Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 3.3e-184 648.3 334 100.0
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 7.8e-77 291.6 167 86.8
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.1e-75 287.7 181 80.1
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.9e-75 287.0 181 79.6
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 2.5e-75 286.6 222 70.3
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 2.5e-75 286.6 283 58.7
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 4.3e-75 285.8 290 58.3
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 4.3e-75 285.8 206 72.8
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 5.6e-75 285.4 181 78.5
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 9.5e-75 284.6 172 83.1
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 9.5e-75 284.6 274 61.3
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 9.5e-75 284.6 247 64.4
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 9.5e-75 284.6 198 74.7
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.2e-74 284.3 271 61.3
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.6e-74 283.9 207 72.5
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.1e-74 283.5 271 61.3
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.1e-74 283.5 170 82.4
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 2.1e-74 283.5 168 84.5
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.8e-74 283.1 271 60.9
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 3.6e-74 282.7 163 85.9
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 4.7e-74 282.3 168 85.1
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 6.2e-74 282.0 245 63.7
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 6.2e-74 282.0 168 84.5
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.0e-73 281.2 328 54.3
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.0e-73 281.2 315 55.2
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.4e-73 280.8 229 65.1
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.8e-73 280.4 179 79.3
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.8e-73 280.4 167 84.4
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.8e-73 280.4 167 84.4
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 2.3e-73 280.0 311 54.7
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 2.3e-73 280.0 303 54.5
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 3.1e-73 279.6 201 72.6
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 3.1e-73 279.6 172 80.8
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 4.0e-73 279.3 188 76.1
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 4.0e-73 279.3 230 64.3
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 5.2e-73 278.9 311 54.0
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 8.9e-73 278.1 184 78.3
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 1.2e-72 277.7 252 62.7
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 1.2e-72 277.7 171 81.9
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.2e-72 277.7 229 67.7
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.2e-72 277.7 312 55.1
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 3.4e-72 276.2 168 81.5
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 3.4e-72 276.2 218 65.6
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 5.8e-72 275.4 311 54.7
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 5.8e-72 275.4 167 83.2
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 5.8e-72 275.4 217 68.2
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 7.5e-72 275.0 289 56.7
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 7.5e-72 275.0 213 69.5
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 7.5e-72 275.0 224 69.2
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 9.8e-72 274.6 184 77.2
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 9.8e-72 274.6 204 72.5
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 9.8e-72 274.6 168 82.1
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.3e-71 274.2 224 67.4
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.3e-71 274.2 218 65.1
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.7e-71 273.9 308 55.8
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 2.2e-71 273.5 302 55.3
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.2e-71 273.5 195 73.8
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 2.2e-71 273.5 284 58.1
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 2.9e-71 273.1 220 66.4
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 3.7e-71 272.7 302 54.6
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 4.9e-71 272.3 341 53.1
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.9e-71 272.3 168 81.5
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 4.9e-71 272.3 222 67.1
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.9e-71 272.3 195 74.4
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 4.9e-71 272.3 204 71.6
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 8.3e-71 271.6 227 66.1
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.1e-70 271.2 275 57.8
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 2.4e-70 270.0 195 72.3
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 4.1e-70 269.2 341 51.6
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 4.1e-70 269.2 378 47.4
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 4.1e-70 269.2 283 55.1
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 7.0e-70 268.5 287 57.1
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 7.0e-70 268.5 316 54.1
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.2e-70 268.1 308 53.6
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.2e-69 267.7 335 50.4
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.2e-69 267.7 319 53.0
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.6e-69 267.3 320 52.2
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.0e-69 266.9 206 69.9
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 6.0e-69 265.4 349 48.7
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 6.0e-69 265.4 344 50.3
