Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010770 Vanilla planifolia HOM05D003039 ORTHO05D008410 3.3e-77 292.0 188 100.0
MBI14_g08138_MAGBIO Magnolia biondii HOM05D003039 ORTHO05D008410 2.7e-26 122.9 181 35.4
Eucgr.D00236 Eucalyptus grandis HOM05D003039 ORTHO05D008410 3.5e-26 122.5 181 33.1
Os06g0694600 Oryza sativa ssp. japonica HOM05D003039 ORTHO05D008410 7.8e-26 121.3 171 40.4
PGR083G2073 Punica granatum HOM05D003039 ORTHO05D008410 2.4e-22 109.8 108 45.4
TAR633G1464 Trochodendron aralioides HOM05D003039 ORTHO05D008410 1.5e-21 107.1 181 33.7
CsaV3_5G005760 Cucumis sativus L. HOM05D003039 ORTHO05D008410 4.4e-21 105.5 181 31.5
Lj1P893G46 Lonicera japonica HOM05D003039 ORTHO05D008410 1.1e-19 100.9 181 30.9
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 2.4e-19 99.8 107 44.9
CDE07G0739 Ceratophyllum demersum HOM05D003039 ORTHO05D008410 3.2e-19 99.4 179 44.7
BcaC07g40632 Brassica carinata HOM05D003039 ORTHO05D008410 9.3e-19 97.8 184 31.5
C08p36220 Brassica napus HOM05D003039 ORTHO05D008410 9.3e-19 97.8 184 31.5
BolC8t51204H Brassica oleracea HOM05D003039 ORTHO05D008410 1.2e-18 97.4 184 31.5
MELO3C005377.2 Cucumis melo HOM05D003039 ORTHO05D008410 1.6e-18 97.1 181 30.4
Hma1.2p1_0178F.1_g078560 Hydrangea macrophylla HOM05D003039 ORTHO05D008410 1.0e-17 94.4 184 29.3
AT3G61360 Arabidopsis thaliana HOM05D003039 ORTHO05D008410 5.3e-14 82.0 107 38.3
TAR633G0505 Trochodendron aralioides HOM05D003039 ORTHO05D008410 6.9e-14 81.6 151 31.1
Zm00001eb226310 Zea mays HOM05D003039 ORTHO05D008410 9.0e-14 81.3 176 31.2
BraA09t40767Z Brassica rapa HOM05D003039 ORTHO05D008410 4.5e-13 79.0 184 27.7
CARHR171700 Cardamine hirsuta HOM05D003039 ORTHO05D008410 6.4e-12 75.1 179 27.9
Duzib235G1487 Durio zibethinus HOM05D003039 ORTHO05D008410 7.1e-11 71.6 182 24.7
AL1G53570 Arabidopsis lyrata HOM05D003039 ORTHO05D017397 4.6e-10 68.9 74 45.9
SGA_v2.0_scaffold48G17965 Striga asiatica HOM05D003039 ORTHO05D008410 4.6e-10 68.9 182 35.2
Dinv06600 Davidia involucrata HOM05D003039 ORTHO05D008410 1.8e-09 67.0 124 61.3
Ciclev10019823m.g Citrus clementina HOM05D003039 ORTHO05D008410 5.1e-09 65.5 112 33.9
Gorai.013G134200 Gossypium raimondii HOM05D003039 ORTHO05D008410 5.1e-09 65.5 184 23.4
Carub.0005s2803 Capsella rubella HOM05D003039 ORTHO05D008410 8.7e-09 64.7 179 26.3
AUR62020631 Chenopodium quinoa HOM05D000182 ORTHO05D000112 1.1e-08 64.3 82 37.8
RcHm_v2.0_Chr1g0329261 Rosa chinensis HOM05D003039 ORTHO05D008410 1.1e-08 64.3 182 27.5
Prupe.2G028200 Prunus persica HOM05D003039 ORTHO05D008410 2.5e-08 63.2 112 30.4
CSS0038737 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 5.6e-08 62.0 107 33.6
Manes.03G196200 Manihot esculenta HOM05D003039 ORTHO05D008410 5.6e-08 62.0 119 50.4
CSS0042843 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 7.4e-08 61.6 181 26.0
Gohir.D13G119800 Gossypium hirsutum HOM05D003039 ORTHO05D008410 7.4e-08 61.6 184 22.8
Nn2g12485 Nelumbo nucifera HOM05D003039 ORTHO05D008410 7.4e-08 61.6 118 31.4
Gohir.A13G116700 Gossypium hirsutum HOM05D003039 ORTHO05D008410 9.6e-08 61.2 182 23.1
A09p53410 Brassica napus HOM05D003039 ORTHO05D008410 1.3e-07 60.8 141 27.0
Potri.001G130400 Populus trichocarpa HOM05D003039 ORTHO05D008410 1.3e-07 60.8 115 30.4
COL.COLO4_07473 Corchorus olitorius HOM05D003039 ORTHO05D008410 3.7e-07 59.3 117 27.4
Aa31LG9G15670 Aethionema arabicum HOM05D003039 ORTHO05D008410 4.8e-07 58.9 124 29.0
MD03G1030500 Malus domestica HOM05D003039 ORTHO05D008410 4.8e-07 58.9 109 30.3
Sabra01G0100800 Salix brachista HOM05D003039 ORTHO05D008410 4.8e-07 58.9 115 28.7
THA.LOC104812722 Tarenaya hassleriana HOM05D003039 ORTHO05D008410 4.8e-07 58.9 122 47.5
Rhsim05G0067200 Rhododendron simsii HOM05D003039 ORTHO05D008410 1.4e-06 57.4 67 40.3
Rhsim02G0205300 Rhododendron simsii HOM05D003039 ORTHO05D008410 1.8e-06 57.0 111 31.5
CSS0033752 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 2.4e-06 56.6 181 25.4
VMungo0016G0002 Vigna mungo HOM05D003039 ORTHO05D008410 2.4e-06 56.6 110 30.0
CSS0020082 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 4.0e-06 55.8 111 34.2
Glyma.19G010600 Glycine max HOM05D003039 ORTHO05D008410 4.0e-06 55.8 112 29.5
Thecc.06G053600 Theobroma cacao HOM05D003039 ORTHO05D008410 4.0e-06 55.8 117 25.6
Lj1g0018465 Lotus japonicus HOM05D003039 ORTHO05D008410 5.3e-06 55.5 109 31.2
Atru.chr4.952 Acer truncatum HOM05D003039 ORTHO05D008410 6.9e-06 55.1 112 28.6


User provided reference genes

Program Settings