Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014741 Vanilla planifolia HOM05D003356 ORTHO05D004362 2.3e-301 1038.1 530 100.0
Nn1g06580 Nelumbo nucifera HOM05D003356 ORTHO05D004362 1.3e-131 474.2 457 56.5
Zm00001eb198690 Zea mays HOM05D003356 ORTHO05D004362 1.6e-129 467.2 457 54.5
TAR624G0482 Trochodendron aralioides HOM05D003356 ORTHO05D004362 2.1e-129 466.8 457 55.4
Zm00001eb065890 Zea mays HOM05D003356 ORTHO05D004362 1.1e-128 464.5 457 55.4
ATR0680G284 Amborella trichopoda HOM05D003356 ORTHO05D004362 1.4e-128 464.2 457 54.3
Os04g0681600 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 1.8e-128 463.8 457 54.9
GSVIVG01014366001 Vitis vinifera HOM05D003356 ORTHO05D004362 1.8e-128 463.8 457 55.1
Cfa020557 Carpinus fangiana HOM05D003356 ORTHO05D004362 4.0e-128 462.6 457 55.1
Os04g0681400 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 5.3e-128 462.2 457 54.9
Hma1.2p1_0148F.1_g066130 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 2.6e-127 459.9 457 54.9
Gohir.D11G296752 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.7e-126 457.2 457 55.6
Gorai.007G321200 Gossypium raimondii HOM05D003356 ORTHO05D004362 1.7e-126 457.2 457 55.6
CiPaw.11G172300 Carya illinoinensis HOM05D003356 ORTHO05D004362 2.2e-126 456.8 457 54.5
Gohir.A11G283100 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.9e-125 453.8 457 55.1
QL08p020494 Quercus lobata HOM05D003356 ORTHO05D004362 3.2e-125 453.0 470 54.0
Thecc.07G080500 Theobroma cacao HOM05D003356 ORTHO05D004362 3.2e-125 453.0 457 54.5
Sc03g0009930 Simmondsia chinensis HOM05D003356 ORTHO05D004362 2.1e-124 450.3 457 54.0
Manes.03G112000 Manihot esculenta HOM05D003356 ORTHO05D004362 3.5e-124 449.5 457 53.4
Eucgr.F01103 Eucalyptus grandis HOM05D003356 ORTHO05D004362 6.0e-124 448.7 457 53.6
Psat4g135280 Pisum sativum HOM05D003356 ORTHO05D004362 6.0e-124 448.7 457 53.6
Prupe.4G183900 Prunus persica HOM05D003356 ORTHO05D004362 7.9e-124 448.4 457 54.5
COL.COLO4_09421 Corchorus olitorius HOM05D003356 ORTHO05D004362 1.8e-123 447.2 471 53.3
MD11G1246200 Malus domestica HOM05D003356 ORTHO05D004362 3.0e-123 446.4 457 54.3
Haze_09456 Corylus avellana HOM05D003356 ORTHO05D004362 3.9e-123 446.0 457 53.6
CANSAT56G0567 Cannabis sativa HOM05D003356 ORTHO05D004362 6.7e-123 445.3 457 53.4
TAR626G0399 Trochodendron aralioides HOM05D003356 ORTHO05D004362 8.7e-123 444.9 435 55.9
Ca_20647_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 1.5e-122 444.1 457 53.0
Ciclev10007637m.g Citrus clementina HOM05D003356 ORTHO05D004362 1.5e-122 444.1 457 52.5
Potri.011G121100 Populus trichocarpa HOM05D003356 ORTHO05D004362 1.5e-122 444.1 457 53.2
Atru.chr2.2711 Acer truncatum HOM05D003356 ORTHO05D004362 3.3e-122 443.0 457 52.1
Dinv07551 Davidia involucrata HOM05D003356 ORTHO05D004362 3.3e-122 443.0 457 53.6
HPP92_028116 Vanilla planifolia HOM05D003356 ORTHO05D004362 3.3e-122 443.0 409 59.7
Aqoxy1G02485 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 9.6e-122 441.4 455 53.0
CDE06G0677 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 9.6e-122 441.4 457 53.2
Gorai.002G072200 Gossypium raimondii HOM05D003356 ORTHO05D004362 9.6e-122 441.4 453 53.6
