 46.7
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 1.5e-99 367.5 424 47.6
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 2.5e-99 366.7 436 47.7
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 2.4e-97 360.1 376 51.9
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 1.2e-96 357.8 334 54.8
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 1.4e-89 334.3 303 56.8
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 6.7e-84 315.5 334 51.2
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 2.1e-82 310.5 301 57.1
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 6.2e-82 308.9 425 43.3
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 4.2e-78 296.2 317 50.8
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 5.7e-75 285.8 248 59.3
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 2.8e-74 283.5 263 56.3
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 6.5e-71 272.3 273 52.7
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 1.5e-64 251.1 201 67.2
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 1.2e-61 241.5 397 35.8
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 1.8e-57 227.6 241 51.9
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 3.1e-57 226.9 207 58.5
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.7e-55 221.1 419 33.7
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 6.7e-52 209.1 420 32.9
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 9.7e-51 205.3 402 33.1
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.2e-48 198.4 425 31.8
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 5.0e-47 193.0 160 61.9
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 2.5e-46 190.7 144 65.3
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 4.2e-46 189.9 166 59.0
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 4.0e-44 183.3 399 30.8
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 6.7e-44 182.6 394 30.5
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 9.8e-35 152.1 130 61.5
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 1.4e-33 148.3 214 46.3
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 5.9e-32 142.9 218 41.3
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 4.2e-30 136.7 112 59.8
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 2.7e-29 134.0 135 53.3
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 2.2e-26 124.4 105 61.0
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 3.6e-21 107.1 107 48.6
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 8.0e-21 105.9 190 39.5
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 8.9e-20 102.4 132 46.2
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 2.0e-19 101.3 103 49.5
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 2.6e-19 100.9 114 48.2
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 3.9e-15 87.0 58 69.0
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 4.4e-11 73.6 430 22.6
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 5.8e-11 73.2 49 71.4
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 1.9e-09 68.2 340 23.5
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.9e-09 68.2 60 55.0
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 1.9e-09 68.2 134 26.9
Atru.BG.299.p Acer truncatum HOM05D000001 ORTHO05D000003 3.2e-09 67.4 246 22.4
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 4.1e-09 67.0 338 22.8
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 5.4e-09 66.6 406 20.7
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 5.4e-09 66.6 402 20.4
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 9.2e-09 65.9 351 22.2
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 9.2e-09 65.9 351 22.2
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 1.2e-08 65.5 351 22.8
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 1.2e-08 65.5 351 22.8
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 1.2e-08 65.5 351 22.8
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 1.6e-08 65.1 336 22.0
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 2.0e-08 64.7 53 62.3
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 2.0e-08 64.7 50 62.0
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 2.7e-08 64.3 154 28.6
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 4.6e-08 63.5 342 21.6
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 4.6e-08 63.5 398 22.4
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 1.3e-07 62.0 136 25.0
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 1.3e-07 62.0 383 23.8
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 1.3e-07 62.0 344 23.5
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 1.3e-07 62.0 344 23.5
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 3.9e-07 60.5 148 20.9
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 5.0e-07 60.1 383 20.1
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 5.0e-07 60.1 35 77.1
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 5.0e-07 60.1 64 46.9
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 6.6e-07 59.7 35 77.1
BcaC07g39395 Brassica carinata HOM05D006156 ORTHO05D007699 8.6e-07 59.3 142 26.8
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 8.6e-07 59.3 351 20.2
AagrBONN_evm.TU.Sc2ySwM_228.5321 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-06 58.9 286 24.8
CiPaw.05G196700 Carya illinoinensis HOM05D006156 ORTHO05D007699 1.1e-06 58.9 103 31.1
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.1e-06 58.9 389 19.8
Medtr1g113010 Medicago truncatula HOM05D006156 ORTHO05D007699 1.1e-06 58.9 175 23.4
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 1.5e-06 58.5 40 70.0
Cc00_g02360 Coffea canephora HOM05D000424 ORTHO05D000355 1.5e-06 58.5 143 28.0
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 1.5e-06 58.5 179 22.9
Duzib093G0352 Durio zibethinus HOM05D000424 ORTHO05D000355 1.9e-06 58.2 143 26.6
Duzib093G1185 Durio zibethinus HOM05D000424 ORTHO05D000355 1.9e-06 58.2 143 26.6
Cpa.g.c26548.5 Carica papaya HOM05D004783 ORTHO05D005581 2.5e-06 57.8 238 22.7
CBR_g20311 Chara braunii HOM05D007251 ORTHO05D009266 2.5e-06 57.8 132 31.8
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 3.3e-06 57.4 56 53.6
Medtr3g091460 Medicago truncatula HOM05D006156 ORTHO05D007699 3.3e-06 57.4 175 23.4
Aa31LG3G16450 Aethionema arabicum HOM05D007251 ORTHO05D009266 5.6e-06 56.6 96 40.6
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 5.6e-06 56.6 384 21.1
CsaV3_7G030850 Cucumis sativus L. HOM05D001779 ORTHO05D001753 5.6e-06 56.6 139 27.3
Aqoxy7G03087 Aquilegia oxysepala HOM05D007251 ORTHO05D009266 7.3e-06 56.2 154 31.2
Sed0001001 Sechium edule HOM05D001779 ORTHO05D001753 7.3e-06 56.2 141 27.7
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 9.5e-06 55.8 109 30.3
Dinv27276 Davidia involucrata HOM05D000424 ORTHO05D000355 9.5e-06 55.8 143 25.9
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 9.5e-06 55.8 154 27.9
MBI04_g31977_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 9.5e-06 55.8 154 27.3


User provided reference genes

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