Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012117 Vanilla planifolia HOM05D000592 ORTHO05D001485 1.8e-246 855.5 451 100.0
HPP92_012127 Vanilla planifolia HOM05D000592 ORTHO05D001485 1.9e-73 280.8 270 61.1
TAR365G0678 Trochodendron aralioides HOM05D000592 ORTHO05D001485 1.5e-30 138.3 451 27.3
TAR362G0063 Trochodendron aralioides HOM05D000592 ORTHO05D001485 5.3e-28 129.8 447 28.2
TAR633G1270 Trochodendron aralioides HOM05D000592 ORTHO05D001485 7.4e-22 109.4 448 26.3
CSS0042524 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D001485 3.7e-21 107.1 431 26.9
HPP92_024844 Vanilla planifolia HOM05D000592 ORTHO05D001485 8.2e-21 105.9 439 26.2
Aqoxy5G00422 Aquilegia oxysepala HOM05D000592 ORTHO05D001485 3.1e-20 104.0 476 26.5
Os03g0637900 Oryza sativa ssp. japonica HOM05D000592 ORTHO05D001485 4.0e-20 103.6 328 28.4
Actinidia40125 Actinidia chinensis HOM05D000592 ORTHO05D001485 2.6e-19 100.9 458 25.5
Cfa006181 Carpinus fangiana HOM05D000592 ORTHO05D001485 2.6e-19 100.9 447 24.6
Os03g0161100 Oryza sativa ssp. japonica HOM05D000592 ORTHO05D001485 1.0e-18 99.0 440 25.5
Zm00001eb050880 Zea mays HOM05D000592 ORTHO05D001485 1.3e-18 98.6 403 27.3
Dinv32897 Davidia involucrata HOM05D000592 ORTHO05D001485 2.2e-18 97.8 443 23.3
Haze_04665 Corylus avellana HOM05D000592 ORTHO05D001485 8.4e-18 95.9 449 25.2
FvH4_2g23102 Fragaria vesca HOM05D000592 ORTHO05D001485 8.4e-18 95.9 425 26.6
Rhsim04G0199200 Rhododendron simsii HOM05D000592 ORTHO05D001485 8.4e-18 95.9 447 28.0
FAN24G2442 Fragaria x ananassa HOM05D000592 ORTHO05D001485 1.4e-17 95.1 423 26.2
Lj6C610T3 Lonicera japonica HOM05D000592 ORTHO05D001485 2.5e-17 94.4 430 25.6
TWI12G0883 Tripterygium wilfordii HOM05D000592 ORTHO05D001485 3.2e-17 94.0 468 26.5
CiPaw.01G197200 Carya illinoinensis HOM05D000592 ORTHO05D001485 4.2e-17 93.6 440 26.4
FAN15G2415 Fragaria x ananassa HOM05D000592 ORTHO05D001485 4.2e-17 93.6 426 25.6
vmacro08360 Vaccinium macrocarpon HOM05D000592 ORTHO05D001485 4.2e-17 93.6 443 26.0
Zm00001eb031290 Zea mays HOM05D000592 ORTHO05D001485 9.3e-17 92.4 417 26.6
CiPaw.08G108300 Carya illinoinensis HOM05D000592 ORTHO05D001485 1.2e-16 92.0 444 24.1
CiPaw.02G122400 Carya illinoinensis HOM05D000592 ORTHO05D001485 2.1e-16 91.3 478 25.1
MD03G1260100 Malus domestica HOM05D000592 ORTHO05D001485 2.7e-16 90.9 420 26.0
CSS0037517 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D001485 3.5e-16 90.5 444 26.1
TWI09G1283 Tripterygium wilfordii HOM05D000592 ORTHO05D001485 3.5e-16 90.5 451 25.1