Manes.15G086100 Manihot esculenta HOM05D003356 ORTHO05D004362 9.6e-122 441.4 457 53.6
Actinidia35254 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.3e-121 441.0 457 53.4
MSTRG.15221 Avicennia marina HOM05D003356 ORTHO05D004362 1.6e-121 440.7 457 54.0
CDE04G3674 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 1.6e-121 440.7 452 54.0
PGR083G2041 Punica granatum HOM05D003356 ORTHO05D004362 1.6e-121 440.7 457 53.2
Solyc07g063230.3 Solanum lycopersicum HOM05D003356 ORTHO05D004362 1.6e-121 440.7 457 53.6
Sopen07g031420 Solanum pennellii HOM05D003356 ORTHO05D004362 1.6e-121 440.7 457 53.6
Dinv04314 Davidia involucrata HOM05D003356 ORTHO05D004362 2.8e-121 439.9 457 53.6
Gohir.A01G065000 Gossypium hirsutum HOM05D003356 ORTHO05D004362 3.7e-121 439.5 453 53.2
Medtr8g059125 Medicago truncatula HOM05D003356 ORTHO05D004362 4.8e-121 439.1 457 52.3
Actinidia01887 Actinidia chinensis HOM05D003356 ORTHO05D004362 6.2e-121 438.7 457 52.1
PSO541G1226 Papaver somniferum HOM05D003356 ORTHO05D004362 8.2e-121 438.3 453 53.6
Lj3g0021569 Lotus japonicus HOM05D003356 ORTHO05D004362 1.1e-120 438.0 457 53.6
PSO675G9024 Papaver somniferum HOM05D003356 ORTHO05D004362 1.4e-120 437.6 453 53.4
PGSC0003DMG400012423 Solanum tuberosum HOM05D003356 ORTHO05D004362 1.8e-120 437.2 457 53.0
MSTRG.6840 Avicennia marina HOM05D003356 ORTHO05D004362 2.4e-120 436.8 457 53.6
CAN.G162.68 Capsicum annuum HOM05D003356 ORTHO05D004362 3.1e-120 436.4 457 53.2
ClCG11G018140 Citrullus lanatus HOM05D003356 ORTHO05D004362 4.0e-120 436.0 434 53.9
ECA236G2009 Erigeron canadensis HOM05D003356 ORTHO05D004362 4.0e-120 436.0 459 52.9
Gohir.D01G052400 Gossypium hirsutum HOM05D003356 ORTHO05D004362 5.3e-120 435.6 453 52.8
MBI17_g30525_MAGBIO Magnolia biondii HOM05D003356 ORTHO05D004362 5.3e-120 435.6 466 53.4
Phvul.011G150000 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 6.9e-120 435.3 457 52.3
TPR.G31511 Trifolium pratense HOM05D003356 ORTHO05D004362 6.9e-120 435.3 457 51.6
VMungo1127G2063 Vigna mungo HOM05D003356 ORTHO05D004362 6.9e-120 435.3 457 52.1
Cpa.g.sc80.47 Carica papaya HOM05D003356 ORTHO05D004362 9.0e-120 434.9 457 52.1
CsaV3_4G033780 Cucumis sativus L. HOM05D003356 ORTHO05D004362 9.0e-120 434.9 457 51.2
Oeu005419.1 Olea europaea HOM05D003356 ORTHO05D004362 1.2e-119 434.5 457 53.4
RcHm_v2.0_Chr5g0034311 Rosa chinensis HOM05D003356 ORTHO05D004362 1.2e-119 434.5 457 52.3
EL10Ac4g08143 Beta vulgaris HOM05D003356 ORTHO05D004362 1.5e-119 434.1 466 52.8
Glyma.13G278300 Glycine max HOM05D003356 ORTHO05D004362 2.6e-119 433.3 456 52.0
vmacro09540 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 2.6e-119 433.3 475 52.0
FvH4_3g20420 Fragaria vesca HOM05D003356 ORTHO05D004362 3.4e-119 433.0 457 52.1
Sabra11G0105100 Salix brachista HOM05D003356 ORTHO05D004362 5.8e-119 432.2 460 52.2
Peaxi162Scf00069g01337 Petunia axillaris HOM05D003356 ORTHO05D004362 7.6e-119 431.8 476 51.9
Nitab4.5_0001551g0030 Nicotiana tabacum HOM05D003356 ORTHO05D004362 1.7e-118 430.6 454 52.2
Sed0005873 Sechium edule HOM05D003356 ORTHO05D004362 1.7e-118 430.6 457 51.2
