Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 5.0e-90 334.3 159 100.0
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 1.4e-60 236.5 155 69.0
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 5.9e-59 231.1 159 64.8
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 1.0e-58 230.3 159 63.5
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 8.6e-58 227.3 159 62.9
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 1.9e-57 226.1 159 63.5
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 5.5e-57 224.6 159 63.5
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 7.2e-57 224.2 159 64.2
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 7.2e-57 224.2 159 63.5
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 9.5e-57 223.8 159 64.2
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 6.1e-56 221.1 159 63.5
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 8.0e-56 220.7 159 62.3
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 1.4e-55 219.9 159 61.6
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 1.8e-55 219.5 159 61.6
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 2.3e-55 219.2 159 62.9
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 8.9e-55 217.2 159 63.5
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 1.2e-54 216.9 159 62.3
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 1.5e-54 216.5 159 61.6
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 5.7e-54 214.5 158 62.7
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 7.5e-54 214.2 158 60.1
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 1.7e-53 213.0 159 59.1
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 1.7e-53 213.0 158 62.7
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 1.7e-53 213.0 158 62.7
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 2.2e-53 212.6 158 62.0
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 2.9e-53 212.2 159 61.0
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.9e-53 212.2 158 62.0
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 2.9e-53 212.2 160 61.2
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 3.7e-53 211.8 159 58.5
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 3.7e-53 211.8 154 63.0
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 3.7e-53 211.8 154 63.0
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 8.3e-53 210.7 158 61.4
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 8.3e-53 210.7 159 59.1
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 8.3e-53 210.7 159 59.1
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 1.1e-52 210.3 158 60.8
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.4e-52 209.9 159 59.7
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 1.4e-52 209.9 159 59.1
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 1.8e-52 209.5 156 60.9
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 2.4e-52 209.1 159 60.4
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 2.4e-52 209.1 157 59.2
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 7.0e-52 207.6 157 60.5
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 9.2e-52 207.2 159 59.7
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 1.2e-51 206.8 153 59.5
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 1.6e-51 206.5 159 61.0
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 2.7e-51 205.7 156 59.6
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 2.7e-51 205.7 156 59.6
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 2.7e-51 205.7 159 57.2
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 2.7e-51 205.7 152 61.2
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 3.5e-51 205.3 157 59.9
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 5.9e-51 204.5 158 58.9
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 7.8e-51 204.1 167 58.1
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 7.8e-51 204.1 157 58.6
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 1.0e-50 203.8 159 59.1
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 1.0e-50 203.8 159 58.5
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 3.9e-50 201.8 157 58.0
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 3.9e-50 201.8 203 49.8
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 5.0e-50 201.4 159 57.2
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 6.6e-50 201.1 153 59.5
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 8.6e-50 200.7 153 59.5
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 2.5e-49 199.1 157 57.3
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 3.3e-49 198.7 153 58.2
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 4.3e-49 198.4 158 56.3
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 7.3e-49 197.6 153 58.2
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 7.3e-49 197.6 153 58.2
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 7.3e-49 197.6 153 58.2
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 7.3e-49 197.6 158 57.6
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 1.6e-48 196.4 153 57.5
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 1.6e-48 196.4 153 57.5
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 1.6e-48 196.4 159 57.2
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 2.1e-48 196.1 153 58.2
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 3.6e-48 195.3 153 58.2
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 3.6e-48 195.3 157 56.1
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 3.6e-48 195.3 157 55.4
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 4.7e-48 194.9 153 57.5
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 4.7e-48 194.9 153 57.5
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 6.2e-48 194.5 153 58.8
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 1.8e-47 193.0 153 58.2
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 3.1e-47 192.2 159 54.1
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 3.1e-47 192.2 159 54.1
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 6.8e-47 191.0 159 57.2
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 1.4e-44 183.3 157 54.8
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 2.4e-44 182.6 153 56.2
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.0e-42 177.2 161 52.8
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 1.0e-42 177.2 160 52.5
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 2.3e-42 176.0 159 53.5
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 8.6e-42 174.1 158 46.8
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.1e-41 173.7 158 46.8
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 1.1e-41 173.7 190 45.3
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 1.5e-41 173.3 165 49.7
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 3.3e-41 172.2 154 52.6
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 1.1e-39 167.2 154 48.1
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 1.4e-36 156.8 121 61.2
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 5.4e-36 154.8 121 57.9
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 4.3e-33 145.2 156 45.5
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 4.0e-31 138.7 101 61.4
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 2.5e-25 119.4 152 39.5
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 2.8e-24 115.9 76 67.1
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 2.8e-24 115.9 152 39.5
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 1.8e-23 113.2 91 62.6
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 2.4e-23 112.8 91 61.5
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 2.4e-23 112.8 91 61.5
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 2.4e-23 112.8 91 61.5
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 2.4e-23 112.8 91 61.5
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 5.2e-23 111.7 145 39.3
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 1.5e-22 110.2 143 40.6
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 2.6e-22 109.4 84 59.5
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 9.9e-22 107.5 83 56.6
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.7e-21 106.7 81 60.5
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.9e-20 103.2 82 57.3
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.1e-19 99.8 93 49.5
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 3.5e-19 99.0 61 67.2
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 8.7e-18 94.4 78 61.5
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.1e-17 94.0 143 32.9
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.5e-17 93.6 82 53.7
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 8.1e-16 87.8 59 59.3
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 1.1e-15 87.4 158 31.6
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 4.4e-14 82.0 118 41.5
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 2.7e-11 72.8 144 32.6
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 5.1e-10 68.6 102 37.3
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 4.8e-08 62.0 74 41.9
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 6.9e-07 58.2 52 48.1
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 9.0e-07 57.8 80 37.5
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 9.0e-07 57.8 80 37.5


User provided reference genes

Program Settings