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 6.0e-69 265.4 344 50.3
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.3e-68 264.2 301 53.8
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.3e-68 264.2 326 51.8
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.7e-68 263.8 300 55.0
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.0e-68 263.1 164 81.1
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 3.0e-68 263.1 329 49.5
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.9e-68 262.7 312 53.2
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 8.6e-68 261.5 271 56.1
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.9e-67 260.4 183 73.8
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 3.3e-67 259.6 183 73.2
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 3.3e-67 259.6 183 73.2
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 4.3e-67 259.2 243 59.3
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 9.5e-67 258.1 189 70.4
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.6e-66 257.3 279 55.2
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 2.1e-66 256.9 303 52.1
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 3.6e-66 256.1 334 49.7
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 4.7e-66 255.8 189 69.8
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 4.7e-66 255.8 303 53.1
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 6.2e-66 255.4 278 54.3
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.1e-66 255.0 276 57.2
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.4e-65 254.2 215 63.3
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 5.2e-65 252.3 279 54.8
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.2e-64 251.1 276 55.8
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 1.5e-64 250.8 284 53.5
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 1.3e-63 247.7 296 52.4
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 3.7e-63 246.1 277 52.7
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 9.2e-62 241.5 155 78.7
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 2.1e-58 230.3 295 51.5
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 8.9e-57 224.9 234 58.1
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.6e-53 214.2 128 82.0
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.6e-53 214.2 256 52.3
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 3.5e-53 213.0 127 82.7
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.0e-52 209.9 222 57.7
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 3.9e-52 209.5 243 53.1
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 8.9e-49 198.4 262 50.4
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.6e-45 187.6 268 48.5
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 4.6e-45 186.0 172 61.6
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 1.7e-44 184.1 278 45.7
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 2.6e-40 170.2 175 58.9
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 4.9e-39 166.0 124 71.0
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.0e-36 158.3 162 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.3e-36 157.9 218 47.2
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 2.5e-35 153.7 157 51.0
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.3e-35 152.9 307 39.7
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 1.3e-34 151.4 156 53.2
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.1e-34 150.6 124 63.7
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 5.3e-33 146.0 122 62.3
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 1.6e-29 134.4 213 42.7
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 2.1e-29 134.0 147 46.9
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.5e-24 117.9 80 75.0
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 1.1e-22 111.7 65 84.6
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 7.1e-22 109.0 150 48.7
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 3.9e-20 103.2 97 59.8
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.6e-16 90.5 249 35.3
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 3.8e-15 86.7 62 71.0
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 3.8e-15 86.7 62 71.0
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.1e-14 85.1 171 36.3
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 6.1e-13 79.3 99 46.5
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 6.1e-13 79.3 99 46.5
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 3.0e-12 77.0 47 76.6
Cfa022458 Carpinus fangiana HOM05D005375 ORTHO05D121393 2.9e-07 60.5 138 32.6
Mapoly0183s0015 Marchantia polymorpha HOM05D000230 ORTHO05D000176 8.5e-07 58.9 140 29.3
THA.LOC104803323 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 8.5e-07 58.9 139 25.9
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.9e-06 57.8 139 25.9
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 1.9e-06 57.8 139 25.9
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 1.9e-06 57.8 139 25.9
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 1.9e-06 57.8 131 29.8
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 1.9e-06 57.8 139 25.9
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 2.5e-06 57.4 139 25.9
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 2.5e-06 57.4 139 25.9
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 2.5e-06 57.4 139 25.9
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 3.2e-06 57.0 139 25.9
AL5G40990 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 4.2e-06 56.6 139 25.9
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 4.2e-06 56.6 139 25.9
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 4.2e-06 56.6 139 25.9
Sp3g23340 Schrenkiella parvula HOM05D000230 ORTHO05D000176 4.2e-06 56.6 138 29.0
BcaB02g07484 Brassica carinata HOM05D000230 ORTHO05D000176 5.5e-06 56.2 139 25.9
Zm00001eb163000 Zea mays HOM05D000230 ORTHO05D000176 5.5e-06 56.2 130 26.9
BcaC03g14717 Brassica carinata HOM05D000230 ORTHO05D000176 9.4e-06 55.5 138 26.1


User provided reference genes

Program Settings