Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.2e-304 1049.3 650 100.0
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 4.5e-190 668.7 679 65.2
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.5e-180 637.1 674 64.1
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.5e-180 636.3 676 69.5
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 6.2e-179 631.7 673 67.6
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 3.1e-178 629.4 653 66.6
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 3.1e-178 629.4 690 66.4
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 6.8e-178 628.2 666 63.8
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 2.6e-177 626.3 666 63.5
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.3e-176 624.0 656 68.4
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.7e-176 622.5 691 65.4
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 3.7e-176 622.5 681 65.8
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 4.1e-175 619.0 677 63.8
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.6e-174 617.1 689 60.8
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.1e-174 616.7 679 62.4
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 7.8e-174 614.8 691 66.6
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 1.3e-173 614.0 691 66.6
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 6.6e-173 611.7 671 66.6
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.5e-172 610.5 691 66.4
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 4.3e-172 609.0 672 61.5
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 4.3e-172 609.0 622 68.8
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 7.3e-172 608.2 679 66.1
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 9.5e-172 607.8 663 63.0
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 2.8e-171 606.3 662 66.6
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 1.8e-170 603.6 672 61.6
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 6.8e-170 601.7 671 65.6
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 8.9e-170 601.3 664 65.4
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 8.9e-170 601.3 659 66.8
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 1.5e-169 600.5 651 67.4
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 2.0e-169 600.1 648 63.1
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 5.8e-169 598.6 673 62.7
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 6.4e-168 595.1 665 65.1
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 1.4e-167 594.0 705 63.8
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 1.4e-167 594.0 654 63.3
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.4e-167 594.0 671 64.5
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 2.4e-167 593.2 668 61.4
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 3.2e-167 592.8 671 63.9
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 4.1e-167 592.4 670 61.3
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 7.1e-167 591.7 656 63.3
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 9.2e-167 591.3 648 61.7
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.2e-166 590.9 655 63.8
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.2e-166 590.9 659 61.6
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.2e-166 590.9 659 61.6
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.2e-166 590.9 669 64.4
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 2.1e-166 590.1 645 61.9
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 2.1e-166 590.1 645 61.9
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 2.1e-166 590.1 645 61.9
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 2.1e-166 590.1 673 61.1
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 3.5e-166 589.3 677 60.4
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 3.5e-166 589.3 704 54.8
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 7.8e-166 588.2 682 63.6
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 1.0e-165 587.8 675 60.9
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 1.0e-165 587.8 674 63.1
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.3e-165 587.4 672 59.8
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.3e-165 587.4 665 63.8
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 3.9e-165 585.9 665 64.1
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 2.5e-164 583.2 639 66.0
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.3e-164 582.8 650 61.5
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 4.3e-164 582.4 664 59.9
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 7.3e-164 581.6 660 66.1
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 4.7e-163 578.9 669 62.0
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.4e-162 577.4 661 60.5
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 3.1e-162 576.2 681 63.0
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 5.2e-162 575.5 656 60.8
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 6.8e-162 575.1 670 59.7
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 8.9e-162 574.7 681 60.9
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 2.0e-161 573.5 661 59.6
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 7.6e-161 571.6 650 60.3
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 9.9e-161 571.2 686 59.3
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.3e-160 570.9 668 64.1
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 2.9e-160 569.7 668 64.1
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.4e-159 567.4 670 63.0
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 1.9e-159 567.0 679 62.9
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 2.4e-159 566.6 650 60.0
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 7.1e-159 565.1 673 60.5
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.2e-158 564.3 665 59.1
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.6e-158 563.9 674 63.4
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 2.1e-158 563.5 675 63.6
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.1e-158 563.5 652 60.1
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 3.5e-158 562.8 684 62.1
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.0e-157 561.2 667 58.9
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.3e-157 560.8 681 60.2
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.7e-157 560.5 667 58.6
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 1.7e-157 560.5 673 62.1
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.9e-157 559.3 665 58.5
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.5e-156 557.4 676 61.4
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.9e-156 557.0 667 60.4