FAN27G2684 Fragaria x ananassa HOM05D000592 ORTHO05D001485 1.0e-15 89.0 441 24.5
Dinv14033 Davidia involucrata HOM05D000592 ORTHO05D001485 2.3e-15 87.8 451 24.8
QL06p001382 Quercus lobata HOM05D000592 ORTHO05D001485 3.0e-15 87.4 446 24.2
Zm00001eb135720 Zea mays HOM05D000592 ORTHO05D001485 5.1e-15 86.7 456 23.7
FAN22G2244 Fragaria x ananassa HOM05D000592 ORTHO05D001485 6.7e-15 86.3 455 22.2
Actinidia23535 Actinidia chinensis HOM05D000592 ORTHO05D001485 8.7e-15 85.9 465 24.7
Ciclev10018459m.g Citrus clementina HOM05D000592 ORTHO05D001485 8.7e-15 85.9 460 25.7
Gorai.007G139300 Gossypium raimondii HOM05D000592 ORTHO05D001485 8.7e-15 85.9 444 24.8
Gohir.D11G130300 Gossypium hirsutum HOM05D000592 ORTHO05D001485 1.1e-14 85.5 444 25.0
Hma1.2p1_2084F.1_g313640 Hydrangea macrophylla HOM05D000592 ORTHO05D001485 1.5e-14 85.1 421 25.2
Os12g0605100 Oryza sativa ssp. japonica HOM05D000592 ORTHO05D001485 1.9e-14 84.7 288 29.5
Prupe.1G019400 Prunus persica HOM05D000592 ORTHO05D001485 1.9e-14 84.7 469 23.0
THA.LOC104803055 Tarenaya hassleriana HOM05D000592 ORTHO05D001485 1.9e-14 84.7 448 25.7
BraA05t21480Z Brassica rapa HOM05D000592 ORTHO05D001485 2.5e-14 84.3 436 24.5
Manes.01G204900 Manihot esculenta HOM05D000592 ORTHO05D001485 2.5e-14 84.3 454 24.4
RcHm_v2.0_Chr4g0387381 Rosa chinensis HOM05D000592 ORTHO05D001485 2.5e-14 84.3 472 23.5
Peaxi162Scf00520g00613 Petunia axillaris HOM05D000592 ORTHO05D001485 3.3e-14 84.0 463 22.9
Nitab4.5_0003249g0050 Nicotiana tabacum HOM05D000592 ORTHO05D001485 4.3e-14 83.6 463 23.8
PGSC0003DMG400007687 Solanum tuberosum HOM05D000592 ORTHO05D001485 5.7e-14 83.2 450 22.4
Cc03_g04140 Coffea canephora HOM05D000592 ORTHO05D001485 7.4e-14 82.8 466 24.5
Lj3A729T52 Lonicera japonica HOM05D000592 ORTHO05D001485 9.7e-14 82.4 429 24.9
Nn1g02404 Nelumbo nucifera HOM05D000592 ORTHO05D001485 9.7e-14 82.4 349 25.8
BolC5t32773H Brassica oleracea HOM05D000592 ORTHO05D001485 1.3e-13 82.0 439 23.2
MD11G1280400 Malus domestica HOM05D000592 ORTHO05D001485 1.3e-13 82.0 387 24.3
SGA_v2.0_scaffold308G48125 Striga asiatica HOM05D000592 ORTHO05D001485 1.3e-13 82.0 455 22.9
TWI53G0917 Tripterygium wilfordii HOM05D000592 ORTHO05D001485 1.3e-13 82.0 469 26.0
Prupe.8G236300 Prunus persica HOM05D000592 ORTHO05D001485 1.6e-13 81.6 249 26.5
Manes.15G031600 Manihot esculenta HOM05D000592 ORTHO05D001485 2.2e-13 81.3 450 23.8
FvH4_4g00822 Fragaria vesca HOM05D000592 ORTHO05D001485 3.7e-13 80.5 454 22.0
