Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016923 Vanilla planifolia HOM05D004938 ORTHO05D006035 5.0e-271 937.2 472 100.0
HPP92_016866 Vanilla planifolia HOM05D004938 ORTHO05D006035 1.3e-226 789.6 521 80.6
HPP92_016876 Vanilla planifolia HOM05D004938 ORTHO05D006035 3.5e-139 499.2 460 63.9
TAR633G0197 Trochodendron aralioides HOM05D004938 ORTHO05D006035 9.2e-92 341.7 472 44.7
Peaxi162Scf01336g00121 Petunia axillaris HOM05D004938 ORTHO05D006035 2.5e-89 333.6 459 42.3
PSO170G2096 Papaver somniferum HOM05D004938 ORTHO05D006035 9.6e-89 331.6 449 45.0
Nitab4.5_0000144g0140 Nicotiana tabacum HOM05D004938 ORTHO05D006035 2.1e-88 330.5 484 41.9
PSO302G0105 Papaver somniferum HOM05D004938 ORTHO05D006035 2.8e-88 330.1 448 44.9
Nitab4.5_0000180g0010 Nicotiana tabacum HOM05D004938 ORTHO05D006035 8.1e-88 328.6 484 41.9
Nn4g26248 Nelumbo nucifera HOM05D004938 ORTHO05D006035 3.1e-87 326.6 471 43.5
CiPaw.02G094500 Carya illinoinensis HOM05D004938 ORTHO05D006035 6.9e-87 325.5 461 43.6
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 3.8e-85 319.7 462 43.1
MBI17_g12492_MAGBIO Magnolia biondii HOM05D004938 ORTHO05D006035 1.1e-84 318.2 519 42.2
Sc19g0004370 Simmondsia chinensis HOM05D004938 ORTHO05D006035 3.2e-84 316.6 447 43.8
CAN.G69.12 Capsicum annuum HOM05D004938 ORTHO05D006035 7.1e-84 315.5 454 42.1
Ciclev10004613m.g Citrus clementina HOM05D004938 ORTHO05D006035 9.3e-84 315.1 470 42.1
GSVIVG01017919001 Vitis vinifera HOM05D004938 ORTHO05D006035 2.7e-83 313.5 471 41.4
Nn1g02221 Nelumbo nucifera HOM05D004938 ORTHO05D006035 4.6e-83 312.8 450 42.0
Solyc01g079720.3 Solanum lycopersicum HOM05D004938 ORTHO05D006035 1.0e-82 311.6 457 41.4
RcHm_v2.0_Chr4g0417151 Rosa chinensis HOM05D004938 ORTHO05D006035 1.3e-82 311.2 457 43.3
Sopen01g031490 Solanum pennellii HOM05D004938 ORTHO05D006035 1.3e-82 311.2 457 41.1
FAN12G2708 Fragaria x ananassa HOM05D004938 ORTHO05D006035 1.7e-82 310.8 472 41.5
Prupe.1G154400 Prunus persica HOM05D004938 ORTHO05D006035 3.0e-82 310.1 460 41.3
PGSC0003DMG400008998 Solanum tuberosum HOM05D004938 ORTHO05D006035 3.9e-82 309.7 458 41.0
FvH4_4g14950 Fragaria vesca HOM05D004938 ORTHO05D006035 6.6e-82 308.9 461 41.9
FAN17G1823 Fragaria x ananassa HOM05D004938 ORTHO05D006035 1.5e-81 307.8 462 41.6
ClCG06G005970 Citrullus lanatus HOM05D004938 ORTHO05D006035 3.3e-81 306.6 438 42.2
Atru.chr4.2523 Acer truncatum HOM05D004938 ORTHO05D006035 4.3e-81 306.2 468 40.4
Actinidia23495 Actinidia chinensis HOM05D004938 ORTHO05D006035 5.6e-81 305.8 436 43.3
Os03g0809700 Oryza sativa ssp. japonica HOM05D004938 ORTHO05D006035 5.6e-81 305.8 427 43.1
FAN07G1435 Fragaria x ananassa HOM05D004938 ORTHO05D006035 9.6e-81 305.1 462 41.3
MD13G1186700 Malus domestica HOM05D004938 ORTHO05D006035 1.3e-80 304.7 463 41.9
MD16G1187600 Malus domestica HOM05D004938 ORTHO05D006035 2.1e-80 303.9 472 40.9
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 6.2e-80 302.4 443 42.2
CANSAT78G1749 Cannabis sativa HOM05D004938 ORTHO05D006035 1.4e-79 301.2 469 39.9
Ca_24383_v3 Cicer arietinum L. HOM05D004938 ORTHO05D006035 1.4e-79 301.2 431 43.4
COL.COLO4_05833 Corchorus olitorius HOM05D004938 ORTHO05D006035 1.4e-79 301.2 452 41.4
Thecc.04G226400 Theobroma cacao HOM05D004938 ORTHO05D006035 1.8e-79 300.8 445 42.0
