Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.7e-84 313.9 153 100.0
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.7e-84 313.9 153 100.0
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 1.0e-79 300.1 150 96.0
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.0e-79 300.1 150 96.0
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.3e-79 299.7 150 95.3
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 2.9e-79 298.5 150 95.3
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.4e-78 296.2 150 94.0
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 4.2e-78 294.7 150 93.3
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 4.2e-78 294.7 149 95.3
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 7.2e-78 293.9 151 95.4
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 9.4e-78 293.5 149 94.6
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 9.4e-78 293.5 149 94.6
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 9.4e-78 293.5 149 94.0
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.2e-77 293.1 153 92.8
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-77 293.1 149 94.6
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-77 293.1 149 94.6
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.2e-77 293.1 149 94.6
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 147 94.6
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 147 94.6
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 146 94.5
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 150 93.3
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 150 93.3
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 1.6e-77 292.7 146 94.5
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 2.1e-77 292.4 146 95.9
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 2.1e-77 292.4 149 94.0
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.1e-77 292.4 149 94.0
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 2.1e-77 292.4 148 92.6
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 3.6e-77 291.6 146 95.2
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 3.6e-77 291.6 149 94.0
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.6e-77 291.2 149 93.3
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 6.1e-77 290.8 146 95.2
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 6.1e-77 290.8 151 93.4
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 6.1e-77 290.8 146 95.2
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 7.9e-77 290.4 153 90.8
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 7.9e-77 290.4 150 94.7
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 7.9e-77 290.4 151 93.4
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 7.9e-77 290.4 151 93.4
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 7.9e-77 290.4 151 93.4
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 7.9e-77 290.4 151 93.4
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 7.9e-77 290.4 151 93.4
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 7.9e-77 290.4 151 93.4
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 7.9e-77 290.4 146 93.8
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 7.9e-77 290.4 147 93.9
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 7.9e-77 290.4 151 93.4
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 7.9e-77 290.4 146 94.5
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.4e-76 289.7 146 93.2
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 1.4e-76 289.7 152 93.4
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 1.4e-76 289.7 148 91.9
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 1.4e-76 289.7 146 95.2
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.4e-76 289.7 152 92.1
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 1.4e-76 289.7 151 92.7
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 1.4e-76 289.7 146 93.2
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 1.4e-76 289.7 146 93.2
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.4e-76 289.7 146 94.5
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 1.8e-76 289.3 148 91.9
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.8e-76 289.3 151 94.7
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.8e-76 289.3 151 92.7
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 2.3e-76 288.9 146 94.5
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 2.3e-76 288.9 146 93.8
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 3.0e-76 288.5 149 91.9
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 91.4
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 5.1e-76 287.7 146 93.8
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 5.1e-76 287.7 146 93.8
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 5.1e-76 287.7 151 91.4
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 5.1e-76 287.7 146 92.5
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 5.1e-76 287.7 146 93.8
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 5.1e-76 287.7 152 91.4
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 5.1e-76 287.7 145 93.8
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 6.7e-76 287.3 146 93.8
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 6.7e-76 287.3 146 93.8
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 6.7e-76 287.3 146 93.8
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 6.7e-76 287.3 143 96.5
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 6.7e-76 287.3 146 93.8
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 8.8e-76 287.0 146 92.5
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 8.8e-76 287.0 146 93.8
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 1.5e-75 286.2 148 91.2
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.5e-75 286.2 146 93.8
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.0e-75 285.8 149 92.6
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 2.0e-75 285.8 143 93.7
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 2.0e-75 285.8 143 93.7
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.0e-75 285.8 143 95.8
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.0e-75 285.8 145 92.4
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 3.3e-75 285.0 152 90.8
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 4.3e-75 284.6 146 91.8
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 7.4e-75 283.9 143 93.0
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.3e-74 283.1 152 89.5
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.7e-74 282.7 150 90.0
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.7e-74 282.7 150 90.0
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 1.7e-74 282.7 150 89.3
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 2.2e-74 282.3 149 89.9
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 3.7e-74 281.6 149 89.9
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.8e-74 281.2 146 91.8
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.8e-74 281.2 146 91.8
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 6.3e-74 280.8 149 90.6
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 6.3e-74 280.8 150 88.0
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 6.3e-74 280.8 149 89.3
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 8.2e-74 280.4 146 91.1
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 8.2e-74 280.4 146 91.1
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 8.2e-74 280.4 150 87.3
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 1.1e-73 280.0 146 91.1
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.4e-73 279.6 149 90.6
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.4e-73 279.6 151 89.4
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 3.1e-73 278.5 150 87.3
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 5.3e-73 277.7 153 87.6
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 6.9e-73 277.3 146 90.4
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 6.9e-73 277.3 146 90.4
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 1.5e-72 276.2 146 89.7
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 1.5e-72 276.2 146 89.7
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 4.5e-72 274.6 149 87.9
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 1.0e-71 273.5 146 91.8
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.3e-71 273.1 144 89.6
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 1.1e-70 270.0 154 85.7
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.1e-70 270.0 143 90.9
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 6.1e-69 264.2 138 90.6
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 3.9e-68 261.5 138 89.1
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 7.4e-67 257.3 132 94.7
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 9.7e-67 256.9 131 92.4
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 2.8e-66 255.4 131 91.6
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.8e-66 255.4 129 93.0
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 4.8e-66 254.6 131 93.1
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 4.8e-66 254.6 154 79.9
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 4.8e-66 254.6 146 85.6
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 4.8e-66 254.6 130 91.5
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 8.2e-66 253.8 130 90.8
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.1e-65 253.4 142 88.0
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.1e-65 253.4 127 94.5
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 1.1e-65 253.4 127 94.5
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 1.1e-65 253.4 127 93.7
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-65 253.1 154 79.9
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.8e-65 252.7 132 90.2
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 3.1e-65 251.9 124 95.2
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 5.3e-65 251.1 131 91.6
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 7.0e-65 250.8 129 89.9
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 7.0e-65 250.8 131 89.3
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 9.1e-65 250.4 129 89.9
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 9.1e-65 250.4 129 92.2
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.2e-64 250.0 129 90.7
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 2.6e-64 248.8 134 88.8
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 8.5e-63 243.8 146 82.9
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 8.5e-63 243.8 141 83.0
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.1e-62 243.4 145 82.1
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.5e-62 243.0 130 89.2
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 9.4e-62 240.4 147 72.8
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 8.0e-61 237.3 144 73.6
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 4.1e-57 224.9 146 71.9
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 2.7e-56 222.2 149 75.2
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 9.4e-54 213.8 190 60.5
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 4.0e-52 208.4 115 87.0
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.2e-51 206.8 143 74.1
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 1.3e-50 203.4 119 80.7
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 3.1e-49 198.7 102 93.1
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.2e-48 196.8 102 91.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 4.5e-48 194.9 102 89.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 8.5e-47 190.7 115 75.7
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.4e-43 178.3 87 94.3
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 3.1e-41 172.2 114 78.9
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 1.0e-39 167.2 82 93.9
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.6e-39 164.5 146 62.3
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 5.6e-38 161.4 82 89.0
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 4.7e-37 158.3 80 93.8
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.8e-33 146.4 72 97.2
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 6.6e-31 137.9 74 87.8
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.0e-28 128.6 71 87.3
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.5e-27 126.7 71 87.3
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 7.5e-27 124.4 71 85.9
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.5e-24 115.5 77 74.0
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 2.1e-16 89.7 44 97.7
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.7e-15 86.7 46 89.1
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.8e-12 76.6 74 52.7


User provided reference genes

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