FAN11G2849 Fragaria x ananassa HOM05D003356 ORTHO05D004362 2.9e-118 429.9 471 51.2
CSS0014763 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 3.8e-118 429.5 457 53.2
FAN16G2459 Fragaria x ananassa HOM05D003356 ORTHO05D004362 1.1e-117 427.9 464 50.9
Hma1.2p1_0881F.1_g232075 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 1.1e-117 427.9 457 51.2
SGA_v2.0_scaffold34G13734 Striga asiatica HOM05D003356 ORTHO05D004362 1.1e-117 427.9 458 52.6
HanXRQChr15g0494641 Helianthus annuus HOM05D003356 ORTHO05D004362 1.4e-117 427.6 459 51.9
Rhsim06G0197100 Rhododendron simsii HOM05D003356 ORTHO05D004362 1.4e-117 427.6 468 53.0
FAN25G0303 Fragaria x ananassa HOM05D003356 ORTHO05D004362 1.9e-117 427.2 471 50.5
Glyma.12G150800 Glycine max HOM05D003356 ORTHO05D004362 1.9e-117 427.2 457 51.6
FAN21G0641 Fragaria x ananassa HOM05D003356 ORTHO05D004362 3.2e-117 426.4 471 50.3
Nitab4.5_0003688g0040 Nicotiana tabacum HOM05D003356 ORTHO05D004362 3.2e-117 426.4 454 51.8
Aqoxy4G00927 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 4.2e-117 426.0 467 52.5
HanXRQChr11g0328451 Helianthus annuus HOM05D003356 ORTHO05D004362 4.2e-117 426.0 459 51.4
Migut.M00849 Erythranthe guttata HOM05D003356 ORTHO05D004362 7.1e-117 425.2 457 52.5
AT3G15380 Arabidopsis thaliana HOM05D003356 ORTHO05D004362 9.3e-117 424.9 458 52.2
SalBow2G3561 Salvia bowleyana HOM05D003356 ORTHO05D004362 1.2e-116 424.5 460 53.3
Rhsim04G0020100 Rhododendron simsii HOM05D003356 ORTHO05D004362 1.6e-116 424.1 457 52.1
AL3G27880 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 3.5e-116 422.9 458 52.0
THA.LOC104818067 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 6.0e-116 422.2 457 50.3
CARHR090420 Cardamine hirsuta HOM05D003356 ORTHO05D004362 1.0e-115 421.4 458 51.7
Glyma.12G223200 Glycine max HOM05D003356 ORTHO05D004362 1.0e-115 421.4 457 51.0
arahy.Tifrunner.gnm1.ann1.YA7R1N Arachis hypogaea HOM05D003356 ORTHO05D004362 2.3e-115 420.2 477 49.3
Phvul.005G082401 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 2.3e-115 420.2 457 50.5
vmacro11852 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 2.3e-115 420.2 457 52.3
Sp3g13630 Schrenkiella parvula HOM05D003356 ORTHO05D004362 3.0e-115 419.9 458 50.9
Carub.0003s1510 Capsella rubella HOM05D003356 ORTHO05D004362 3.9e-115 419.5 458 51.5
Psat5g244680 Pisum sativum HOM05D003356 ORTHO05D004362 3.9e-115 419.5 457 50.3
Ah.06g183980 Amaranthus hybridus HOM05D003356 ORTHO05D004362 5.1e-115 419.1 457 52.1
THA.LOC104810480 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 6.7e-115 418.7 457 49.9
arahy.Tifrunner.gnm1.ann1.YHI9TY Arachis hypogaea HOM05D003356 ORTHO05D004362 8.7e-115 418.3 477 49.3
C05p51790 Brassica napus HOM05D003356 ORTHO05D004362 8.7e-115 418.3 460 51.1
BolC3t17043H Brassica oleracea HOM05D003356 ORTHO05D004362 1.5e-114 417.5 460 51.1
BolC5t33865H Brassica oleracea HOM05D003356 ORTHO05D004362 1.5e-114 417.5 460 51.1
Lalb_Chr01g0006491 Lupinus albus HOM05D003356 ORTHO05D004362 1.5e-114 417.5 457 50.8
A05p34020 Brassica napus HOM05D003356 ORTHO05D004362 1.9e-114 417.2 460 51.1
BraA05t22224Z Brassica rapa HOM05D003356 ORTHO05D004362 1.9e-114 417.2 460 51.1
