Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016922 Vanilla planifolia HOM05D004938 ORTHO05D006035 4.7e-55 217.6 109 100.0
HPP92_016866 Vanilla planifolia HOM05D004938 ORTHO05D006035 1.1e-53 213.0 109 98.2
HPP92_016876 Vanilla planifolia HOM05D004938 ORTHO05D006035 6.3e-52 207.2 103 100.0
MBI17_g12492_MAGBIO Magnolia biondii HOM05D004938 ORTHO05D006035 1.5e-32 142.9 103 68.9
Os07g0211400 Oryza sativa ssp. japonica HOM05D004938 ORTHO05D006035 1.9e-32 142.5 103 66.0
FAN22G0132 Fragaria x ananassa HOM05D004938 ORTHO05D006035 1.2e-31 139.8 97 69.1
FvH4_4g14950 Fragaria vesca HOM05D004938 ORTHO05D006035 2.1e-31 139.0 100 67.0
FAN12G2708 Fragaria x ananassa HOM05D004938 ORTHO05D006035 6.1e-31 137.5 100 66.0
FAN07G1435 Fragaria x ananassa HOM05D004938 ORTHO05D006035 1.4e-30 136.3 100 67.0
TAR633G2430 Trochodendron aralioides HOM05D004938 ORTHO05D006035 1.4e-30 136.3 97 68.0
FAN17G1823 Fragaria x ananassa HOM05D004938 ORTHO05D006035 2.3e-30 135.6 97 68.0
GSVIVG01017919001 Vitis vinifera HOM05D004938 ORTHO05D006035 2.3e-30 135.6 106 62.3
Sed0014933 Sechium edule HOM05D004938 ORTHO05D006035 3.0e-30 135.2 98 62.2
MD13G1186700 Malus domestica HOM05D004938 ORTHO05D006035 6.8e-30 134.0 100 66.0
Nn4g26248 Nelumbo nucifera HOM05D004938 ORTHO05D006035 1.2e-29 133.3 109 62.4
Lalb_Chr06g0164791 Lupinus albus HOM05D004938 ORTHO05D006035 1.5e-29 132.9 97 67.0
Aqoxy2G03327 Aquilegia oxysepala HOM05D004938 ORTHO05D006035 2.0e-29 132.5 101 64.4
Phvul.002G047600 Phaseolus vulgaris HOM05D004938 ORTHO05D006035 2.6e-29 132.1 97 66.0
Glyma.01G239700 Glycine max HOM05D004938 ORTHO05D006035 4.4e-29 131.3 97 64.9
ClCG06G005970 Citrullus lanatus HOM05D004938 ORTHO05D006035 5.7e-29 131.0 98 59.2
Nn1g02221 Nelumbo nucifera HOM05D004938 ORTHO05D006035 7.5e-29 130.6 103 64.1
QL06p003549 Quercus lobata HOM05D004938 ORTHO05D006035 7.5e-29 130.6 101 65.3
Sabra10G0051800 Salix brachista HOM05D004938 ORTHO05D006035 7.5e-29 130.6 97 63.9
RcHm_v2.0_Chr4g0417151 Rosa chinensis HOM05D004938 ORTHO05D006035 9.8e-29 130.2 100 64.0
Zm00001eb303240 Zea mays HOM05D004938 ORTHO05D006035 9.8e-29 130.2 103 63.1
CDE10G1250 Ceratophyllum demersum HOM05D004938 ORTHO05D006035 1.7e-28 129.4 97 62.9
Ciclev10004613m.g Citrus clementina HOM05D004938 ORTHO05D006035 1.7e-28 129.4 97 63.9
MELO3C014494.2 Cucumis melo HOM05D004938 ORTHO05D006035 2.2e-28 129.0 98 57.1
CsaV3_6G038300 Cucumis sativus L. HOM05D004938 ORTHO05D006035 2.2e-28 129.0 98 57.1
VMungo1215G0596 Vigna mungo HOM05D004938 ORTHO05D006035 2.2e-28 129.0 98 63.3
Glyma.11G004000 Glycine max HOM05D004938 ORTHO05D006035 2.8e-28 128.6 99 63.6
MD16G1187600 Malus domestica HOM05D004938 ORTHO05D006035 2.8e-28 128.6 100 63.0
PGR004G1283 Punica granatum HOM05D004938 ORTHO05D006035 2.8e-28 128.6 96 64.6
Haze_00935 Corylus avellana HOM05D004938 ORTHO05D006035 3.7e-28 128.3 97 64.9
Lj1g0006253 Lotus japonicus HOM05D004938 ORTHO05D006035 3.7e-28 128.3 99 61.6
