Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.0e-134 483.4 239 100.0
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.0e-134 483.4 239 100.0
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.0e-98 362.8 237 75.1
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 7.5e-98 360.9 237 76.8
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 1.3e-97 360.1 236 75.8
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 2.2e-97 359.4 237 75.5
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 2.2e-97 359.4 237 75.5
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 6.3e-97 357.8 239 74.5
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.8e-96 356.3 237 73.0
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.8e-96 356.3 236 75.0
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.8e-96 356.3 237 76.4
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.8e-96 356.3 238 73.5
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.8e-96 356.3 238 73.5
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 4.1e-96 355.1 239 72.8
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 7.0e-96 354.4 238 73.5
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.6e-95 353.2 236 73.7
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.6e-95 353.2 236 75.0
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.0e-95 352.8 236 74.6
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 3.5e-95 352.1 236 75.0
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 3.5e-95 352.1 235 72.3
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 4.5e-95 351.7 235 72.8
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.5e-95 351.7 236 74.6
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 5.9e-95 351.3 241 73.0
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 5.9e-95 351.3 238 73.5
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 7.7e-95 350.9 235 71.9
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.3e-94 350.1 237 74.3
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 1.3e-94 350.1 237 73.0
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.3e-94 350.1 235 70.6
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 1.7e-94 349.7 235 72.3
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 1.7e-94 349.7 236 71.6
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 2.2e-94 349.4 235 73.2
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 2.9e-94 349.0 237 74.3
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 2.9e-94 349.0 235 72.8
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 3.8e-94 348.6 237 72.6
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.8e-94 348.6 236 72.5
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 5.0e-94 348.2 236 73.3
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 8.5e-94 347.4 236 72.5
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 8.5e-94 347.4 237 73.8
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.1e-93 347.1 236 73.7
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.1e-93 347.1 238 75.6
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.9e-93 346.3 236 72.0
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.9e-93 346.3 235 71.1
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 2.5e-93 345.9 233 74.2
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 2.5e-93 345.9 236 72.0
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.5e-93 345.9 236 72.0
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 2.5e-93 345.9 238 71.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 2.5e-93 345.9 236 72.9
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.2e-93 345.1 236 71.6
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.2e-93 345.1 237 73.8
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 4.2e-93 345.1 236 72.9
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 5.5e-93 344.7 236 71.6
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.5e-93 344.7 236 71.6
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.5e-93 344.7 236 71.6
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 5.5e-93 344.7 237 73.0
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 7.2e-93 344.4 238 71.4
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 9.4e-93 344.0 236 73.7
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 9.4e-93 344.0 236 71.6
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.6e-92 343.2 237 73.4
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.6e-92 343.2 237 71.3
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.6e-92 343.2 235 73.2
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.6e-92 343.2 236 73.3
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 2.7e-92 342.4 237 73.0
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 3.6e-92 342.0 267 66.7
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 4.7e-92 341.7 236 72.5
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 8.0e-92 340.9 241 72.6
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.0e-91 340.5 237 70.9
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.0e-91 340.5 237 71.3
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.8e-91 339.7 236 70.8
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.8e-91 339.7 239 70.7
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 3.0e-91 339.0 237 72.6
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 3.0e-91 339.0 238 72.3
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 5.2e-91 338.2 236 72.5
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 6.8e-91 337.8 262 66.4
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 8.8e-91 337.4 238 71.8
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.2e-90 337.0 236 71.6
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.5e-90 336.7 236 70.3
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 4.4e-90 335.1 248 70.6
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 4.4e-90 335.1 236 72.9
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 9.8e-90 334.0 237 70.9
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 9.8e-90 334.0 241 71.0
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.8e-89 332.4 237 71.3
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 3.7e-89 332.0 234 72.2
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 4.8e-89 331.6 243 69.1
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 6.3e-89 331.3 237 71.7
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.1e-88 330.5 236 69.5
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.4e-88 330.1 236 70.3
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 1.4e-88 330.1 237 70.0
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.8e-88 329.7 239 70.3
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 2.4e-88 329.3 234 71.8
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 5.4e-88 328.2 236 68.6
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 5.4e-88 328.2 236 69.1
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 9.1e-88 327.4 238 69.7
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 9.1e-88 327.4 237 69.2
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.2e-87 327.0 237 70.5
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.2e-87 327.0 224 72.8
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.2e-87 327.0 270 64.1
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.6e-87 326.6 239 69.5
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 2.7e-87 325.9 238 68.9
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 2.7e-87 325.9 238 68.9
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 4.5e-87 325.1 237 68.8
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 4.5e-87 325.1 243 70.4
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 5.9e-87 324.7 238 70.6
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 5.9e-87 324.7 239 69.0
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 7.7e-87 324.3 238 68.5
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 7.7e-87 324.3 227 71.8
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.0e-86 323.9 241 67.2
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 1.3e-86 323.6 240 68.3
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.3e-86 323.6 238 68.5
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 1.7e-86 323.2 238 68.1
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.7e-86 323.2 239 67.8
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 2.3e-86 322.8 220 72.7
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.9e-86 322.4 240 67.9
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 2.9e-86 322.4 234 69.7
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 6.5e-86 321.2 239 67.4
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 8.6e-86 320.9 237 68.4
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.1e-85 320.5 238 68.1
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 5.5e-85 318.2 236 67.8
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.2e-81 306.2 310 53.5
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 2.2e-81 306.2 239 65.7
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 9.2e-80 300.8 242 64.5
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 3.3e-77 292.4 236 62.7
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 5.6e-77 291.6 236 62.3
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 8.0e-76 287.7 235 62.1
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 7.0e-72 274.6 197 67.5
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 8.0e-68 261.2 215 65.6
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.0e-67 258.8 221 57.9
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 4.9e-57 225.3 132 83.3
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.9e-56 223.4 259 51.0
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.9e-56 223.4 229 55.9
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.4e-56 223.0 240 55.0
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.4e-56 223.0 163 68.1
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 7.8e-55 218.0 132 77.3
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 3.9e-54 215.7 160 64.4
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 5.8e-50 201.8 120 81.7
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.6e-50 201.4 119 83.2
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.9e-45 186.8 280 41.4
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 4.3e-45 185.7 146 62.3
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 7.3e-37 158.3 145 57.2
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.5e-34 150.6 117 57.3
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 6.4e-33 145.2 195 45.1
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 9.3e-32 141.4 187 46.5
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 7.9e-31 138.3 158 50.6
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 9.9e-26 121.3 129 49.6
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 5.7e-13 79.0 44 93.2
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 9.7e-13 78.2 78 52.6
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 4.8e-12 75.9 74 54.1
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.9e-11 72.0 36 100.0
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.5e-08 63.5 48 75.0
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 2.5e-08 63.5 39 74.4
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 4.6e-07 59.3 29 100.0


User provided reference genes

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