Hund22933 Selenicereus undatus HOM05D003356 ORTHO05D004362 4.3e-114 416.0 512 48.6
BcaB06g29569 Brassica carinata HOM05D003356 ORTHO05D004362 5.7e-114 415.6 459 51.0
A03p39290 Brassica napus HOM05D003356 ORTHO05D004362 7.4e-114 415.2 461 51.2
C03p47660 Brassica napus HOM05D003356 ORTHO05D004362 7.4e-114 415.2 460 51.3
Lsat_1_v5_gn_7_105200 Lactuca sativa HOM05D003356 ORTHO05D004362 7.4e-114 415.2 463 50.5
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 1.3e-113 414.5 461 51.2
SGA_v2.0_scaffold73G24287 Striga asiatica HOM05D003356 ORTHO05D004362 1.6e-113 414.1 503 48.1
CSS0023849 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 2.2e-113 413.7 457 51.4
arahy.Tifrunner.gnm1.ann1.4T1P38 Arachis hypogaea HOM05D003356 ORTHO05D004362 6.3e-113 412.1 484 48.3
Lj1A846T66 Lonicera japonica HOM05D003356 ORTHO05D004362 1.1e-112 411.4 517 47.2
Glyma.06G246600 Glycine max HOM05D003356 ORTHO05D004362 1.8e-112 410.6 457 49.9
Thhalv10020171m.g Eutrema salsugineum HOM05D003356 ORTHO05D004362 3.1e-112 409.8 461 50.3
arahy.Tifrunner.gnm1.ann1.1CAS5W Arachis hypogaea HOM05D003356 ORTHO05D004362 2.0e-111 407.1 484 47.9
MD03G1225500 Malus domestica HOM05D003356 ORTHO05D004362 2.0e-111 407.1 457 51.0
Actinidia05623 Actinidia chinensis HOM05D003356 ORTHO05D004362 7.6e-111 405.2 429 51.7
Medtr2g079490 Medicago truncatula HOM05D003356 ORTHO05D004362 9.3e-109 398.3 456 49.3
DCAR_004079 Daucus carota HOM05D003356 ORTHO05D004362 2.3e-107 393.7 467 48.4
Aa31LG8G2610 Aethionema arabicum HOM05D003356 ORTHO05D004362 1.1e-106 391.3 460 49.6
Lj3g0006216 Lotus japonicus HOM05D003356 ORTHO05D004362 3.7e-105 386.3 457 48.8
Ca_01833_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 5.3e-104 382.5 457 48.4
DCAR_019547 Daucus carota HOM05D003356 ORTHO05D004362 1.1e-101 374.8 469 46.3
AUR62034265 Chenopodium quinoa HOM05D003356 ORTHO05D004362 1.9e-101 374.0 457 47.7
Ah.04g165130 Amaranthus hybridus HOM05D003356 ORTHO05D004362 2.5e-101 373.6 457 48.6
CSS0019237 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 5.5e-101 372.5 457 47.7
Hund02220 Selenicereus undatus HOM05D003356 ORTHO05D004362 9.4e-101 371.7 508 43.7
BcaC01g03876 Brassica carinata HOM05D003356 ORTHO05D004362 2.3e-99 367.1 429 49.2
BcaC05g28976 Brassica carinata HOM05D003356 ORTHO05D004362 5.1e-99 365.9 380 52.6
Duzib213G0462 Durio zibethinus HOM05D003356 ORTHO05D004362 1.1e-98 364.8 409 51.8
HanXRQChr15g0482461 Helianthus annuus HOM05D003356 ORTHO05D004362 5.7e-98 362.5 460 44.6
unitig_37.g12574 Utricularia gibba HOM05D003356 ORTHO05D004362 6.3e-97 359.0 457 46.8
Lsat_1_v5_gn_7_18881 Lactuca sativa HOM05D003356 ORTHO05D004362 1.1e-96 358.2 456 44.1
Lj8C157T5 Lonicera japonica HOM05D003356 ORTHO05D004362 1.0e-94 351.7 457 45.7
AUR62029372 Chenopodium quinoa HOM05D003356 ORTHO05D004362 9.4e-93 345.1 430 47.4
MELO3C016707.2 Cucumis melo HOM05D003356 ORTHO05D004362 9.1e-88 328.6 446 43.3
Actinidia18761 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.7e-86 324.3 286 59.1
Cc05_g12210 Coffea canephora HOM05D003356 ORTHO05D004362 9.8e-74 282.0 236 60.6
