Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.9e-290 1001.1 496 100.0
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 8.2e-232 807.0 493 80.7
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 3.1e-231 805.1 494 79.4
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 3.1e-231 805.1 490 80.4
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.1e-231 805.1 495 80.2
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 5.3e-231 804.3 493 80.1
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 6.9e-231 803.9 486 81.7
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 9.0e-231 803.5 494 80.4
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.5e-230 802.7 496 79.4
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.7e-229 799.3 490 80.0
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 2.2e-229 798.9 492 78.9
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 2.9e-229 798.5 493 80.3
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 3.8e-229 798.1 490 79.8
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.1e-228 796.6 487 80.1
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.4e-228 796.2 494 79.8
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.4e-228 796.2 486 80.2
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 2.5e-228 795.4 494 80.2
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 4.2e-228 794.7 492 77.6
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.5e-228 794.3 487 81.7
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 5.5e-228 794.3 485 79.8
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 7.2e-228 793.9 493 78.7
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.2e-227 793.1 493 78.9
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.6e-227 792.7 493 79.5
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 2.1e-227 792.3 494 78.7
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.1e-227 792.3 485 80.4
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.6e-227 791.2 485 80.2
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 4.6e-227 791.2 493 77.9
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 6.1e-227 790.8 487 79.3
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 7.9e-227 790.4 485 80.4
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 7.9e-227 790.4 494 79.6
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 1.0e-226 790.0 492 78.0
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.0e-226 790.0 484 78.9
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.0e-226 790.0 484 80.0
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.0e-226 790.0 495 79.6
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.8e-226 789.3 493 79.7
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.8e-226 789.3 486 80.5
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.8e-226 789.3 490 79.2
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.8e-226 789.3 485 80.2
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 5.1e-226 787.7 484 79.1
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 6.7e-226 787.3 485 79.2
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.1e-225 786.6 484 78.9
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.5e-225 786.2 484 78.5
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.5e-225 786.2 494 78.5
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 5.7e-225 784.3 505 77.8
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 7.4e-225 783.9 496 77.6
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 9.7e-225 783.5 485 78.8
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 1.3e-224 783.1 494 78.7
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.6e-224 782.7 487 78.2
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 2.2e-224 782.3 486 79.4
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.2e-224 782.3 485 79.6
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 6.3e-224 780.8 485 79.4
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 6.3e-224 780.8 484 78.7
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.1e-223 780.0 487 77.8
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.4e-223 779.6 485 78.6
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.8e-223 779.2 493 77.5
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 2.4e-223 778.9 487 79.1
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 3.1e-223 778.5 493 78.5
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 4.1e-223 778.1 494 77.3
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 5.3e-223 777.7 494 77.9
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 5.3e-223 777.7 523 74.6
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.0e-223 776.9 493 76.3
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.0e-223 776.9 493 76.3
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.2e-222 776.5 500 76.6
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 2.0e-222 775.8 486 78.6
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 2.6e-222 775.4 493 76.3
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.5e-222 774.6 513 76.4
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 7.7e-222 773.9 485 78.6
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 7.7e-222 773.9 493 77.7
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.7e-221 772.7 493 76.3
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.0e-221 771.2 493 75.7
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 5.0e-221 771.2 500 77.8
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 2.5e-220 768.8 491 77.2
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.5e-220 768.8 519 74.8
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.5e-220 768.8 498 76.7
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 4.2e-220 768.1 477 79.0
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 7.2e-220 767.3 494 77.5
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.2e-219 766.5 494 76.1
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.6e-219 766.1 492 76.2
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.6e-219 766.1 490 77.1
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.6e-219 766.1 493 75.7
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 2.7e-219 765.4 489 76.7
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 4.6e-219 764.6 494 76.1
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 7.9e-219 763.8 483 78.1
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.0e-218 763.5 490 76.3
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.0e-218 763.5 495 75.6
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.4e-218 763.1 492 75.8
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.4e-218 763.1 481 78.0
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 2.3e-218 762.3 489 77.9
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 2.3e-218 762.3 493 75.7
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 3.0e-218 761.9 491 75.8
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.9e-218 761.5 490 76.1
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 5.1e-218 761.1 493 75.7
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 5.1e-218 761.1 515 75.1
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 6.7e-218 760.8 490 76.1
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.1e-217 760.0 493 75.5
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.3e-217 758.4 490 76.1
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 4.3e-217 758.1 498 74.5
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 4.3e-217 758.1 497 75.5
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 5.7e-217 757.7 489 76.1
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.3e-216 756.5 489 75.7
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 4.8e-216 754.6 489 76.1
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 4.8e-216 754.6 490 75.3
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.8e-215 752.7 492 75.6
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 1.8e-207 726.1 436 81.2
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.8e-207 726.1 444 80.0
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 2.9e-205 718.8 491 72.9
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 9.4e-204 713.8 448 76.8
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 4.0e-202 708.4 441 78.0
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.5e-201 706.4 441 80.3
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 2.6e-201 705.7 442 78.1
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 6.3e-200 701.0 503 69.0
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 7.7e-198 694.1 442 76.9
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 5.5e-196 688.0 484 70.5
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 5.4e-191 671.4 490 67.3
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 1.7e-189 666.4 381 85.0
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.7e-184 649.8 480 70.6
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.4e-183 646.7 489 69.9
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 8.3e-176 620.9 406 76.8
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 1.1e-172 610.5 494 65.0
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 3.6e-171 605.5 383 78.3
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.4e-167 593.6 507 61.3
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 3.9e-165 585.5 492 62.4
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.2e-163 578.2 383 74.4
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 4.3e-156 555.4 391 71.9
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.7e-152 543.5 459 64.3
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.5e-148 530.4 344 74.7
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.0e-145 520.0 382 69.6
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 2.6e-145 519.6 528 52.3
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.2e-134 484.2 239 100.0
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.9e-130 468.4 265 85.7
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 7.6e-121 438.3 469 51.2
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.5e-113 414.1 245 82.0
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 7.2e-111 405.2 237 82.3
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.7e-104 384.0 430 49.5
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 3.8e-104 382.9 242 76.4
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.6e-102 376.3 228 80.7
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.8e-101 374.0 301 64.5
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.4e-100 368.6 473 47.8
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 2.1e-94 350.5 253 68.8
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 3.0e-93 346.7 303 63.7
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.7e-81 307.0 310 53.5
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 5.2e-77 292.7 236 62.7
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 2.0e-73 280.8 254 60.2
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.3e-56 224.9 260 51.2
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 8.0e-54 215.7 160 64.4
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 4.9e-51 206.5 151 75.5
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 8.9e-45 185.7 146 62.3
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 4.9e-43 179.9 300 41.0
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 1.9e-42 177.9 99 80.8
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 2.4e-42 177.6 103 80.6
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 2.4e-42 177.6 96 88.5
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.5e-36 158.3 145 57.2
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 3.2e-34 150.6 117 57.3
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.6e-30 138.3 158 50.6
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.4e-29 135.2 75 84.0
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 4.9e-27 126.7 79 74.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 1.4e-26 125.2 85 70.6
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 2.1e-25 121.3 129 49.6
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.8e-19 100.5 93 58.1
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 7.4e-15 86.3 61 75.4
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 9.9e-12 75.9 74 54.1
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 1.4e-10 72.0 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 3.5e-09 67.4 51 66.7
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 5.1e-08 63.5 39 74.4
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.5e-07 62.0 30 90.0


User provided reference genes

Program Settings