Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 0.0e+00 1239.6 639 100.0
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 7.4e-185 651.4 557 63.4
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 5.9e-182 641.7 562 63.9
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.0e-181 641.0 571 61.6
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 1.9e-180 636.7 561 61.3
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 4.2e-180 635.6 572 61.7
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-179 634.0 570 61.6
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 2.1e-179 633.3 548 64.6
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 2.1e-179 633.3 570 61.8
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 4.6e-179 632.1 562 60.5
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 1.8e-178 630.2 561 62.0
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 2.3e-178 629.8 570 61.9
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 3.9e-178 629.0 558 61.5
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 1.9e-177 626.7 572 61.9
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 1.6e-176 623.6 540 63.1
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 4.8e-176 622.1 564 62.1
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 1.1e-175 620.9 573 60.2
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 1.1e-175 620.9 559 60.6
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 3.1e-175 619.4 566 62.2
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 2.6e-174 616.3 548 60.9
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 7.7e-174 614.8 571 60.4
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 7.7e-174 614.8 568 60.6
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 1.0e-173 614.4 569 59.9
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 1.3e-173 614.0 572 61.5
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 1.7e-173 613.6 552 59.8
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 5.0e-173 612.1 571 61.6
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 6.5e-173 611.7 560 61.2
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 8.5e-173 611.3 566 62.0
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 1.1e-172 610.9 549 60.3
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 1.1e-172 610.9 564 61.7
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 1.9e-172 610.1 599 59.4
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 5.5e-172 608.6 567 62.3
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.7e-171 606.3 574 61.8
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 6.1e-171 605.1 553 62.7
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.0e-170 604.4 558 59.5
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 2.3e-170 603.2 559 60.8
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 3.0e-170 602.8 562 59.3
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 3.9e-170 602.4 569 61.3
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 5.1e-170 602.1 629 53.9
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 6.7e-170 601.7 571 61.8
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 6.7e-170 601.7 571 61.8
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 1.1e-169 600.9 572 59.1
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 1.5e-169 600.5 565 61.2
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 1.5e-169 600.5 562 60.7
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 1.5e-169 600.5 533 61.7
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 2.0e-169 600.1 547 62.2
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 2.6e-169 599.7 572 58.7
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 4.4e-169 599.0 564 60.6
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 9.7e-169 597.8 559 60.5
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 9.7e-169 597.8 564 60.8
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 9.7e-169 597.8 606 58.1
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 2.2e-168 596.7 564 59.0
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 2.2e-168 596.7 540 62.8
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 2.8e-168 596.3 565 59.8
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 3.7e-168 595.9 571 58.5
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 4.8e-168 595.5 564 58.9
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 6.3e-168 595.1 557 61.4
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 6.3e-168 595.1 571 60.9
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 8.2e-168 594.7 566 58.3
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 1.1e-167 594.3 540 62.6
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 9.1e-167 591.3 578 60.7
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 1.2e-166 590.9 558 61.1
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 1.2e-166 590.9 579 59.9
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 1.5e-166 590.5 549 61.7
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 2.6e-166 589.7 576 60.1
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 4.5e-166 589.0 564 58.3
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 4.5e-166 589.0 590 55.9
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 1.0e-165 587.8 598 58.7
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 1.3e-165 587.4 535 62.6
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 2.2e-165 586.6 590 55.4
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.8e-165 585.9 557 61.2
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 6.5e-165 585.1 589 56.9
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 6.5e-165 585.1 588 57.1
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 1.1e-164 584.3 496 65.3
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 2.5e-164 583.2 589 57.4
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 2.5e-164 583.2 586 57.0
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 2.5e-164 583.2 568 58.8
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 7.2e-164 581.6 578 60.2
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 1.6e-163 580.5 586 56.8
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 2.7e-163 579.7 589 56.7
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 3.6e-163 579.3 588 56.5
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 3.6e-163 579.3 587 57.1
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 8.8e-162 574.7 564 59.6
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 1.1e-161 574.3 531 60.3
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 3.3e-161 572.8 571 59.2
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 3.3e-161 572.8 569 59.2
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 1.0e-157 561.2 570 57.7
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 4.7e-155 552.4 564 58.2
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 7.5e-153 545.0 571 56.0
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 9.7e-153 544.7 605 53.4
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 2.2e-149 533.5 573 55.5
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 2.9e-149 533.1 324 79.3
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 4.0e-146 522.7 585 54.2
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 8.8e-146 521.5 553 55.3
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 1.1e-143 514.6 559 54.7
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 6.3e-136 488.8 598 51.3
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 9.2e-119 431.8 341 64.5
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 6.0e-118 429.1 586 45.6
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 4.3e-116 422.9 427 55.7
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 3.3e-108 396.7 416 56.2
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 8.1e-99 365.5 301 62.1
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 8.4e-96 355.5 221 78.3
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.0e-94 349.4 379 54.9
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.1e-90 337.0 385 52.2
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 3.7e-83 313.5 263 58.9
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 8.1e-83 312.4 374 50.3
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 2.1e-75 287.7 355 48.5
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.2e-73 282.0 185 80.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 2.9e-72 277.3 184 77.2
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.8e-66 258.1 415 42.9
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.8e-61 239.2 148 75.7
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 3.3e-60 237.3 366 39.3
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 4.1e-58 230.3 365 38.6
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 5.3e-58 229.9 295 48.5
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.2e-54 218.8 127 85.0
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.2e-54 218.8 127 85.0
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 4.7e-54 216.9 127 84.3
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.5e-52 211.8 372 39.8
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 3.7e-51 207.2 369 38.8
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 1.1e-50 205.7 369 39.0
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.1e-50 205.7 126 81.7
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 2.4e-50 204.5 127 81.1
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 2.4e-50 204.5 338 40.5
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 2.1e-38 164.9 275 43.6
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 3.0e-37 161.0 97 80.4
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 1.7e-32 145.2 82 86.6
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.7e-30 137.9 85 82.4
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 9.8e-28 129.4 231 40.3
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 1.2e-17 95.9 174 40.8
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 5.6e-15 87.0 199 37.2
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 1.1e-07 62.8 95 47.4
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 2.5e-07 61.6 105 41.9


User provided reference genes

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