Gohir.A11G125100 Gossypium hirsutum HOM05D000592 ORTHO05D001485 4.8e-13 80.1 444 24.5
TWI18G0970 Tripterygium wilfordii HOM05D000592 ORTHO05D001485 4.8e-13 80.1 307 27.7
A05p25950 Brassica napus HOM05D000592 ORTHO05D001485 6.3e-13 79.7 436 24.1
Dinv22512 Davidia involucrata HOM05D000592 ORTHO05D001485 8.2e-13 79.3 432 24.3
Dinv34787 Davidia involucrata HOM05D000592 ORTHO05D001485 8.2e-13 79.3 432 24.3
C05p40320 Brassica napus HOM05D000592 ORTHO05D001485 1.1e-12 79.0 439 23.2
BolC1t04110H Brassica oleracea HOM05D000592 ORTHO05D001485 1.1e-12 79.0 435 22.5
Glyma.11G006800 Glycine max HOM05D000592 ORTHO05D001485 1.1e-12 79.0 448 23.7
Potri.010G083300 Populus trichocarpa HOM05D000592 ORTHO05D001485 1.4e-12 78.6 458 24.7
Sopen10g014450 Solanum pennellii HOM05D000592 ORTHO05D001485 1.4e-12 78.6 420 25.0
Lalb_Chr06g0160711 Lupinus albus HOM05D000592 ORTHO05D001485 1.8e-12 78.2 446 23.5
Nn6g34135 Nelumbo nucifera HOM05D000592 ORTHO05D001485 2.4e-12 77.8 467 24.6
AUR62033645 Chenopodium quinoa HOM05D000592 ORTHO05D001485 4.1e-12 77.0 426 23.7
Lj1A50G82 Lonicera japonica HOM05D000592 ORTHO05D001485 4.1e-12 77.0 447 24.4
Hund12098 Selenicereus undatus HOM05D000592 ORTHO05D001485 4.1e-12 77.0 449 22.9
HPP92_023545 Vanilla planifolia HOM05D000592 ORTHO05D001485 5.3e-12 76.6 336 24.1
C01p41560 Brassica napus HOM05D000592 ORTHO05D001485 6.9e-12 76.3 434 22.8
MD16G1197900 Malus domestica HOM05D000592 ORTHO05D001485 6.9e-12 76.3 372 24.5
Sc17g0001230 Simmondsia chinensis HOM05D000592 ORTHO05D001485 6.9e-12 76.3 449 22.3
Solyc09g082510.3 Solanum lycopersicum HOM05D000592 ORTHO05D001485 9.0e-12 75.9 450 21.6
Sopen09g031370 Solanum pennellii HOM05D000592 ORTHO05D001485 1.2e-11 75.5 450 21.6
Sed0003437 Sechium edule HOM05D000592 ORTHO05D001485 1.5e-11 75.1 441 23.4
Solyc10g045290.2 Solanum lycopersicum HOM05D000592 ORTHO05D001485 1.5e-11 75.1 420 24.5
Glyma.01G236400 Glycine max HOM05D000592 ORTHO05D001485 2.0e-11 74.7 436 23.4
Sabra10G0059700 Salix brachista HOM05D000592 ORTHO05D001485 2.6e-11 74.3 465 25.6
VMungo0720G2930 Vigna mungo HOM05D000592 ORTHO05D001485 2.6e-11 74.3 456 23.0
Duzib211G0338 Durio zibethinus HOM05D000592 ORTHO05D001485 3.4e-11 73.9 445 24.0
Nitab4.5_0000050g0270 Nicotiana tabacum HOM05D000592 ORTHO05D001485 4.5e-11 73.6 442 21.9
Nitab4.5_0000085g0270 Nicotiana tabacum HOM05D000592 ORTHO05D001485 4.5e-11 73.6 465 22.8
COL.COLO4_09053 Corchorus olitorius HOM05D000592 ORTHO05D001485 5.9e-11 73.2 460 24.1