Lj3A741G39 Lonicera japonica HOM05D004938 ORTHO05D006035 6.3e-28 127.5 97 64.9
Manes.03G181800 Manihot esculenta HOM05D004938 ORTHO05D006035 6.3e-28 127.5 97 60.8
CSS0042089 Camellia sinensis var. sinensis HOM05D004938 ORTHO05D006035 8.3e-28 127.1 97 60.8
CiPaw.02G094500 Carya illinoinensis HOM05D004938 ORTHO05D006035 8.3e-28 127.1 97 64.9
AUR62038174 Chenopodium quinoa HOM05D004938 ORTHO05D006035 8.3e-28 127.1 97 63.9
Gohir.A02G029700 Gossypium hirsutum HOM05D004938 ORTHO05D006035 8.3e-28 127.1 101 59.4
Prupe.1G154400 Prunus persica HOM05D004938 ORTHO05D006035 8.3e-28 127.1 100 61.0
Rhsim04G0204400 Rhododendron simsii HOM05D004938 ORTHO05D006035 8.3e-28 127.1 103 58.3
arahy.Tifrunner.gnm1.ann1.AAS7XX Arachis hypogaea HOM05D004938 ORTHO05D006035 1.1e-27 126.7 97 63.9
arahy.Tifrunner.gnm1.ann1.CBXD69 Arachis hypogaea HOM05D004938 ORTHO05D006035 1.1e-27 126.7 97 63.9
Medtr5g005810 Medicago truncatula HOM05D004938 ORTHO05D006035 1.1e-27 126.7 97 60.8
Potri.010G091500 Populus trichocarpa HOM05D004938 ORTHO05D006035 1.1e-27 126.7 97 60.8
Dinv38414 Davidia involucrata HOM05D004938 ORTHO05D006035 1.4e-27 126.3 98 60.2
Sed0021968 Sechium edule HOM05D004938 ORTHO05D006035 1.4e-27 126.3 103 58.3
CAN.G69.12 Capsicum annuum HOM05D004938 ORTHO05D006035 1.8e-27 125.9 100 62.0
PSO170G2096 Papaver somniferum HOM05D004938 ORTHO05D006035 1.8e-27 125.9 98 65.3
PSO302G0105 Papaver somniferum HOM05D004938 ORTHO05D006035 1.8e-27 125.9 98 65.3
TPR.G38053 Trifolium pratense HOM05D004938 ORTHO05D006035 1.8e-27 125.9 97 60.8
Gorai.005G041400 Gossypium raimondii HOM05D004938 ORTHO05D006035 3.1e-27 125.2 101 59.4
Migut.N00168 Erythranthe guttata HOM05D004938 ORTHO05D006035 4.1e-27 124.8 100 60.0
Lalb_Chr09g0319711 Lupinus albus HOM05D004938 ORTHO05D006035 4.1e-27 124.8 99 60.6
Actinidia23495 Actinidia chinensis HOM05D004938 ORTHO05D006035 7.0e-27 124.0 97 60.8
PGSC0003DMG400008998 Solanum tuberosum HOM05D004938 ORTHO05D006035 7.0e-27 124.0 97 61.9
TWI73G0197 Tripterygium wilfordii HOM05D004938 ORTHO05D006035 7.0e-27 124.0 98 59.2
Psat4g211200 Pisum sativum HOM05D004938 ORTHO05D006035 9.1e-27 123.6 97 59.8
COL.COLO4_05833 Corchorus olitorius HOM05D004938 ORTHO05D006035 1.2e-26 123.2 97 60.8
AUR62043416 Chenopodium quinoa HOM05D004938 ORTHO05D006035 1.6e-26 122.9 98 64.3
TWI09G0224 Tripterygium wilfordii HOM05D004938 ORTHO05D006035 1.6e-26 122.9 98 58.2
Actinidia40164 Actinidia chinensis HOM05D004938 ORTHO05D006035 2.0e-26 122.5 97 60.8
Sabra08G0113800 Salix brachista HOM05D004938 ORTHO05D006035 2.0e-26 122.5 97 60.8
Solyc01g079720.3 Solanum lycopersicum HOM05D004938 ORTHO05D006035 2.0e-26 122.5 97 60.8
Sopen01g031490 Solanum pennellii HOM05D004938 ORTHO05D006035 2.0e-26 122.5 97 60.8
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 2.7e-26 122.1 97 59.8
EL10As3g23318 Beta vulgaris HOM05D004938 ORTHO05D006035 3.5e-26 121.7 97 61.9