TWI09G0224 Tripterygium wilfordii HOM05D004938 ORTHO05D006035 2.4e-79 300.4 433 42.0
Dinv38414 Davidia involucrata HOM05D004938 ORTHO05D006035 4.0e-79 299.7 420 44.5
MELO3C014494.2 Cucumis melo HOM05D004938 ORTHO05D006035 9.0e-79 298.5 444 41.7
Dinv44503 Davidia involucrata HOM05D004938 ORTHO05D006035 1.5e-78 297.7 386 46.9
Duzib151G0907 Durio zibethinus HOM05D004938 ORTHO05D006035 1.5e-78 297.7 429 42.0
DCAR_030617 Daucus carota HOM05D004938 ORTHO05D006035 2.0e-78 297.4 445 41.1
Lsat_1_v5_gn_9_79740 Lactuca sativa HOM05D004938 ORTHO05D006035 2.0e-78 297.4 489 40.3
TWI73G0197 Tripterygium wilfordii HOM05D004938 ORTHO05D006035 2.0e-78 297.4 480 40.0
Gorai.006G053000 Gossypium raimondii HOM05D004938 ORTHO05D006035 2.6e-78 297.0 443 42.0
Oeu030329.2 Olea europaea HOM05D004938 ORTHO05D006035 3.4e-78 296.6 449 41.2
CSS0042089 Camellia sinensis var. sinensis HOM05D004938 ORTHO05D006035 5.8e-78 295.8 448 41.3
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 5.8e-78 295.8 448 41.3
FAN22G0132 Fragaria x ananassa HOM05D004938 ORTHO05D006035 5.8e-78 295.8 493 40.0
Gohir.D09G054100 Gossypium hirsutum HOM05D004938 ORTHO05D006035 5.8e-78 295.8 443 41.8
Glyma.11G004000 Glycine max HOM05D004938 ORTHO05D006035 4.9e-77 292.7 441 43.1
HanXRQChr13g0400271 Helianthus annuus HOM05D004938 ORTHO05D006035 1.4e-76 291.2 446 40.1
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.9e-76 290.8 445 41.6
Phvul.002G047600 Phaseolus vulgaris HOM05D004938 ORTHO05D006035 1.9e-76 290.8 444 41.4
Sabra08G0113800 Salix brachista HOM05D004938 ORTHO05D006035 1.9e-76 290.8 438 41.8
Sed0021968 Sechium edule HOM05D004938 ORTHO05D006035 1.9e-76 290.8 447 40.7
Potri.010G091500 Populus trichocarpa HOM05D004938 ORTHO05D006035 2.4e-76 290.4 472 40.3
CsaV3_6G038300 Cucumis sativus L. HOM05D004938 ORTHO05D006035 3.2e-76 290.0 443 41.1
Duzib212G0302 Durio zibethinus HOM05D004938 ORTHO05D006035 3.2e-76 290.0 446 41.3
PGR004G1283 Punica granatum HOM05D004938 ORTHO05D006035 3.2e-76 290.0 456 39.0
Manes.15G025800 Manihot esculenta HOM05D004938 ORTHO05D006035 4.2e-76 289.7 465 40.0
Aqoxy2G03327 Aquilegia oxysepala HOM05D004938 ORTHO05D006035 5.4e-76 289.3 456 43.0
Gohir.A09G055200 Gossypium hirsutum HOM05D004938 ORTHO05D006035 7.1e-76 288.9 425 42.1
Lj6C597G4 Lonicera japonica HOM05D000104 ORTHO05D006391 9.3e-76 288.5 428 42.1
Manes.03G181800 Manihot esculenta HOM05D004938 ORTHO05D006035 9.3e-76 288.5 445 41.3
Zm00001eb303240 Zea mays HOM05D004938 ORTHO05D006035 9.3e-76 288.5 421 42.5
Cpa.g.sc147.28 Carica papaya HOM05D004938 ORTHO05D006035 1.2e-75 288.1 457 41.4
EL10As3g23318 Beta vulgaris HOM05D004938 ORTHO05D006035 2.1e-75 287.3 414 43.0
Lalb_Chr06g0164791 Lupinus albus HOM05D004938 ORTHO05D006035 2.7e-75 287.0 439 40.8
Sed0014933 Sechium edule HOM05D004938 ORTHO05D006035 2.7e-75 287.0 423 41.8
Lj1g0006253 Lotus japonicus HOM05D004938 ORTHO05D006035 4.6e-75 286.2 452 41.6
Sp6g25140 Schrenkiella parvula HOM05D004938 ORTHO05D006035 6.0e-75 285.8 463 38.2
AT5G19280 Arabidopsis thaliana HOM05D004938 ORTHO05D006035 7.9e-75 285.4 477 38.8
arahy.Tifrunner.gnm1.ann1.AAS7XX Arachis hypogaea HOM05D004938 ORTHO05D006035 1.0e-74 285.0 439 39.0
