Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 0.0e+00 2274.2 1162 100.0
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 1.1e-274 950.7 1157 44.4
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 2.2e-272 943.0 1159 45.8
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 1.3e-267 927.2 1160 45.3
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 1.6e-262 910.2 1159 43.9
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 1.0e-261 907.5 1160 44.3
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 4.7e-254 882.1 1163 44.1
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 2.6e-252 876.3 1159 44.0
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 3.4e-252 875.9 1156 42.8
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 1.1e-250 870.9 1157 43.3
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 2.0e-249 866.7 1161 43.0
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 5.0e-248 862.1 1159 43.0
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 5.0e-248 862.1 1158 43.3
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 6.5e-248 861.7 1157 42.4
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 6.1e-246 855.1 1159 43.1
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 6.8e-245 851.7 1185 42.5
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 7.5e-244 848.2 1159 43.2
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 1.7e-243 847.0 1177 42.3
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 3.7e-243 845.9 1159 41.8
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 3.7e-243 845.9 1152 42.2
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 4.9e-243 845.5 1159 42.1
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 1.1e-242 844.3 1148 40.8
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 1.7e-240 837.0 1230 41.9
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 1.2e-238 830.9 1197 42.3
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 2.8e-238 829.7 1269 40.0
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 5.2e-237 825.5 1175 41.5
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 2.0e-236 823.5 1175 41.4
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 2.9e-235 819.7 1164 41.8
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 3.7e-235 819.3 1163 40.7
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 8.3e-235 818.1 1175 41.2
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 3.2e-234 816.2 1162 41.4
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 1.6e-233 813.9 1162 40.5
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 3.5e-233 812.8 1157 40.6
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 1.0e-232 811.2 1151 39.7
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 5.0e-232 808.9 1167 41.0
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 8.6e-232 808.1 1158 40.5
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 1.5e-231 807.4 1158 40.6
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 3.3e-231 806.2 1158 40.2
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 2.8e-230 803.1 1223 40.2
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 2.8e-230 803.1 1158 40.2
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 4.7e-230 802.4 1165 41.0
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 6.2e-230 802.0 1165 40.7
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 8.0e-230 801.6 1160 40.4
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 1.0e-229 801.2 1154 39.9
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 1.2e-228 797.7 1162 41.7
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 1.5e-228 797.3 1155 40.0
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 2.0e-228 797.0 1158 40.3
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 4.4e-228 795.8 1168 41.1
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 7.5e-228 795.0 1160 40.9
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 6.4e-227 792.0 1161 39.8
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 8.3e-227 791.6 1159 39.3
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 5.4e-226 788.9 1156 40.1
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 1.2e-225 787.7 1162 40.4
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 2.3e-224 783.5 1164 39.6
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 3.0e-224 783.1 1170 39.1
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 5.6e-223 778.9 1163 40.5
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 6.4e-219 765.4 1157 40.2
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 1.4e-218 764.2 1137 39.1
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 2.7e-217 760.0 1142 39.2
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 7.8e-217 758.4 1137 38.6
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 4.7e-214 749.2 1160 39.4
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 8.1e-214 748.4 1224 37.7
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 5.2e-213 745.7 1160 40.1
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 2.9e-211 740.0 1161 38.3
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.4e-210 737.6 1177 38.2
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 7.8e-209 731.9 1176 38.2
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 7.8e-209 731.9 1191 38.5
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 1.0e-208 731.5 1232 38.2
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.7e-208 730.7 1191 38.4
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 1.1e-207 728.0 1162 38.9
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.5e-207 726.9 1191 38.4
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 4.7e-206 722.6 1226 37.4
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 2.4e-205 720.3 1229 36.4
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 2.0e-204 717.2 1225 37.2
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 2.2e-203 713.8 1240 36.3
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 4.6e-201 706.1 1223 37.1
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 3.9e-200 703.0 1226 37.4
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 7.3e-199 698.7 1223 36.1
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 4.8e-198 696.0 1231 37.0
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 4.8e-198 696.0 1173 37.4
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 1.1e-194 684.9 1224 36.1
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 1.6e-193 681.0 1156 37.0
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 2.1e-193 680.6 1162 37.3
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 1.1e-183 648.3 1232 35.1
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 2.1e-174 617.5 1252 34.7
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.8e-157 561.2 755 43.0
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 1.1e-151 542.0 876 37.3
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 7.4e-151 539.3 619 46.2
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 2.9e-147 527.3 634 46.2
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 1.5e-138 498.4 634 43.7
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 1.5e-130 471.9 561 47.4
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 4.9e-126 456.8 497 47.3
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 7.0e-117 426.4 874 33.3
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.6e-116 425.2 393 55.2
HPP92_014933 Vanilla planifolia HOM05D003586 ORTHO05D004036 2.3e-115 421.4 217 98.2
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 4.3e-114 417.2 806 34.7
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 7.5e-111 406.4 640 37.8
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 6.4e-110 403.3 1175 27.2
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 2.0e-103 381.7 1177 27.6
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 4.9e-102 377.1 1180 25.6
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 9.2e-101 372.9 762 33.3
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 6.0e-100 370.2 1148 26.6
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 2.1e-97 361.7 356 50.3
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 2.7e-92 344.7 1181 26.8
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 5.1e-91 340.5 672 34.2
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 8.7e-91 339.7 825 31.3
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 1.5e-90 339.0 827 30.8
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 1.9e-90 338.6 824 30.8
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 5.6e-90 337.0 828 30.8
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 5.6e-90 337.0 823 31.1
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 1.6e-89 335.5 828 30.7
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 3.6e-89 334.3 668 34.3
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 1.4e-85 322.4 308 53.6
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.0e-83 316.2 161 97.5
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 2.5e-82 311.6 400 42.0
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 5.8e-79 300.4 1188 24.8
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 3.8e-78 297.7 390 43.8
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 2.7e-60 238.4 520 33.3
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 5.7e-58 230.7 196 58.7
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 2.2e-57 228.8 364 39.6
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 3.8e-54 218.0 423 34.5
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 2.2e-49 202.2 556 28.8
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 1.2e-47 196.4 219 49.3
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 1.2e-47 196.4 219 49.3
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 8.8e-43 180.3 616 25.5
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 2.6e-39 168.7 394 33.8
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 1.9e-37 162.5 406 30.8
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 8.8e-35 153.7 381 30.2
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 4.0e-27 128.3 197 41.6
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 6.7e-27 127.5 182 37.9
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 2.0e-26 125.9 335 29.3
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 3.3e-26 125.2 182 38.5
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 4.5e-23 114.8 225 34.7
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 2.4e-16 92.4 261 29.1
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 1.1e-13 83.6 342 21.3
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 3.3e-13 82.0 50 70.0
SMO358G0141 Selaginella moellendorffii HOM05D003586 ORTHO05D377094 1.1e-08 67.0 113 36.3
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 1.8e-08 66.2 41 70.7
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 5.4e-08 64.7 41 68.3
SEGI_27748 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 5.4e-08 64.7 147 29.9
THA.LOC104803129 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 2.7e-07 62.4 51 60.8
VMungo0251G1425 Vigna mungo HOM05D003586 ORTHO05D004036 7.8e-07 60.8 111 26.1
SMO142G0017 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 6.6e-06 57.8 217 23.5


User provided reference genes

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