CANSAT78G1749 Cannabis sativa HOM05D004938 ORTHO05D006035 3.5e-26 121.7 97 59.8
Duzib212G0302 Durio zibethinus HOM05D004938 ORTHO05D006035 3.5e-26 121.7 97 58.8
Ca_24383_v3 Cicer arietinum L. HOM05D004938 ORTHO05D006035 4.5e-26 121.3 97 59.8
Cc03_g03380 Coffea canephora HOM05D004938 ORTHO05D006035 5.9e-26 120.9 97 59.8
Eucgr.H03562 Eucalyptus grandis HOM05D004938 ORTHO05D006035 5.9e-26 120.9 96 61.5
Duzib151G0907 Durio zibethinus HOM05D004938 ORTHO05D006035 7.7e-26 120.6 97 58.8
Atru.chr4.2523 Acer truncatum HOM05D004938 ORTHO05D006035 1.0e-25 120.2 97 59.8
ATR0626G035 Amborella trichopoda HOM05D004938 ORTHO05D006035 1.0e-25 120.2 99 57.6
Nitab4.5_0000180g0010 Nicotiana tabacum HOM05D004938 ORTHO05D006035 1.0e-25 120.2 97 59.8
Peaxi162Scf01336g00121 Petunia axillaris HOM05D004938 ORTHO05D006035 1.3e-25 119.8 97 57.7
Sc13g0004170 Simmondsia chinensis HOM05D004938 ORTHO05D006035 1.3e-25 119.8 109 56.9
Os03g0809700 Oryza sativa ssp. japonica HOM05D004938 ORTHO05D006035 1.7e-25 119.4 102 59.8
Nitab4.5_0000144g0140 Nicotiana tabacum HOM05D004938 ORTHO05D006035 2.3e-25 119.0 97 58.8
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 2.3e-25 119.0 96 61.5
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 2.3e-25 119.0 96 61.5
arahy.Tifrunner.gnm1.ann1.7D2JYW Arachis hypogaea HOM05D004938 ORTHO05D006035 2.9e-25 118.6 102 57.8
arahy.Tifrunner.gnm1.ann1.LHV27P Arachis hypogaea HOM05D004938 ORTHO05D006035 2.9e-25 118.6 102 57.8
Thecc.04G226400 Theobroma cacao HOM05D004938 ORTHO05D006035 6.5e-25 117.5 97 56.7
Aa31LG11G10410 Aethionema arabicum HOM05D004938 ORTHO05D006035 1.1e-24 116.7 97 58.8
Gohir.A09G055200 Gossypium hirsutum HOM05D004938 ORTHO05D006035 1.9e-24 115.9 100 55.0
Gohir.D09G054100 Gossypium hirsutum HOM05D004938 ORTHO05D006035 1.9e-24 115.9 100 55.0
Gorai.006G053000 Gossypium raimondii HOM05D004938 ORTHO05D006035 1.9e-24 115.9 100 55.0
Ah.13g073990 Amaranthus hybridus HOM05D004938 ORTHO05D006035 2.5e-24 115.5 98 59.2
Thhalv10013082m.g Eutrema salsugineum HOM05D004938 ORTHO05D006035 3.3e-24 115.2 98 59.2
Ah.04g154350 Amaranthus hybridus HOM05D004938 ORTHO05D006035 4.2e-24 114.8 98 61.2
Cpa.g.sc147.28 Carica papaya HOM05D004938 ORTHO05D006035 5.5e-24 114.4 97 55.7
SGA_v2.0_scaffold10G05111 Striga asiatica HOM05D004938 ORTHO05D006035 5.5e-24 114.4 96 60.4
ECA236G0716 Erigeron canadensis HOM05D004938 ORTHO05D006035 7.2e-24 114.0 99 56.6
DCAR_030617 Daucus carota HOM05D004938 ORTHO05D006035 9.5e-24 113.6 102 52.0
Carub.0006s1761 Capsella rubella HOM05D004938 ORTHO05D006035 1.6e-23 112.8 99 59.6
THA.LOC104822301 Tarenaya hassleriana HOM05D004938 ORTHO05D006035 1.6e-23 112.8 98 56.1
THA.LOC104818812 Tarenaya hassleriana HOM05D004938 ORTHO05D006035 3.6e-23 111.7 102 56.9
AT5G19280 Arabidopsis thaliana HOM05D004938 ORTHO05D006035 1.4e-22 109.8 98 56.1
Sp6g25140 Schrenkiella parvula HOM05D004938 ORTHO05D006035 1.4e-22 109.8 98 56.1
