Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 3.7e-304 1047.3 509 100.0
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 7.1e-247 857.1 480 85.2
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.7e-245 852.4 480 84.2
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 3.0e-245 851.7 476 84.9
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 8.6e-245 850.1 475 84.4
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.2e-243 846.3 476 84.2
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 2.8e-243 845.1 475 85.7
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.8e-243 845.1 475 83.8
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 3.6e-243 844.7 456 85.5
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 6.2e-243 844.0 475 85.3
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 3.1e-242 841.6 457 85.6
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 5.2e-242 840.9 475 83.6
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 1.5e-241 839.3 475 85.1
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 3.4e-241 838.2 499 81.6
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.3e-240 836.3 474 84.0
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 1.3e-240 836.3 478 84.1
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 2.2e-240 835.5 479 82.9
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.9e-240 835.1 475 82.9
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 8.4e-240 833.6 484 82.0
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 8.4e-240 833.6 484 82.0
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 8.4e-240 833.6 479 82.7
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.4e-239 832.8 480 82.9
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 1.9e-239 832.4 478 83.3
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 2.4e-239 832.0 470 84.5
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 7.1e-239 830.5 474 83.5
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 9.2e-239 830.1 483 82.2
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 7.8e-238 827.0 475 83.2
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 7.8e-238 827.0 483 82.8
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 1.0e-237 826.6 476 82.8
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 1.3e-237 826.2 480 81.9
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 1.7e-237 825.9 480 81.9
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.7e-237 825.9 479 83.1
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.7e-237 825.9 483 82.6
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.3e-237 825.5 481 82.7
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 2.3e-237 825.5 476 82.4
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 3.0e-237 825.1 476 81.9
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 6.6e-237 823.9 487 80.3
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 1.9e-236 822.4 472 82.8
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 1.9e-236 822.4 480 82.5
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 2.5e-236 822.0 479 81.4
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 3.3e-236 821.6 481 80.9
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 3.3e-236 821.6 481 81.9
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 7.3e-236 820.5 476 82.1
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.2e-235 819.7 479 80.8
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 1.6e-235 819.3 476 83.0
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 3.6e-235 818.1 475 81.5
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 4.7e-235 817.8 479 81.4
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 6.2e-235 817.4 472 82.8
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 2.4e-234 815.5 472 82.2
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 3.1e-234 815.1 475 81.3
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 6.9e-234 813.9 479 80.0
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 9.0e-234 813.5 480 81.0
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 2.6e-233 812.0 471 81.5
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 4.4e-233 811.2 482 79.3
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 4.4e-233 811.2 479 81.4
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 4.4e-233 811.2 471 81.1
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 5.8e-233 810.8 479 82.0
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 7.6e-233 810.4 460 82.8
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 7.6e-233 810.4 471 81.5
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 9.9e-233 810.1 475 80.8
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 9.9e-233 810.1 484 79.1
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 9.9e-233 810.1 479 81.8
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 2.2e-232 808.9 475 82.3
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 2.9e-232 808.5 480 79.0
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 6.4e-232 807.4 479 80.0
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 6.4e-232 807.4 459 83.4
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 6.4e-232 807.4 481 80.0
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 1.1e-231 806.6 475 80.2
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.4e-231 806.2 494 78.9
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.4e-231 806.2 443 84.9
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.9e-231 805.8 480 78.5
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 1.9e-231 805.8 480 78.8
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 2.4e-231 805.4 479 80.2
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 2.4e-231 805.4 476 80.7
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 3.2e-231 805.1 477 80.5
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 4.2e-231 804.7 475 81.7
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 4.2e-231 804.7 448 84.4
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 5.4e-231 804.3 475 79.8
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 5.4e-231 804.3 480 78.5
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 7.1e-231 803.9 474 80.0
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 7.1e-231 803.9 476 79.6
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 9.3e-231 803.5 479 80.2
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 1.2e-230 803.1 475 80.2
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 2.1e-230 802.4 476 79.6
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 4.6e-230 801.2 474 79.1
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 4.6e-230 801.2 479 80.2
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 1.0e-229 800.0 475 81.7
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.3e-229 799.7 472 79.4
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 8.7e-229 797.0 488 77.3
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 8.7e-229 797.0 474 80.8
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 1.9e-228 795.8 484 77.9
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 3.3e-228 795.0 438 84.7
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.1e-227 792.3 475 80.4
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 3.6e-227 791.6 477 80.5
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 2.4e-226 788.9 478 78.0
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 2.4e-226 788.9 472 79.9
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 6.9e-226 787.3 475 79.8
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.0e-225 785.8 492 78.0
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 3.9e-221 771.5 504 75.0
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.0e-217 759.2 470 77.2
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.3e-213 745.7 500 73.4
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.5e-212 743.0 457 79.4
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 4.8e-211 738.0 465 74.2
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 4.0e-210 734.9 443 78.6
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 2.0e-209 732.6 480 74.0
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 6.5e-208 727.6 474 72.6
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 3.9e-205 718.4 447 75.6
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 1.1e-204 716.8 503 71.6
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.3e-203 713.4 490 71.8
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.4e-202 709.9 469 71.4
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.3e-200 703.4 510 69.2
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 6.1e-190 667.9 380 82.4
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 3.8e-184 648.7 465 68.6
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 8.5e-184 647.5 479 68.7
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 8.0e-174 614.4 361 78.9
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 4.8e-171 605.1 361 78.4
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 3.8e-168 595.5 492 62.8
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 8.0e-166 587.8 477 63.7
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.0e-152 544.3 304 82.6
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.6e-145 520.4 304 80.3
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 2.7e-145 519.6 408 65.2
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 7.8e-145 518.1 410 62.2
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 3.2e-138 496.1 281 83.6
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 4.6e-137 492.3 275 84.4
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 1.9e-135 486.9 435 54.7
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.1e-127 461.1 308 72.4
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 7.8e-121 438.3 303 70.6
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 9.0e-109 398.3 245 75.1
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 4.2e-106 389.4 228 80.3
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 4.2e-106 389.4 228 80.3
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 2.3e-104 383.6 211 87.2
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 4.3e-95 352.8 418 47.1
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 6.7e-88 328.9 473 43.6
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 1.1e-87 328.2 200 79.0
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 3.4e-76 290.0 429 42.4
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 1.1e-74 285.0 153 82.4
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 2.3e-64 250.8 182 65.9
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 3.0e-64 250.4 170 71.8
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 1.5e-63 248.1 170 71.2
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.5e-63 248.1 182 65.4
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.5e-47 194.9 99 85.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.5e-47 194.9 99 85.9
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.5e-42 178.3 111 75.7
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.0e-35 155.6 105 68.6
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 2.9e-35 154.1 97 73.2
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 8.6e-35 152.5 95 78.9
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 2.8e-33 147.5 77 85.7
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 1.1e-29 135.6 77 81.8
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 1.6e-28 131.7 86 68.6
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 5.4e-21 106.7 133 42.9
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.6e-20 105.1 56 83.9
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 2.3e-19 101.3 65 69.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 3.6e-17 94.0 72 68.1
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 3.6e-17 94.0 72 68.1
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 9.9e-15 85.9 45 84.4
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 6.4e-14 83.2 48 83.3
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 3.5e-12 77.4 73 56.2
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 4.6e-12 77.0 72 55.6
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 1.1e-10 72.4 34 91.2
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 3.4e-07 60.8 34 82.4
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 1.3e-06 58.9 35 77.1


User provided reference genes

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