EL10Ac3g06467 Beta vulgaris HOM05D000592 ORTHO05D001485 7.7e-11 72.8 403 24.1
Peaxi162Scf00245g01313 Petunia axillaris HOM05D000592 ORTHO05D001485 1.0e-10 72.4 441 21.8
Sed0027882 Sechium edule HOM05D000592 ORTHO05D001485 1.0e-10 72.4 449 22.7
PGSC0003DMG400028772 Solanum tuberosum HOM05D000592 ORTHO05D001485 1.0e-10 72.4 419 24.6
arahy.Tifrunner.gnm1.ann1.E13XA1 Arachis hypogaea HOM05D000592 ORTHO05D001485 1.3e-10 72.0 428 22.7
BraA01t03373Z Brassica rapa HOM05D000592 ORTHO05D001485 1.3e-10 72.0 434 22.8
VMungo1383G0169 Vigna mungo HOM05D000592 ORTHO05D001485 1.7e-10 71.6 449 22.3
Lj5g0004600 Lotus japonicus HOM05D000592 ORTHO05D001485 2.2e-10 71.2 442 21.0
Potri.008G156200 Populus trichocarpa HOM05D000592 ORTHO05D001485 2.2e-10 71.2 459 24.0
arahy.Tifrunner.gnm1.ann1.C4CAJP Arachis hypogaea HOM05D000592 ORTHO05D001485 3.8e-10 70.5 447 22.4
CiPaw.07G088500 Carya illinoinensis HOM05D000592 ORTHO05D001485 3.8e-10 70.5 431 23.9
CANSAT78G1002 Cannabis sativa HOM05D000592 ORTHO05D001485 5.0e-10 70.1 378 22.8
VMungo1215G1460 Vigna mungo HOM05D000592 ORTHO05D001485 6.5e-10 69.7 440 22.0
Atru.chr4.2386 Acer truncatum HOM05D000592 ORTHO05D001485 1.1e-09 68.9 457 25.8
arahy.Tifrunner.gnm1.ann1.M530PZ Arachis hypogaea HOM05D000592 ORTHO05D001485 1.1e-09 68.9 428 22.9
Phvul.007G060600 Phaseolus vulgaris HOM05D000592 ORTHO05D001485 1.4e-09 68.6 451 21.7
PSO675G3983 Papaver somniferum HOM05D000592 ORTHO05D001485 1.9e-09 68.2 461 22.3
ClCG05G004940 Citrullus lanatus HOM05D000592 ORTHO05D001485 2.5e-09 67.8 330 25.2
Phvul.001G154100 Phaseolus vulgaris HOM05D000592 ORTHO05D001485 2.5e-09 67.8 446 22.2
Sed0008526 Sechium edule HOM05D000592 ORTHO05D001485 3.2e-09 67.4 451 22.2
Gohir.A09G218100 Gossypium hirsutum HOM05D000592 ORTHO05D001485 4.2e-09 67.0 449 22.9
arahy.Tifrunner.gnm1.ann1.C1DBA7 Arachis hypogaea HOM05D000592 ORTHO05D001485 5.5e-09 66.6 446 20.6
A01p32430 Brassica napus HOM05D000592 ORTHO05D001485 5.5e-09 66.6 434 21.9
DCAR_024179 Daucus carota HOM05D000592 ORTHO05D001485 5.5e-09 66.6 450 23.6
CSS0016542 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D001485 7.2e-09 66.2 403 21.6
Manes.03G174800 Manihot esculenta HOM05D000592 ORTHO05D001485 7.2e-09 66.2 448 22.3
Aa31LG8G9280 Aethionema arabicum HOM05D000592 ORTHO05D001485 9.4e-09 65.9 445 22.2
Ca_10861_v3 Cicer arietinum L. HOM05D000592 ORTHO05D001485 9.4e-09 65.9 436 21.8
Sc19g0004010 Simmondsia chinensis HOM05D000592 ORTHO05D001485 9.4e-09 65.9 187 28.3