arahy.Tifrunner.gnm1.ann1.CBXD69 Arachis hypogaea HOM05D004938 ORTHO05D006035 1.3e-74 284.6 439 39.2
Glyma.01G239700 Glycine max HOM05D004938 ORTHO05D006035 1.8e-74 284.3 438 40.9
AL6G30760 Arabidopsis lyrata HOM05D004938 ORTHO05D006035 2.3e-74 283.9 469 38.2
SGA_v2.0_scaffold10G05111 Striga asiatica HOM05D004938 ORTHO05D006035 2.3e-74 283.9 465 40.4
Cc03_g03380 Coffea canephora HOM05D004938 ORTHO05D006035 3.0e-74 283.5 451 41.5
ECA236G0716 Erigeron canadensis HOM05D004938 ORTHO05D006035 3.9e-74 283.1 454 41.0
Thhalv10013082m.g Eutrema salsugineum HOM05D004938 ORTHO05D006035 5.1e-74 282.7 475 37.3
VMungo1215G0596 Vigna mungo HOM05D004938 ORTHO05D006035 5.1e-74 282.7 442 41.6
MSTRG.21840 Avicennia marina HOM05D004938 ORTHO05D006035 1.9e-73 280.8 454 39.4
Psat4g211200 Pisum sativum HOM05D004938 ORTHO05D006035 3.3e-73 280.0 449 40.3
Migut.N00168 Erythranthe guttata HOM05D004938 ORTHO05D006035 7.4e-73 278.9 282 52.5
A10p20400 Brassica napus HOM05D004938 ORTHO05D006035 1.3e-72 278.1 458 40.2
Ah.04g154350 Amaranthus hybridus HOM05D004938 ORTHO05D006035 1.6e-72 277.7 404 43.3
Carub.0006s1761 Capsella rubella HOM05D004938 ORTHO05D006035 2.1e-72 277.3 474 36.3
TPR.G38053 Trifolium pratense HOM05D004938 ORTHO05D006035 2.8e-72 276.9 457 39.6
CARHR193690 Cardamine hirsuta HOM05D004938 ORTHO05D006035 4.8e-72 276.2 467 39.0
Eucgr.H03562 Eucalyptus grandis HOM05D004938 ORTHO05D006035 1.4e-71 274.6 425 39.1
Gohir.A02G029700 Gossypium hirsutum HOM05D004938 ORTHO05D006035 2.4e-71 273.9 453 39.5
Sc13g0004170 Simmondsia chinensis HOM05D004938 ORTHO05D006035 2.4e-71 273.9 316 46.5
Os07g0211400 Oryza sativa ssp. japonica HOM05D004938 ORTHO05D006035 3.1e-71 273.5 421 41.3
Gohir.D02G037500 Gossypium hirsutum HOM05D004938 ORTHO05D006035 5.3e-71 272.7 453 40.2
Gorai.005G041400 Gossypium raimondii HOM05D004938 ORTHO05D006035 5.3e-71 272.7 453 40.2
BcaB08g36589 Brassica carinata HOM05D004938 ORTHO05D006035 6.9e-71 272.3 451 38.4
Sabra10G0051800 Salix brachista HOM05D004938 ORTHO05D006035 2.0e-70 270.8 430 41.6
THA.LOC104822301 Tarenaya hassleriana HOM05D004938 ORTHO05D006035 2.0e-70 270.8 469 37.7
Lalb_Chr09g0319711 Lupinus albus HOM05D004938 ORTHO05D006035 2.6e-70 270.4 258 54.7
THA.LOC104818812 Tarenaya hassleriana HOM05D004938 ORTHO05D006035 5.8e-70 269.2 501 36.3
CDE10G1250 Ceratophyllum demersum HOM05D004938 ORTHO05D006035 7.6e-70 268.9 407 42.5
BcaC03g13661 Brassica carinata HOM05D004938 ORTHO05D006035 1.3e-69 268.1 427 40.5
BNapus_Darmor_BZH_scaffold_38p02660 Brassica napus HOM05D004938 ORTHO05D006035 1.7e-69 267.7 427 40.5
Medtr5g005810 Medicago truncatula HOM05D004938 ORTHO05D006035 2.9e-69 266.9 444 38.7
C09p57000 Brassica napus HOM05D004938 ORTHO05D006035 6.4e-69 265.8 424 40.1
BraA10t44110Z Brassica rapa HOM05D004938 ORTHO05D006035 8.4e-69 265.4 452 38.3
Hund12168 Selenicereus undatus HOM05D004938 ORTHO05D006035 8.4e-69 265.4 316 48.1
A02p05430 Brassica napus HOM05D004938 ORTHO05D006035 1.4e-68 264.6 430 39.5
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 3.2e-68 263.5 425 40.5
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 3.2e-68 263.5 425 40.5
BcaC04g18583 Brassica carinata HOM05D004938 ORTHO05D006035 4.2e-68 263.1 446 40.4
