Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012877 Vanilla planifolia HOM05D003919 ORTHO05D004906 0.0e+00 3476.4 1738 100.0
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 1829.7 1974 51.3
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1757.3 1972 49.4
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 1755.7 1954 48.7
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 1755.0 1969 49.4
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 1749.2 1966 48.8
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 1746.5 1960 48.9
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 1745.7 1974 49.0
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 1745.3 1962 48.5
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 1744.6 1968 49.1
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 1740.3 1968 48.6
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 1733.8 1968 49.0
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 1732.6 1969 48.4
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 1732.6 1970 48.6
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 1729.5 1970 48.4
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 1728.8 1970 48.3
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 1727.2 1993 48.1
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 1726.8 1966 47.5
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 1725.7 1984 48.4
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 1716.0 1967 48.7
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 1713.4 1970 48.9
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 1711.4 1976 48.1
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1708.7 1972 49.0
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 1695.2 1992 48.3
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 1688.3 1993 48.0
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 1687.5 1969 47.6
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 1682.5 1986 47.9
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 1682.2 1979 47.5
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 1682.2 1966 47.0
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 1681.4 1979 47.4
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 1672.9 1963 47.1
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 1671.4 1968 47.1
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 1666.4 1971 46.9
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 1663.7 1962 47.5
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 1660.6 1963 46.8
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 1656.7 1965 46.9
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 1649.8 1962 46.6
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 1648.3 1974 46.6
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 1641.7 1966 47.0
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 1640.9 1970 46.4
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 1634.8 1966 46.3
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 1632.8 1962 46.7
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 1632.5 1968 46.8
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 1627.1 1962 45.7
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 1609.3 1970 46.3
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 1607.8 1971 46.4
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 1607.0 1968 45.7
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 1602.4 1991 45.7
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 1591.6 1801 48.5
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 1590.5 1964 45.3
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 1587.0 1963 44.4
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 1583.9 1963 44.9
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 1582.4 1970 44.9
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 1579.3 1954 45.3
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 1577.8 2085 43.6
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 1576.2 1953 45.0
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 1573.1 1953 45.0
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 1573.1 1977 44.2
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 1571.2 1980 44.7
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1565.4 1946 45.8
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 1563.5 1969 46.1
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 1561.6 1961 44.8
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 1560.8 1965 44.7
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 1550.0 1963 44.2
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 1541.6 2275 40.5
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 1538.5 1958 43.8
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 1530.8 1953 43.8
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 1526.9 1844 46.0
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 1526.5 1954 43.7
Ca_30179_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 1462.6 1738 47.1
Gohir.A12G133900 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 1409.8 1639 47.4
Dinv01184 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1380.2 1592 48.6
Ah.01g012290 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 1338.2 1659 44.8