CAN.G1402.9 Capsicum annuum HOM05D000592 ORTHO05D001485 1.2e-08 65.5 196 25.5
Os10g0422000 Oryza sativa ssp. japonica HOM05D000592 ORTHO05D001485 1.2e-08 65.5 295 25.8
Phvul.002G043800 Phaseolus vulgaris HOM05D000592 ORTHO05D001485 1.2e-08 65.5 442 21.3
AT3G22790 Arabidopsis thaliana HOM05D000592 ORTHO05D001485 1.6e-08 65.1 392 23.0
arahy.Tifrunner.gnm1.ann1.ZRQ19F Arachis hypogaea HOM05D000592 ORTHO05D001485 1.6e-08 65.1 447 22.1
Gohir.D09G220660 Gossypium hirsutum HOM05D000592 ORTHO05D001485 1.6e-08 65.1 448 22.1
TPR.G26084 Trifolium pratense HOM05D000592 ORTHO05D001485 1.6e-08 65.1 313 24.9
MELO3C006509.2 Cucumis melo HOM05D000592 ORTHO05D001485 2.1e-08 64.7 460 23.3
Duzib212G0402 Durio zibethinus HOM05D000592 ORTHO05D001485 2.1e-08 64.7 463 22.7
Gorai.006G241600 Gossypium raimondii HOM05D000592 ORTHO05D001485 2.1e-08 64.7 448 22.1
Hund02847 Selenicereus undatus HOM05D000592 ORTHO05D001485 2.1e-08 64.7 414 23.2
CSS0031408 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D001485 2.7e-08 64.3 403 21.3
Lsat_1_v5_gn_5_185981 Lactuca sativa HOM05D000592 ORTHO05D001485 2.7e-08 64.3 293 24.9
Lalb_Chr21g0304761 Lupinus albus HOM05D000592 ORTHO05D001485 2.7e-08 64.3 446 21.7
Zm00001eb222900 Zea mays HOM05D000592 ORTHO05D001485 2.7e-08 64.3 404 24.3
Thecc.01G273300 Theobroma cacao HOM05D000592 ORTHO05D001485 3.6e-08 63.9 303 25.4
MSTRG.24729 Avicennia marina HOM05D000592 ORTHO05D001485 4.6e-08 63.5 441 21.8
CsaV3_3G013000 Cucumis sativus L. HOM05D000592 ORTHO05D001485 4.6e-08 63.5 457 23.2
Medtr1g103160 Medicago truncatula HOM05D000592 ORTHO05D001485 4.6e-08 63.5 310 24.5
Thhalv10019883m.g Eutrema salsugineum HOM05D000592 ORTHO05D001485 6.1e-08 63.2 432 21.8
ATR0665G025 Amborella trichopoda HOM05D000592 ORTHO05D001485 7.9e-08 62.8 460 23.0
Medtr1g071540 Medicago truncatula HOM05D000592 ORTHO05D001485 7.9e-08 62.8 439 21.2
RcHm_v2.0_Chr6g0290321 Rosa chinensis HOM05D000592 ORTHO05D001485 7.9e-08 62.8 342 25.1
arahy.Tifrunner.gnm1.ann1.AFV0LT Arachis hypogaea HOM05D000592 ORTHO05D001485 1.4e-07 62.0 442 21.3
MSTRG.9961 Avicennia marina HOM05D000592 ORTHO05D001485 1.4e-07 62.0 456 23.0
Sp7g12890 Schrenkiella parvula HOM05D000592 ORTHO05D001485 1.4e-07 62.0 447 21.3
AL3G37110 Arabidopsis lyrata HOM05D000592 ORTHO05D001485 2.3e-07 61.2 435 21.1
HanXRQChr09g0247271 Helianthus annuus HOM05D000592 ORTHO05D001485 2.3e-07 61.2 418 21.1
