Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 0.0e+00 1993.8 1030 100.0
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 4.3e-283 978.4 1126 50.6
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 2.1e-274 949.5 1104 51.5
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 1.0e-268 930.6 1112 48.9
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 2.5e-267 926.0 1104 49.5
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 7.3e-267 924.5 1094 50.6
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 2.8e-266 922.5 1107 48.5
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 4.9e-263 911.8 1099 49.2
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 1.9e-262 909.8 1125 48.0
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 5.4e-262 908.3 989 52.2
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 4.6e-261 905.2 1084 48.8
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 6.0e-261 904.8 1086 48.8
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 3.9e-260 902.1 1089 48.4
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 6.6e-260 901.4 1101 48.7
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 6.6e-260 901.4 1096 48.1
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 1.1e-259 900.6 1107 49.2
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 7.3e-259 897.9 1098 47.9
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 1.2e-258 897.1 1085 48.5
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 2.3e-257 892.9 1090 48.3
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 5.2e-257 891.7 1084 49.1
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 6.8e-257 891.3 1077 48.7
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.5e-256 890.2 1090 47.5
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 5.8e-256 888.3 1098 48.5
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 8.4e-255 884.4 1149 46.5
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 7.1e-254 881.3 1092 48.5
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 9.2e-254 880.9 1136 47.2
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 1.0e-252 877.5 1166 45.9
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 2.3e-252 876.3 1079 49.4
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 5.1e-252 875.2 1111 47.4
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 9.6e-251 870.9 1105 47.3
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 3.1e-249 865.9 959 50.9
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 4.4e-248 862.1 1116 47.5
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.1e-246 857.4 1081 48.1
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 1.9e-246 856.7 1092 47.9
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 9.3e-246 854.4 1089 47.6
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 7.8e-245 851.3 1118 46.7
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 1.0e-244 850.9 1098 46.2
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.7e-244 850.1 1077 47.4
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 6.6e-244 848.2 1086 47.5
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 5.6e-243 845.1 1093 46.8
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 2.4e-241 839.7 1083 46.5
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 1.5e-240 837.0 1133 44.1
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 2.0e-240 836.6 966 50.0
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 3.4e-240 835.9 1102 45.8
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 1.1e-238 830.9 1091 45.9
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 4.2e-238 828.9 1003 48.5
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 9.3e-238 827.8 1153 45.1
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 4.6e-237 825.5 1133 45.2
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 8.7e-236 821.2 1078 45.0
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 1.1e-235 820.8 972 49.3
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 2.1e-234 816.6 1105 45.3
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 3.1e-233 812.8 781 54.7
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 3.4e-232 809.3 731 56.8
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 4.5e-232 808.9 1000 47.1
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 1.9e-230 803.5 1109 44.9
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 7.1e-230 801.6 1023 46.1
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 3.5e-229 799.3 1097 45.6
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 1.1e-227 794.3 1084 46.6
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 2.1e-226 790.0 1108 44.9
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 3.7e-226 789.3 683 57.0
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 4.8e-226 788.9 1083 44.4
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 1.1e-225 787.7 1101 43.8
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 1.1e-225 787.7 1110 43.7
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 1.8e-225 786.9 1109 45.2
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 3.1e-225 786.2 957 47.2
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 4.0e-225 785.8 958 47.0
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 5.3e-225 785.4 1106 44.3
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 9.0e-225 784.6 960 47.1
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 1.3e-223 780.8 960 46.8
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 6.5e-223 778.5 958 47.4
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 7.1e-222 775.0 1092 43.4
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.5e-221 772.7 1052 44.6
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 4.6e-221 772.3 1135 44.3
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 3.9e-220 769.2 1073 44.5
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 8.7e-220 768.1 662 58.8
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 1.5e-216 757.3 661 57.5
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 1.5e-216 757.3 1090 43.6
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 5.9e-216 755.4 1099 43.4
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 3.0e-212 743.0 881 48.0
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 4.3e-211 739.2 1100 41.8
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.1e-209 734.6 998 45.7
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 1.4e-209 734.2 976 45.3
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 2.4e-209 733.4 1124 42.4
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 5.9e-208 728.8 1009 44.2
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 1.4e-206 724.2 1133 42.1
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 4.2e-206 722.6 584 64.0
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 9.4e-206 721.5 1097 41.7
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 1.2e-205 721.1 1133 41.7
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 1.6e-205 720.7 1099 41.5
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 7.4e-203 711.8 1091 41.8
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 8.5e-199 698.4 1126 40.9
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 1.9e-198 697.2 1083 41.2
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 4.2e-198 696.0 1103 41.5
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 9.4e-198 694.9 974 42.6
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 3.6e-197 693.0 999 41.7
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 2.2e-194 683.7 976 41.5
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 6.3e-194 682.2 580 61.4
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 1.1e-193 681.4 985 41.7
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 2.4e-193 680.2 976 43.8
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 2.4e-193 680.2 976 43.8
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 5.0e-191 672.5 1121 39.2
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 2.2e-183 647.1 969 40.5
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 3.0e-180 636.7 1067 39.3
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 4.0e-180 636.3 1085 39.7
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 2.5e-158 563.9 782 41.0
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 9.5e-158 562.0 1125 35.7
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 8.3e-154 548.9 1060 35.4
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 2.1e-149 534.3 441 61.7
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.0e-143 515.4 786 38.2
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 3.0e-135 487.3 837 37.4
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 9.6e-134 482.3 348 67.5
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 6.9e-132 476.1 1070 33.3
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 3.5e-112 410.6 863 31.7
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 4.3e-110 403.7 735 41.4
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 9.7e-102 375.9 947 31.3
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.4e-95 355.5 596 35.7
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 3.1e-84 317.8 274 58.8
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.2e-48 199.5 562 33.1
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.2e-48 199.5 513 30.6
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 2.3e-42 178.7 381 32.8
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 1.1e-36 159.8 675 26.7
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 3.2e-28 131.7 294 34.4
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 1.6e-24 119.4 118 54.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 6.8e-23 114.0 104 55.8
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 1.4e-20 106.3 85 63.5
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 9.2e-20 103.6 80 58.8
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.9e-17 95.9 93 53.8
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 4.9e-13 81.3 674 19.3
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 4.3e-09 68.2 77 54.5
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 9.6e-09 67.0 34 79.4
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.4e-07 63.2 61 55.7
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.4e-07 62.4 54 53.7
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 1.2e-06 60.1 114 42.1
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 4.5e-06 58.2 169 37.3


User provided reference genes

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