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1318.1 1558 46.7
CDE08G1346 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 1278.5 1742 41.8
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 1224.2 1906 40.0
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 1189.5 1948 38.0
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 0.0e+00 1175.6 2027 36.7
Os04g0675200 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 1169.8 1317 48.9
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 0.0e+00 1158.7 2038 36.8
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 0.0e+00 1153.3 2012 36.3
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 1083.9 1373 44.6
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 3.1e-310 1069.3 1372 44.3
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 1.3e-279 967.6 1181 44.7
Peaxi162Scf00363g00321 Petunia axillaris HOM05D003919 ORTHO05D004906 4.4e-272 942.6 1158 44.4
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 2.0e-264 917.1 1962 32.6
Solyc02g014180.2 Solanum lycopersicum HOM05D003919 ORTHO05D004906 2.2e-255 887.1 961 49.8
SEGI_31724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 7.0e-254 882.1 1180 42.1
Oeu055858.1 Olea europaea HOM05D003919 ORTHO05D004906 2.7e-253 880.2 946 48.7
Nitab4.5_0023098g0010 Nicotiana tabacum HOM05D003919 ORTHO05D004906 2.9e-231 807.0 1062 42.6
Cpa.g.sc0.152 Carica papaya HOM05D003919 ORTHO05D004906 3.3e-227 793.5 1023 43.0
Lj6P719T30 Lonicera japonica HOM05D003919 ORTHO05D004906 2.1e-197 694.5 750 50.0
Lj6A719G42 Lonicera japonica HOM05D003919 ORTHO05D004906 1.7e-162 578.6 592 53.0
vmacro10894 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 2.4e-161 574.7 608 51.5
Cpa.g.sc0.150 Carica papaya HOM05D003919 ORTHO05D004906 4.5e-160 570.5 607 52.7
ECA233G4021 Erigeron canadensis HOM05D003919 ORTHO05D004906 1.9e-158 565.1 968 36.1
Peaxi162Scf00363g00327 Petunia axillaris HOM05D003919 ORTHO05D004906 4.1e-153 547.4 611 48.4
Nitab4.5_0003853g0030 Nicotiana tabacum HOM05D003919 ORTHO05D004906 3.5e-152 544.3 598 49.2
Solyc02g014170.3 Solanum lycopersicum HOM05D003919 ORTHO05D004906 9.4e-150 536.2 608 47.9
ECA233G3594 Erigeron canadensis HOM05D003919 ORTHO05D004906 3.6e-149 534.3 940 35.4
Nitab4.5_0000405g0050 Nicotiana tabacum HOM05D003919 ORTHO05D004906 1.0e-148 532.7 598 48.8
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 9.2e-129 466.5 486 51.9
ECA233G5658 Erigeron canadensis HOM05D003919 ORTHO05D004906 2.5e-126 458.4 827 34.7
HanXRQChr08g0218781 Helianthus annuus HOM05D003919 ORTHO05D004906 5.8e-115 420.6 740 35.4
HanXRQChr08g0218771 Helianthus annuus HOM05D003919 ORTHO05D004906 8.3e-114 416.8 766 35.1
SEGI_28603 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 7.8e-104 383.6 558 41.8
ECA233G0722 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-102 378.6 604 35.4
SGA_v2.0_scaffold2647G54168 Striga asiatica HOM05D003919 ORTHO05D004906 4.0e-92 344.7 455 41.8
TAR374G0021 Trochodendron aralioides HOM05D003919 ORTHO05D004906 5.3e-84 317.8 329 53.8
Os04g0675300 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 2.7e-80 305.4 295 55.9
Atru.chr11.1141 Acer truncatum HOM05D002456 ORTHO05D002994 4.2e-65 255.0 489 35.8
GSVIVG01028587001 Vitis vinifera HOM05D003919 ORTHO05D004906 4.2e-65 255.0 313 47.3
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 2.7e-56 225.7 1767 20.9
ECA233G0256 Erigeron canadensis HOM05D000006 ORTHO05D000091 2.6e-46 192.6 247 45.7
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 4.5e-43 181.8 132 64.4
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 1.3e-42 180.3 131 64.9
CDE08G0032 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 1.4e-39 170.2 157 55.4
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 5.2e-39 168.3 132 61.4
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 8.8e-39 167.5 130 60.8
ECA233G4978 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.6e-38 166.0 510 28.8
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 2.6e-38 166.0 132 60.6
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 1.7e-37 163.3 132 57.6
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 1.6e-35 156.8 825 23.2
Psat1g148120 Pisum sativum HOM05D003919 ORTHO05D002405 2.9e-34 152.5 131 58.0
AUR62015233 Chenopodium quinoa HOM05D003919 ORTHO05D004906 2.7e-32 146.0 118 60.2
Cpa.g.sc0.154 Carica papaya HOM05D003919 ORTHO05D043505 2.8e-29 136.0 97 67.0
Nitab4.5_0003853g0040 Nicotiana tabacum HOM05D003919 ORTHO05D043505 5.5e-25 121.7 90 64.4
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 6.8e-23 114.8 132 55.3
Psat0s760g0040 Pisum sativum HOM05D003919 ORTHO05D004906 1.6e-19 103.6 88 55.7
ECA233G5805 Erigeron canadensis HOM05D003919 ORTHO05D004906 3.3e-17 95.9 124 38.7
MELO3C004964.2 Cucumis melo HOM05D003919 ORTHO05D004906 7.2e-17 94.7 67 64.2
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 8.3e-13 81.3 46 82.6
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 7.0e-12 78.2 621 23.5
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 5.0e-10 72.0 623 23.6
CAN.G157.23 Capsicum annuum HOM05D003919 ORTHO05D004906 1.9e-09 70.1 44 75.0
arahy.Tifrunner.gnm1.ann1.5S361I Arachis hypogaea HOM05D003919 ORTHO05D004906 5.8e-06 58.5 132 31.8
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 7.5e-06 58.2 132 31.1


User provided reference genes

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