AL6G30760 Arabidopsis lyrata HOM05D004938 ORTHO05D006035 3.0e-22 108.6 98 57.1
CARHR193690 Cardamine hirsuta HOM05D004938 ORTHO05D006035 3.0e-22 108.6 98 58.2
MSTRG.21840 Avicennia marina HOM05D004938 ORTHO05D006035 4.0e-22 108.2 100 53.0
BcaC04g18583 Brassica carinata HOM05D004938 ORTHO05D006035 4.0e-22 108.2 98 56.1
C09p57000 Brassica napus HOM05D004938 ORTHO05D006035 4.0e-22 108.2 98 56.1
BolC9t58564H Brassica oleracea HOM05D004938 ORTHO05D006035 4.0e-22 108.2 98 56.1
A10p20400 Brassica napus HOM05D004938 ORTHO05D006035 5.2e-22 107.8 98 56.1
BcaB08g36589 Brassica carinata HOM05D004938 ORTHO05D006035 6.8e-22 107.5 98 56.1
BraA10t44110Z Brassica rapa HOM05D004938 ORTHO05D006035 1.2e-21 106.7 98 55.1
Sed0019086 Sechium edule HOM05D004938 ORTHO05D006035 3.4e-21 105.1 100 50.0
HanXRQChr13g0400271 Helianthus annuus HOM05D004938 ORTHO05D006035 1.3e-20 103.2 99 49.5
A02p05430 Brassica napus HOM05D004938 ORTHO05D006035 1.1e-19 100.1 98 51.0
BraA02t05496Z Brassica rapa HOM05D004938 ORTHO05D006035 1.1e-19 100.1 98 51.0
BcaC03g13661 Brassica carinata HOM05D004938 ORTHO05D006035 4.1e-19 98.2 98 50.0
BNapus_Darmor_BZH_scaffold_38p02660 Brassica napus HOM05D004938 ORTHO05D006035 4.1e-19 98.2 98 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1070 Anthoceros agrestis HOM05D004938 ORTHO05D006035 7.0e-19 97.4 108 49.1
BolC2t06952H Brassica oleracea HOM05D004938 ORTHO05D006035 7.0e-19 97.4 98 50.0
SEGI_37854 Sequoiadendron giganteum HOM05D004938 ORTHO05D006035 7.0e-19 97.4 99 49.5
Mapoly0156s0019 Marchantia polymorpha HOM05D004938 ORTHO05D006035 3.5e-18 95.1 101 48.5
Hund12168 Selenicereus undatus HOM05D004938 ORTHO05D006035 7.8e-18 94.0 132 43.9
SMO119G0313 Selaginella moellendorffii HOM05D004938 ORTHO05D006035 8.6e-17 90.5 101 47.5
Pp3c22_2480 Physcomitrium patens HOM05D004938 ORTHO05D006035 6.1e-15 84.3 99 43.4
Lsat_1_v5_gn_9_79740 Lactuca sativa HOM05D004938 ORTHO05D006035 1.8e-14 82.8 81 50.6
Manes.15G025800 Manihot esculenta HOM05D004938 ORTHO05D006035 1.2e-13 80.1 56 64.3
CBR_g40443 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-13 79.7 99 43.4
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 5.8e-13 77.8 58 58.6
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 5.8e-13 77.8 58 58.6
Lj6C597G4 Lonicera japonica HOM05D000104 ORTHO05D006391 7.5e-13 77.4 56 62.5
Pp3c19_3420 Physcomitrium patens HOM05D004938 ORTHO05D006035 1.1e-11 73.6 96 42.7
Cre04.g212300 Chlamydomonas reinhardtii HOM05D004938 ORTHO05D006035 8.6e-09 63.9 118 30.5
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 8.0e-07 57.4 38 65.8
Gohir.D02G037500 Gossypium hirsutum HOM05D004938 ORTHO05D006035 1.4e-06 56.6 40 60.0
MCO07G413 Micromonas commoda HOM05D004938 ORTHO05D006035 4.0e-06 55.1 107 36.4
Sc19g0004370 Simmondsia chinensis HOM05D004938 ORTHO05D006035 6.8e-06 54.3 37 64.9


User provided reference genes

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