Dinv08305 Davidia involucrata HOM05D003356 ORTHO05D004362 1.3e-73 281.6 296 52.0
Pp3c9_13290 Physcomitrium patens HOM05D003356 ORTHO05D004362 3.1e-72 276.9 458 36.0
ECA236G3466 Erigeron canadensis HOM05D003356 ORTHO05D004362 4.0e-67 260.0 272 50.7
Lalb_Chr19g0134291 Lupinus albus HOM05D003356 ORTHO05D004362 1.5e-66 258.1 235 55.7
SEGI_21847 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 6.6e-62 242.7 263 47.9
Mapoly0001s0233 Marchantia polymorpha HOM05D003356 ORTHO05D004362 1.9e-61 241.1 349 39.8
Lalb_Chr25g0286481 Lupinus albus HOM05D003356 ORTHO05D004362 6.8e-59 232.6 207 56.0
CBR_g34641 Chara braunii HOM05D003356 ORTHO05D004362 1.6e-52 211.5 472 31.1
AagrBONN_evm.TU.Sc2ySwM_228.601 Anthoceros agrestis HOM05D003356 ORTHO05D004362 5.2e-51 206.5 341 35.8
Pp3c13_16790 Physcomitrium patens HOM05D003356 ORTHO05D004362 6.8e-51 206.1 472 30.5
CBR_g50441 Chara braunii HOM05D003356 ORTHO05D004362 4.9e-49 199.9 454 30.4
CBR_g34644 Chara braunii HOM05D003356 ORTHO05D004362 1.0e-46 192.2 454 30.8
HPP92_020870 Vanilla planifolia HOM05D003356 ORTHO05D004362 1.7e-41 174.9 213 51.2
Lalb_Chr19g0134281 Lupinus albus HOM05D003356 ORTHO05D004362 6.4e-41 172.9 225 45.8
Cc05_g12200 Coffea canephora HOM05D003356 ORTHO05D004362 2.4e-40 171.0 231 43.7
PRCOL_00004496 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 4.4e-34 150.2 338 31.1
TWI39G1274 Tripterygium wilfordii HOM05D003356 ORTHO05D004362 1.6e-28 131.7 262 37.8
AagrBONN_evm.TU.Sc2ySwM_362.248 Anthoceros agrestis HOM05D003356 ORTHO05D004362 2.1e-28 131.3 337 27.0
MCO09G800 Micromonas commoda HOM05D003356 ORTHO05D004362 6.2e-28 129.8 462 24.5
Dinv08306 Davidia involucrata HOM05D003356 ORTHO05D004362 2.4e-27 127.9 138 51.4
PRCOL_00001307 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 3.1e-27 127.5 337 29.7
Psat7g229040 Pisum sativum HOM05D003356 ORTHO05D004362 9.9e-26 122.5 101 56.4
MCO04G353 Micromonas commoda HOM05D003356 ORTHO05D004362 1.3e-25 122.1 343 27.4
A01p38720 Brassica napus HOM05D003356 ORTHO05D019431 1.7e-25 121.7 293 34.1
HPP92_020871 Vanilla planifolia HOM05D003356 ORTHO05D004362 5.4e-24 116.7 115 56.5
Cre01.g021500 Chlamydomonas reinhardtii HOM05D003356 ORTHO05D004362 1.6e-23 115.2 436 24.3
Lalb_Chr25g0286471 Lupinus albus HOM05D003356 ORTHO05D004362 3.9e-22 110.5 156 41.0
SEGI_32695 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 9.6e-21 105.9 113 51.3
VMungo1080G1275 Vigna mungo HOM05D003356 ORTHO05D004362 1.3e-20 105.5 158 41.1
AL230U10050 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 2.2e-17 94.7 114 49.1
AL3G27910 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 2.2e-17 94.7 114 49.1
Sabra11G0105400 Salix brachista HOM05D003356 ORTHO05D030555 3.5e-15 87.4 64 62.5
TPR.G17977 Trifolium pratense HOM05D003356 ORTHO05D030555 6.0e-15 86.7 207 33.3
BraA01t03913Z Brassica rapa HOM05D003356 ORTHO05D019431 4.3e-13 80.5 260 31.2
ECA236G4993 Erigeron canadensis HOM05D003356 ORTHO05D004362 4.8e-12 77.0 158 32.3
BcaC09g48503 Brassica carinata HOM05D003356 ORTHO05D019431 1.8e-06 58.5 287 25.4


User provided reference genes

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