Medtr7g095410 Medicago truncatula HOM05D000592 ORTHO05D001485 2.3e-07 61.2 175 25.1
Carub.0007s2738 Capsella rubella HOM05D000592 ORTHO05D001485 3.0e-07 60.8 287 23.3
Cc02_g30990 Coffea canephora HOM05D000592 ORTHO05D001485 3.0e-07 60.8 441 21.8
PSO732G0432 Papaver somniferum HOM05D000592 ORTHO05D001485 3.9e-07 60.5 497 21.3
CARHR221290 Cardamine hirsuta HOM05D000592 ORTHO05D001485 5.1e-07 60.1 282 22.3
Psat4g209880 Pisum sativum HOM05D000592 ORTHO05D001485 5.1e-07 60.1 435 21.6
Actinidia21137 Actinidia chinensis HOM05D000592 ORTHO05D001485 6.7e-07 59.7 194 27.3
Carub.0003s2291 Capsella rubella HOM05D000592 ORTHO05D001485 6.7e-07 59.7 389 22.1
THA.LOC104808571 Tarenaya hassleriana HOM05D000592 ORTHO05D001485 6.7e-07 59.7 357 23.8
CSS0004148 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D001485 8.8e-07 59.3 186 26.9
LjContig00408g0023554 Lotus japonicus HOM05D000592 ORTHO05D001485 8.8e-07 59.3 437 22.2
GSVIVG01001195001 Vitis vinifera HOM05D000592 ORTHO05D001485 8.8e-07 59.3 419 24.6
MSTRG.21869 Avicennia marina HOM05D000592 ORTHO05D001485 1.5e-06 58.5 455 21.1
PGSC0003DMG400019351 Solanum tuberosum HOM05D000592 ORTHO05D001485 1.5e-06 58.5 444 21.8
GSVIVG01018023001 Vitis vinifera HOM05D000592 ORTHO05D001485 1.5e-06 58.5 197 24.9
AUR62034737 Chenopodium quinoa HOM05D000592 ORTHO05D001485 2.0e-06 58.2 351 22.8
Medtr5g006520 Medicago truncatula HOM05D000592 ORTHO05D001485 2.0e-06 58.2 433 22.4
Ca_24407_v3 Cicer arietinum L. HOM05D000592 ORTHO05D001485 2.5e-06 57.8 424 22.2
Aqoxy2G03441 Aquilegia oxysepala HOM05D000592 ORTHO05D001485 3.3e-06 57.4 316 22.5
MELO3C015797.2 Cucumis melo HOM05D000592 ORTHO05D001485 3.3e-06 57.4 420 22.1
Duzib138G1205 Durio zibethinus HOM05D000592 ORTHO05D001485 3.3e-06 57.4 307 25.7
AT4G14760 Arabidopsis thaliana HOM05D000592 ORTHO05D001485 5.7e-06 56.6 244 23.0
Glyma.03G156600 Glycine max HOM05D000592 ORTHO05D001485 5.7e-06 56.6 171 26.9
Dinv44563 Davidia involucrata HOM05D000592 ORTHO05D001485 7.4e-06 56.2 141 29.1
Glyma.20G149200 Glycine max HOM05D000592 ORTHO05D001485 7.4e-06 56.2 466 21.2
Lj5g0015567 Lotus japonicus HOM05D000592 ORTHO05D001485 7.4e-06 56.2 425 21.4
HPP92_026611 Vanilla planifolia HOM05D000592 ORTHO05D001485 7.4e-06 56.2 341 24.6
Lalb_Chr02g0142601 Lupinus albus HOM05D000592 ORTHO05D001485 9.7e-06 55.8 431 20.9
SGA_v2.0_scaffold191G40457 Striga asiatica HOM05D000592 ORTHO05D001485 9.7e-06 55.8 443 21.9


User provided reference genes

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