Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016689 Vanilla planifolia HOM05D005601 ORTHO05D007265 8.1e-37 156.4 69 100.0
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 3.9e-15 84.3 37 100.0
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 3.4e-11 71.2 56 55.4
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 2.9e-10 68.2 65 47.7
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 3.8e-10 67.8 37 73.0
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 3.8e-10 67.8 56 57.1
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 4.9e-10 67.4 37 73.0
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 6.4e-10 67.0 37 73.0
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 6.4e-10 67.0 37 73.0
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 6.4e-10 67.0 37 73.0
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 6.4e-10 67.0 37 73.0
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 8.4e-10 66.6 37 70.3
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 8.4e-10 66.6 37 70.3
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 1.1e-09 66.2 37 70.3
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 1.4e-09 65.9 37 70.3
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 1.4e-09 65.9 37 70.3
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 1.9e-09 65.5 37 70.3
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 2.4e-09 65.1 37 70.3
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 2.4e-09 65.1 37 67.6
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 2.4e-09 65.1 37 67.6
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 4.2e-09 64.3 37 67.6
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 4.2e-09 64.3 37 67.6
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 5.4e-09 63.9 37 67.6
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 5.4e-09 63.9 37 67.6
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 5.4e-09 63.9 37 67.6
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 7.1e-09 63.5 37 70.3
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 7.1e-09 63.5 37 70.3
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 9.3e-09 63.2 37 67.6
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.2e-08 62.8 36 66.7
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.2e-08 62.8 36 66.7
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.2e-08 62.8 36 66.7
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.2e-08 62.8 36 66.7
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.6e-08 62.4 37 64.9
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 1.6e-08 62.4 37 67.6
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 1.6e-08 62.4 37 67.6
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 1.6e-08 62.4 37 67.6
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 1.6e-08 62.4 37 64.9
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 2.1e-08 62.0 37 64.9
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 2.1e-08 62.0 43 55.8
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.1e-08 62.0 43 55.8
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.1e-08 62.0 43 55.8
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.1e-08 62.0 43 55.8
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 2.1e-08 62.0 37 64.9
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 2.1e-08 62.0 37 67.6
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 2.7e-08 61.6 37 64.9
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 2.7e-08 61.6 37 62.2
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 2.7e-08 61.6 37 67.6
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 2.7e-08 61.6 37 62.2
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 2.7e-08 61.6 37 64.9
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 4.6e-08 60.8 37 64.9
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 4.6e-08 60.8 37 64.9
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 4.6e-08 60.8 37 67.6
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 6.0e-08 60.5 37 64.9
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 6.0e-08 60.5 37 62.2
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 6.0e-08 60.5 37 67.6
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 6.0e-08 60.5 37 64.9
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 6.0e-08 60.5 37 64.9
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 7.9e-08 60.1 37 64.9
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 7.9e-08 60.1 37 62.2
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 1.0e-07 59.7 37 64.9
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.3e-07 59.3 37 59.5
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 1.3e-07 59.3 37 62.2
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 1.8e-07 58.9 37 62.2
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 1.8e-07 58.9 37 62.2
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 3.0e-07 58.2 37 62.2
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 3.0e-07 58.2 37 62.2
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 3.9e-07 57.8 37 59.5
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 3.9e-07 57.8 37 59.5
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 3.9e-07 57.8 37 62.2
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 5.1e-07 57.4 37 59.5
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 5.1e-07 57.4 37 56.8
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 5.1e-07 57.4 37 62.2
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 6.7e-07 57.0 37 62.2
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 8.7e-07 56.6 37 51.4
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 1.1e-06 56.2 37 59.5
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 1.1e-06 56.2 70 42.9
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 1.1e-06 56.2 37 56.8
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 1.1e-06 56.2 53 49.1
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 1.5e-06 55.8 37 59.5
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 1.5e-06 55.8 37 56.8
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 4.3e-06 54.3 37 56.8
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 4.3e-06 54.3 37 56.8
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 4.3e-06 54.3 37 56.8
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 4.3e-06 54.3 37 56.8
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 4.3e-06 54.3 37 56.8
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 4.3e-06 54.3 37 59.5
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 4.3e-06 54.3 33 57.6
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 4.3e-06 54.3 37 56.8
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 9.6e-06 53.1 37 54.1


User provided reference genes

Program Settings