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 1.9e-156 557.0 666 59.9
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 3.3e-156 556.2 676 59.0
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 3.3e-156 556.2 559 66.2
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 4.3e-156 555.8 656 58.2
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 4.3e-156 555.8 676 63.0
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 3.6e-155 552.7 666 60.2
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 3.6e-155 552.7 678 62.1
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 1.1e-154 551.2 666 60.1
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 1.4e-154 550.8 684 57.7
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 3.1e-154 549.7 560 59.8
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 9.0e-154 548.1 712 57.9
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 2.0e-153 547.0 557 65.7
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.1e-150 537.0 657 56.3
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 1.7e-149 533.9 677 62.0
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 3.0e-149 533.1 671 54.1
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.0e-149 533.1 650 58.3
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 2.5e-148 530.0 678 61.4
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 9.6e-148 528.1 599 66.8
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.6e-147 527.3 703 57.5
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.1e-147 526.9 651 58.8
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.4e-146 524.2 617 53.5
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 2.2e-144 516.9 608 60.9
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.5e-137 494.2 585 62.9
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 3.3e-132 476.5 512 70.7
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 6.9e-130 468.8 689 52.4
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 1.3e-125 454.5 534 63.3
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 4.5e-121 439.5 677 57.3
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 3.6e-118 429.9 623 48.0
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.9e-117 426.4 677 49.8
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 5.7e-116 422.5 228 96.5
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 5.5e-111 406.0 734 52.6
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.8e-109 401.0 505 65.3
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.8e-109 401.0 623 51.0
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 3.3e-108 396.7 525 59.8
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.6e-105 387.1 532 57.7
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.8e-98 364.4 519 55.3
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 4.1e-98 363.2 295 64.7
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 3.2e-95 353.6 531 49.0
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 3.7e-91 340.1 313 60.1
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 6.8e-85 319.3 484 56.0
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 4.9e-83 313.2 476 59.5
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 8.3e-83 312.4 298 57.4
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.8e-82 311.2 211 73.5
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.6e-78 298.1 239 64.0
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 2.8e-78 297.4 461 42.1
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.0e-76 291.2 208 79.8
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.8e-69 268.1 301 75.4
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 3.0e-64 250.8 219 62.1
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 2.0e-60 238.0 286 49.0
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 3.7e-51 207.2 139 72.7
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 3.2e-50 204.1 290 45.2
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 4.1e-50 203.8 211 51.2
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 9.2e-50 202.6 297 43.4
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 8.6e-48 196.1 328 58.2
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 1.8e-45 188.3 224 61.2
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 1.4e-42 178.7 294 40.5
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 4.2e-42 177.2 111 78.4
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 6.6e-40 169.9 111 75.7
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.2e-34 151.0 118 66.1
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.1e-29 136.0 123 52.0
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 1.2e-28 132.5 167 44.9
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.2e-25 122.5 181 42.5
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-25 121.3 326 51.8
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 6.0e-25 120.2 61 90.2
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.1e-22 111.7 101 58.4
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.1e-21 109.4 92 58.7
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.8e-21 108.6 89 58.4
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.2e-20 105.9 92 58.7
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 2.2e-19 101.7 395 37.0
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 5.5e-18 97.1 69 66.7
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 5.7e-15 87.0 67 59.7
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 1.3e-14 85.9 150 36.0
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 2.8e-14 84.7 186 34.9
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 3.7e-14 84.3 68 57.4
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 2.0e-12 78.6 64 56.2
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 2.6e-12 78.2 63 57.1
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 2.2e-11 75.1 203 27.6
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.2e-10 70.9 62 54.8
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 4.2e-10 70.9 167 34.7
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 5.5e-10 70.5 552 26.8
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 1.9e-07 62.0 44 61.4
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 4.3e-07 60.8 120 35.0
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 5.7e-07 60.5 52 51.9
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 9.7e-07 59.7 99 40.4
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 1.6e-06 58.9 73 45.2
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 2.8e-06 58.2 49 51.0
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 8.2e-06 56.6 79 41.8
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 8.2e-06 56.6 35 62.9


User provided reference genes

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