BcaC04g18584 Brassica carinata HOM05D004938 ORTHO05D006035 1.2e-67 261.5 452 37.6
Lj3A741G39 Lonicera japonica HOM05D004938 ORTHO05D006035 2.7e-67 260.4 455 38.2
BolC2t06952H Brassica oleracea HOM05D004938 ORTHO05D006035 3.5e-67 260.0 438 39.3
arahy.Tifrunner.gnm1.ann1.LHV27P Arachis hypogaea HOM05D004938 ORTHO05D006035 4.6e-67 259.6 290 49.7
Rhsim04G0204400 Rhododendron simsii HOM05D004938 ORTHO05D006035 3.0e-66 256.9 451 37.3
arahy.Tifrunner.gnm1.ann1.7D2JYW Arachis hypogaea HOM05D004938 ORTHO05D006035 3.9e-66 256.5 290 49.3
BraA02t05496Z Brassica rapa HOM05D004938 ORTHO05D006035 1.3e-64 251.5 455 36.9
Aa31LG11G10410 Aethionema arabicum HOM05D004938 ORTHO05D006035 2.1e-64 250.8 348 42.5
ATR0626G035 Amborella trichopoda HOM05D004938 ORTHO05D006035 8.2e-64 248.8 279 47.3
BolC9t58564H Brassica oleracea HOM05D004938 ORTHO05D006035 2.9e-61 240.4 287 46.7
AUR62043416 Chenopodium quinoa HOM05D004938 ORTHO05D006035 3.3e-57 226.9 411 37.0
Mapoly0156s0019 Marchantia polymorpha HOM05D004938 ORTHO05D006035 7.4e-57 225.7 293 43.0
AagrBONN_evm.TU.Sc2ySwM_368.1070 Anthoceros agrestis HOM05D004938 ORTHO05D006035 2.8e-56 223.8 317 42.6
AUR62038174 Chenopodium quinoa HOM05D004938 ORTHO05D006035 2.0e-54 217.6 264 45.5
Haze_00935 Corylus avellana HOM05D004938 ORTHO05D006035 1.3e-53 214.9 344 39.0
QL06p003549 Quercus lobata HOM05D004938 ORTHO05D006035 1.7e-53 214.5 299 42.5
Ah.13g073990 Amaranthus hybridus HOM05D004938 ORTHO05D006035 3.2e-52 210.3 412 36.2
SMO119G0313 Selaginella moellendorffii HOM05D004938 ORTHO05D006035 7.9e-51 205.7 293 42.0
Zm00001eb095260 Zea mays HOM05D004938 ORTHO05D006035 4.3e-49 199.9 354 38.4
Pp3c22_2480 Physcomitrium patens HOM05D004938 ORTHO05D006035 2.0e-46 191.0 273 43.2
Pp3c19_3420 Physcomitrium patens HOM05D004938 ORTHO05D006035 4.7e-43 179.9 263 43.0
Sed0019086 Sechium edule HOM05D004938 ORTHO05D006035 7.9e-43 179.1 259 42.1
TAR362G0044 Trochodendron aralioides HOM05D004938 ORTHO05D006035 7.7e-38 162.5 427 33.3
Actinidia40164 Actinidia chinensis HOM05D004938 ORTHO05D006035 6.7e-34 149.4 177 47.5
arahy.Tifrunner.gnm1.ann1.R4IW6W Arachis hypogaea HOM05D004938 ORTHO05D006035 1.7e-32 144.8 125 57.6
A03p35320 Brassica napus HOM05D004938 ORTHO05D006035 4.5e-30 136.7 261 36.0
CBR_g40443 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-28 131.0 206 40.3
A02p05380 Brassica napus HOM05D004938 ORTHO05D006035 2.4e-23 114.4 155 43.9
PRCOL_00000461 Prasinoderma coloniale HOM05D004938 ORTHO05D006035 8.3e-16 89.4 241 30.7
MCO07G413 Micromonas commoda HOM05D004938 ORTHO05D006035 7.0e-15 86.3 272 29.4
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.0e-10 72.4 110 36.4
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 2.2e-08 64.7 99 36.4
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 1.2e-06 58.9 119 30.3
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.6e-06 58.5 113 32.7
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.7e-06 57.8 89 34.8
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 3.5e-06 57.4 86 40.7
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 4.5e-06 57.0 91 38.5
HPP92_016918 Vanilla planifolia HOM05D004938 ORTHO05D427944 7.8e-06 56.2 30 90.0


User provided reference genes

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